Wall clock time and date at job start Tue Mar 31 2020 19:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40092 * 125.97365 * 180.13104 * 4 3 2 6 6 C 1.34773 * 120.00080 * 0.31318 * 5 4 3 7 7 O 1.21595 * 120.00092 * 0.02562 * 6 5 4 8 8 C 1.47582 * 120.00095 * 179.97438 * 6 5 4 9 9 C 1.39736 * 120.07129 * 359.73247 * 8 6 5 10 10 C 1.37940 * 119.91755 * 179.76454 * 9 8 6 11 11 F 1.35103 * 119.95830 * 180.24910 * 10 9 8 12 12 C 1.39088 * 120.07484 * 0.48344 * 10 9 8 13 13 O 1.35826 * 119.91925 * 179.74556 * 12 10 9 14 14 C 1.39092 * 120.15823 * 359.76497 * 12 10 9 15 15 F 1.35103 * 119.96500 * 179.97438 * 14 12 10 16 16 C 1.37933 * 120.07162 * 0.02562 * 14 12 10 17 17 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46498 * 125.97410 * 359.96275 * 18 2 1 20 20 C 1.50702 * 109.47036 * 90.00121 * 19 18 2 21 21 H 1.08000 * 120.00135 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00214 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99653 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00146 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47144 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47003 * 120.00274 * 24 22 20 27 27 H 1.48499 * 109.47189 * 240.00201 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08005 * 126.06881 * 359.97438 * 3 2 1 32 32 H 0.97004 * 119.99910 * 180.31575 * 5 4 3 33 33 H 1.07995 * 120.04622 * 359.96971 * 9 8 6 34 34 H 0.96702 * 113.99547 * 270.01760 * 13 12 10 35 35 H 1.08008 * 120.03279 * 179.97438 * 16 14 12 36 36 H 1.08993 * 109.47060 * 209.99617 * 19 18 2 37 37 H 1.08996 * 109.47079 * 330.00441 * 19 18 2 38 38 H 0.96998 * 120.00028 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7730 1.4744 0.0073 6 6 4.6363 2.8152 0.0141 7 8 3.5270 3.3132 0.0175 8 6 5.8329 3.6790 0.0186 9 6 7.1084 3.1083 0.0215 10 6 8.2247 3.9187 0.0208 11 9 9.4583 3.3678 0.0184 12 6 8.0816 5.3022 0.0274 13 8 9.1830 6.0971 0.0319 14 6 6.8135 5.8736 0.0298 15 9 6.6791 7.2179 0.0367 16 6 5.6930 5.0692 0.0261 17 7 3.6337 -0.6578 -0.0035 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0127 20 6 1.6943 -2.9553 -1.4359 21 1 1.9099 -2.2834 -2.2535 22 6 1.2767 -4.2437 -1.6941 23 7 1.0137 -5.0617 -0.6985 24 14 1.0845 -4.8273 -3.4582 25 1 1.4395 -3.7236 -4.3862 26 1 1.9839 -5.9845 -3.6974 27 1 -0.3232 -5.2375 -3.6933 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1211 -0.0004 32 1 5.6580 1.0772 0.0049 33 1 7.2202 2.0342 0.0209 34 1 9.5015 6.3228 0.9166 35 1 4.7086 5.5136 0.0284 36 1 2.5848 -3.1072 0.4975 37 1 0.8915 -2.5584 0.5012 38 1 0.7196 -5.9679 -0.8801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436965475.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:53 Heat of formation + Delta-G solvation = -56.468730 kcal Electronic energy + Delta-G solvation = -27437.034937 eV Core-core repulsion = 22918.067352 eV Total energy + Delta-G solvation = -4518.967585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.51579 -49.48176 -41.05884 -40.19988 -39.11043 -37.19124 -35.13886 -33.48876 -31.76757 -31.09662 -30.94504 -30.34342 -26.83552 -26.44168 -24.89777 -23.66174 -22.99326 -21.68975 -20.04669 -19.80991 -19.33777 -18.24152 -18.02405 -16.98292 -16.76845 -16.64855 -16.49113 -15.94003 -15.81129 -15.68197 -15.39010 -15.31974 -14.99076 -14.56779 -14.31225 -14.09081 -13.76522 -13.25891 -13.04320 -12.86942 -12.53642 -12.46869 -12.38802 -12.12442 -11.76055 -11.48264 -11.39725 -11.14439 -10.90463 -10.54959 -10.32254 -10.17001 -9.81989 -9.60375 -9.45338 -9.41172 -8.69406 -8.05592 -7.57790 -6.30441 -4.38251 -0.14721 0.31422 1.99982 2.44662 2.65594 2.96472 3.01396 3.17396 3.25664 3.31254 3.48346 3.64488 3.65607 3.69932 4.09586 4.17702 4.27526 4.36275 4.81913 5.02324 5.03530 5.07791 5.24513 5.36508 5.45115 5.60836 5.84039 5.91672 6.03896 6.10116 6.39009 6.41094 6.60216 6.82627 6.85800 6.98658 7.27144 7.47421 7.62292 7.83052 7.94433 7.97388 8.53288 8.69521 9.28589 10.76968 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.002261 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.870331 B =12378.395125 C =13173.714277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.094 3.906 3 C -0.288 4.288 4 C 0.259 3.741 5 N -0.620 5.620 6 C 0.566 3.434 7 O -0.501 6.501 8 C -0.074 4.074 9 C -0.117 4.117 10 C 0.103 3.897 11 F -0.118 7.118 12 C 0.063 3.937 13 O -0.474 6.474 14 C 0.101 3.899 15 F -0.118 7.118 16 C -0.088 4.088 17 N -0.316 5.316 18 N -0.314 5.314 19 C 0.257 3.743 20 C -0.537 4.537 21 H 0.065 0.935 22 C 0.066 3.934 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.411 0.589 33 H 0.155 0.845 34 H 0.399 0.601 35 H 0.165 0.835 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.415 19.822 4.645 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C -0.319 4.319 4 C 0.007 3.993 5 N -0.268 5.268 6 C 0.351 3.649 7 O -0.375 6.375 8 C -0.078 4.078 9 C -0.137 4.137 10 C 0.083 3.917 11 F -0.096 7.096 12 C 0.015 3.985 13 O -0.285 6.285 14 C 0.081 3.919 15 F -0.096 7.096 16 C -0.107 4.107 17 N -0.146 5.146 18 N -0.096 5.096 19 C 0.140 3.860 20 C -0.576 4.576 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.178 0.822 32 H 0.247 0.753 33 H 0.172 0.828 34 H 0.257 0.743 35 H 0.183 0.817 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.244 18.809 4.089 22.292 hybrid contribution 0.392 0.127 -0.440 0.602 sum 11.636 18.936 3.649 22.523 Atomic orbital electron populations 1.20395 0.87763 1.03990 1.02636 1.21086 0.95019 0.87045 1.00650 1.21243 0.89569 0.99904 1.21169 1.18883 0.86877 0.89628 1.03905 1.42234 1.07982 1.04739 1.71823 1.17693 0.88453 0.81183 0.77543 1.90775 1.25441 1.73814 1.47424 1.19438 0.92374 0.93237 1.02739 1.21384 0.90224 1.01449 1.00657 1.17473 0.80822 0.89709 1.03723 1.91579 1.39149 1.85299 1.93582 1.18514 0.86522 0.88264 1.05151 1.84878 1.41810 1.67740 1.34083 1.17502 0.92357 0.78186 1.03887 1.91573 1.96412 1.28030 1.93598 1.21244 0.99508 0.91968 0.98018 1.77265 1.00135 1.08298 1.28931 1.49044 1.00856 1.07923 1.51781 1.19732 0.96060 0.71179 0.99050 1.21353 1.46889 0.98005 0.91307 0.91653 1.24932 0.94625 0.96035 0.98186 1.69925 1.44842 1.06986 1.31118 0.86299 0.77910 0.78819 0.83664 1.19549 1.20630 1.20611 0.90980 0.89822 0.90517 0.82210 0.75284 0.82760 0.74334 0.81716 0.92910 0.92667 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 9.89 36.01 0.36 -1.10 16 2 C 0.09 1.88 6.92 -82.28 -0.57 1.31 16 3 C -0.29 -5.59 9.52 -39.83 -0.38 -5.96 16 4 C 0.26 4.96 8.11 -154.44 -1.25 3.71 16 5 N -0.62 -8.79 5.40 -12.06 -0.07 -8.86 16 6 C 0.57 7.41 7.73 -12.45 -0.10 7.31 16 7 O -0.50 -7.95 13.46 5.28 0.07 -7.88 16 8 C -0.07 -0.71 5.87 -104.97 -0.62 -1.32 16 9 C -0.12 -0.93 9.51 -39.13 -0.37 -1.30 16 10 C 0.10 0.84 7.30 -39.38 -0.29 0.56 16 11 F -0.12 -1.06 17.10 2.25 0.04 -1.02 16 12 C 0.06 0.51 6.72 -38.95 -0.26 0.25 16 13 O -0.47 -3.47 13.21 -19.19 -0.25 -3.72 16 14 C 0.10 0.85 7.30 -39.38 -0.29 0.57 16 15 F -0.12 -1.07 17.10 2.25 0.04 -1.03 16 16 C -0.09 -0.77 9.56 -39.14 -0.37 -1.15 16 17 N -0.32 -6.95 12.59 31.43 0.40 -6.56 16 18 N -0.31 -7.16 3.59 -58.33 -0.21 -7.37 16 19 C 0.26 6.40 5.81 -5.19 -0.03 6.37 16 20 C -0.54 -14.43 9.39 -34.44 -0.32 -14.76 16 21 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 24 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.47 7.71 -51.93 -0.40 1.07 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.16 2.97 5.91 -52.48 -0.31 2.66 16 32 H 0.41 4.53 6.84 -40.82 -0.28 4.25 16 33 H 0.15 0.94 6.39 -52.49 -0.34 0.60 16 34 H 0.40 0.93 9.06 45.56 0.41 1.35 16 35 H 0.17 1.40 7.64 -52.48 -0.40 1.00 16 36 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.06 1.36 7.65 -51.93 -0.40 0.96 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -32.56 347.44 -6.15 -38.71 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -2.52 Total: 4.45 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -4.59 Total: -3.85 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.86 Total: -46.60 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.18 Total: -11.60 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.08 Total: -2.05 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.56 -6.15 -38.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436965475.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.761 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds