Wall clock time and date at job start Tue Mar 31 2020 20:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46834 * 2 1 4 4 C 1.50697 * 109.47543 * 239.99288 * 2 1 3 5 5 H 1.08003 * 120.00026 * 240.00324 * 4 2 1 6 6 C 1.37880 * 119.99906 * 59.99815 * 4 2 1 7 7 N 1.31513 * 119.99899 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99880 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.46957 * 269.99812 * 8 6 4 10 10 H 1.48504 * 109.47126 * 29.99872 * 8 6 4 11 11 H 1.48504 * 109.46963 * 149.99690 * 8 6 4 12 12 N 1.46505 * 109.46819 * 119.98998 * 2 1 3 13 13 S 1.65598 * 120.00111 * 265.00168 * 12 2 1 14 14 O 1.42104 * 106.40125 * 178.54193 * 13 12 2 15 15 O 1.42098 * 106.40447 * 311.46026 * 13 12 2 16 16 C 1.76199 * 107.21640 * 65.00347 * 13 12 2 17 17 C 1.38360 * 119.93383 * 269.72264 * 16 13 12 18 18 C 1.38319 * 120.27394 * 179.72578 * 17 16 13 19 19 C 1.38000 * 120.13775 * 0.54850 * 18 17 16 20 20 C 1.39464 * 119.85882 * 359.73284 * 19 18 17 21 21 C 1.48024 * 120.13279 * 180.02562 * 20 19 18 22 22 N 1.31626 * 126.47674 * 158.46422 * 21 20 19 23 23 N 1.28414 * 110.49489 * 179.87464 * 22 21 20 24 24 N 1.28899 * 110.39506 * 0.40258 * 23 22 21 25 25 N 1.35599 * 126.47481 * 338.77683 * 21 20 19 26 26 C 1.46505 * 127.40061 * 359.94451 * 25 21 20 27 27 C 1.37962 * 119.93235 * 90.00135 * 16 13 12 28 28 H 1.09004 * 109.47150 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47532 * 300.00278 * 1 2 3 30 30 H 1.08997 * 109.47074 * 60.00664 * 1 2 3 31 31 H 0.97000 * 119.99792 * 180.02562 * 7 6 4 32 32 H 0.97000 * 119.99849 * 85.00239 * 12 2 1 33 33 H 1.08006 * 119.85765 * 0.02562 * 17 16 13 34 34 H 1.08001 * 119.92700 * 180.25660 * 18 17 16 35 35 H 1.07991 * 120.06914 * 179.70302 * 19 18 17 36 36 H 1.09002 * 109.47081 * 83.63722 * 26 25 21 37 37 H 1.09000 * 109.47090 * 203.63517 * 26 25 21 38 38 H 1.08999 * 109.47038 * 323.63448 * 26 25 21 39 39 H 1.08003 * 120.06805 * 0.02562 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 2.1374 -0.8600 -3.5564 8 14 0.6259 1.2795 -2.6543 9 1 -0.8019 0.8741 -2.6995 10 1 0.8491 2.1771 -1.4925 11 1 0.9773 1.9949 -3.9073 12 7 2.0183 -0.6904 1.1964 13 16 2.4120 0.1775 2.5505 14 8 2.8122 -0.7693 3.5317 15 8 3.2435 1.2446 2.1156 16 6 0.9273 0.9151 3.1473 17 6 0.5553 2.1726 2.7061 18 6 -0.6117 2.7558 3.1656 19 6 -1.4068 2.0905 4.0765 20 6 -1.0342 0.8252 4.5294 21 6 -1.8828 0.1059 5.5060 22 7 -1.8978 -1.1923 5.7229 23 7 -2.7485 -1.4852 6.6392 24 7 -3.3366 -0.4196 7.0634 25 7 -2.7959 0.6592 6.3419 26 6 -3.1440 2.0768 6.4669 27 6 0.1409 0.2399 4.0579 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.9034 -0.5285 -4.4374 32 1 2.1109 -1.6560 1.1952 33 1 1.1764 2.6989 1.9963 34 1 -0.8988 3.7359 2.8144 35 1 -2.3152 2.5490 4.4381 36 1 -3.8766 2.3397 5.7039 37 1 -3.5660 2.2616 7.4548 38 1 -2.2483 2.6838 6.3351 39 1 0.4348 -0.7396 4.4053 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360285559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:24 Heat of formation + Delta-G solvation = 56.011564 kcal Electronic energy + Delta-G solvation = -26955.888729 eV Core-core repulsion = 23027.931793 eV Total energy + Delta-G solvation = -3927.956936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.16571 -40.45104 -38.40791 -37.44643 -36.97380 -36.45780 -34.33831 -34.23244 -32.53008 -31.56112 -30.92761 -29.31493 -27.12211 -25.31742 -24.85616 -23.82965 -22.90061 -22.59927 -20.63475 -19.50862 -19.04333 -18.14857 -17.96133 -17.86338 -17.49579 -17.24454 -16.75915 -16.55885 -16.00560 -15.30954 -15.01450 -14.93973 -14.93364 -14.73045 -14.43393 -14.25756 -13.96260 -13.85659 -13.69448 -13.57101 -13.24881 -13.18294 -12.98658 -12.89092 -12.71012 -12.47940 -12.14448 -12.11771 -12.04682 -11.79706 -11.55366 -11.44061 -11.25418 -10.83898 -10.57456 -10.24347 -10.03753 -8.27971 -6.35486 -0.81461 -0.64128 -0.28487 0.22545 0.75132 1.15191 1.35724 1.42635 1.52815 1.99852 2.33608 2.35564 2.57691 2.73391 3.05258 3.07349 3.33374 3.60692 3.74228 3.79354 3.92548 4.13906 4.20627 4.22276 4.28475 4.36376 4.41148 4.49860 4.58818 4.68266 4.68833 4.80903 4.84390 4.98897 5.02136 5.12622 5.24034 5.49733 5.53398 5.55938 6.21757 6.32447 6.70879 7.23843 7.29361 8.88396 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.003649 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.050303 B = 7670.916409 C = 8103.044568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.244 3.756 3 H 0.054 0.946 4 C -0.533 4.533 5 H 0.043 0.957 6 C 0.013 3.987 7 N -0.945 5.945 8 Si 0.940 3.060 9 H -0.258 1.258 10 H -0.228 1.228 11 H -0.299 1.299 12 N -1.096 6.096 13 S 2.698 3.302 14 O -0.989 6.989 15 O -0.983 6.983 16 C -0.674 4.674 17 C -0.006 4.006 18 C -0.118 4.118 19 C -0.028 4.028 20 C -0.069 4.069 21 C 0.291 3.709 22 N -0.356 5.356 23 N -0.067 5.067 24 N -0.093 5.093 25 N -0.361 5.361 26 C 0.057 3.943 27 C 0.024 3.976 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.268 0.732 32 H 0.419 0.581 33 H 0.154 0.846 34 H 0.190 0.810 35 H 0.184 0.816 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.725 15.443 18.276 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.137 3.863 3 H 0.071 0.929 4 C -0.572 4.572 5 H 0.061 0.939 6 C -0.185 4.185 7 N -0.584 5.584 8 Si 0.765 3.235 9 H -0.183 1.183 10 H -0.151 1.151 11 H -0.227 1.227 12 N -0.856 5.856 13 S 2.790 3.210 14 O -0.980 6.980 15 O -0.973 6.973 16 C -0.763 4.763 17 C -0.026 4.026 18 C -0.137 4.137 19 C -0.048 4.048 20 C -0.074 4.074 21 C 0.016 3.984 22 N -0.208 5.208 23 N -0.062 5.062 24 N -0.079 5.079 25 N -0.158 5.158 26 C -0.082 4.082 27 C 0.002 3.998 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.254 0.746 33 H 0.172 0.828 34 H 0.207 0.793 35 H 0.201 0.799 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.410 14.541 19.185 27.556 hybrid contribution -0.436 0.185 -0.899 1.017 sum -13.846 14.726 18.286 27.257 Atomic orbital electron populations 1.22610 0.97119 1.02516 1.00766 1.18812 0.91496 0.93178 0.82829 0.92881 1.21354 1.32005 1.13462 0.90372 0.93872 1.25866 0.97279 1.00309 0.95067 1.70035 1.47172 1.42449 0.98748 0.86002 0.79262 0.79829 0.78434 1.18347 1.15098 1.22700 1.55208 1.83871 1.19863 1.26678 1.01376 0.74495 0.73020 0.72127 1.93540 1.82035 1.62502 1.59875 1.93546 1.64802 1.57105 1.81853 1.30667 1.24122 1.08432 1.13122 1.21600 0.96097 0.90933 0.93926 1.21704 0.92884 1.02466 0.96609 1.22125 0.99604 0.90339 0.92720 1.17505 0.94615 0.96232 0.99052 1.23516 0.91894 0.89584 0.93405 1.74734 1.19066 1.12181 1.14863 1.77991 1.03275 1.19591 1.05314 1.82399 1.19320 0.89435 1.16712 1.51979 1.26703 1.11583 1.25530 1.23143 1.05737 0.70862 1.08414 1.20873 0.90634 0.98357 0.89959 0.92157 0.91211 0.93285 0.92320 0.74586 0.82823 0.79258 0.79939 0.85462 0.85777 0.85353 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.07 9.00 71.98 0.65 -5.42 16 2 C 0.24 10.15 2.49 44.24 0.11 10.26 16 3 H 0.05 2.19 6.56 -2.38 -0.02 2.17 16 4 C -0.53 -28.42 9.34 25.60 0.24 -28.19 16 5 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 6 C 0.01 0.72 5.45 84.66 0.46 1.19 16 7 N -0.94 -56.57 13.96 21.45 0.30 -56.27 16 8 Si 0.94 39.80 24.37 68.60 1.67 41.47 16 9 H -0.26 -10.13 6.87 99.48 0.68 -9.45 16 10 H -0.23 -8.28 6.53 99.48 0.65 -7.63 16 11 H -0.30 -12.94 7.11 99.48 0.71 -12.24 16 12 N -1.10 -40.50 5.46 -172.51 -0.94 -41.45 16 13 S 2.70 90.25 5.72 -56.49 -0.32 89.92 16 14 O -0.99 -36.72 17.27 -128.00 -2.21 -38.93 16 15 O -0.98 -37.56 16.60 -128.00 -2.13 -39.68 16 16 C -0.67 -16.92 5.05 22.23 0.11 -16.81 16 17 C -0.01 -0.11 8.60 22.32 0.19 0.09 16 18 C -0.12 -1.19 10.03 22.23 0.22 -0.97 16 19 C -0.03 -0.26 8.68 22.51 0.20 -0.06 16 20 C -0.07 -1.26 5.86 -20.08 -0.12 -1.38 16 21 C 0.29 6.22 7.75 136.80 1.06 7.28 16 22 N -0.36 -10.38 12.03 -51.65 -0.62 -11.00 16 23 N -0.07 -1.97 13.37 37.02 0.50 -1.47 16 24 N -0.09 -2.19 13.93 37.02 0.52 -1.67 16 25 N -0.36 -5.73 4.10 -361.31 -1.48 -7.21 16 26 C 0.06 0.10 9.73 127.77 1.24 1.35 16 27 C 0.02 0.57 9.18 22.51 0.21 0.77 16 28 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.07 1.92 6.18 -2.39 -0.01 1.91 16 30 H 0.05 1.76 3.27 -2.39 -0.01 1.76 16 31 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.42 14.94 8.83 -96.75 -0.85 14.08 16 33 H 0.15 2.87 7.60 -2.91 -0.02 2.85 16 34 H 0.19 0.30 8.06 -2.91 -0.02 0.27 16 35 H 0.18 -0.08 5.15 -2.91 -0.02 -0.09 16 36 H 0.13 -0.47 7.68 -2.39 -0.02 -0.49 16 37 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.13 -0.36 6.74 -2.39 -0.02 -0.37 16 39 H 0.14 3.75 7.56 -2.91 -0.02 3.73 16 Total: -1.00 -82.91 338.75 0.05 -82.86 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.20 Total: 15.33 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 4.57 Total: -31.89 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -1.73 Total: -119.07 kcal Atomic # 8 Polarization: -74.28 SS G_CDS: -4.34 Total: -78.62 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.67 Total: 41.47 kcal Atomic # 16 Polarization: 90.25 SS G_CDS: -0.32 Total: 89.92 kcal Total: -82.91 0.05 -82.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360285559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.869 kcal (2) G-P(sol) polarization free energy of solvation -82.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds