Wall clock time and date at job start Tue Mar 31 2020 19:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40092 * 125.97365 * 180.13104 * 4 3 2 6 6 C 1.34773 * 120.00080 * 0.31318 * 5 4 3 7 7 O 1.21595 * 120.00092 * 0.02562 * 6 5 4 8 8 C 1.47582 * 120.00095 * 179.97438 * 6 5 4 9 9 C 1.39736 * 120.07129 * 359.73247 * 8 6 5 10 10 C 1.37940 * 119.91755 * 179.76454 * 9 8 6 11 11 F 1.35103 * 119.95830 * 180.24910 * 10 9 8 12 12 C 1.39088 * 120.07484 * 0.48344 * 10 9 8 13 13 O 1.35826 * 119.91925 * 179.74556 * 12 10 9 14 14 C 1.39092 * 120.15823 * 359.76497 * 12 10 9 15 15 F 1.35103 * 119.96500 * 179.97438 * 14 12 10 16 16 C 1.37933 * 120.07162 * 0.02562 * 14 12 10 17 17 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46498 * 125.97410 * 359.96275 * 18 2 1 20 20 C 1.50702 * 109.47036 * 90.00121 * 19 18 2 21 21 H 1.08000 * 120.00135 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00214 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99653 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00146 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47144 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47003 * 120.00274 * 24 22 20 27 27 H 1.48499 * 109.47189 * 240.00201 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08005 * 126.06881 * 359.97438 * 3 2 1 32 32 H 0.97004 * 119.99910 * 180.31575 * 5 4 3 33 33 H 1.07995 * 120.04622 * 359.96971 * 9 8 6 34 34 H 0.96702 * 113.99547 * 270.01760 * 13 12 10 35 35 H 1.08008 * 120.03279 * 179.97438 * 16 14 12 36 36 H 1.08993 * 109.47060 * 209.99617 * 19 18 2 37 37 H 1.08996 * 109.47079 * 330.00441 * 19 18 2 38 38 H 0.96998 * 120.00028 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7730 1.4744 0.0073 6 6 4.6363 2.8152 0.0141 7 8 3.5270 3.3132 0.0175 8 6 5.8329 3.6790 0.0186 9 6 7.1084 3.1083 0.0215 10 6 8.2247 3.9187 0.0208 11 9 9.4583 3.3678 0.0184 12 6 8.0816 5.3022 0.0274 13 8 9.1830 6.0971 0.0319 14 6 6.8135 5.8736 0.0298 15 9 6.6791 7.2179 0.0367 16 6 5.6930 5.0692 0.0261 17 7 3.6337 -0.6578 -0.0035 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0127 20 6 1.6943 -2.9553 -1.4359 21 1 1.9099 -2.2834 -2.2535 22 6 1.2767 -4.2437 -1.6941 23 7 1.0137 -5.0617 -0.6985 24 14 1.0845 -4.8273 -3.4582 25 1 1.4395 -3.7236 -4.3862 26 1 1.9839 -5.9845 -3.6974 27 1 -0.3232 -5.2375 -3.6933 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1211 -0.0004 32 1 5.6580 1.0772 0.0049 33 1 7.2202 2.0342 0.0209 34 1 9.5015 6.3228 0.9166 35 1 4.7086 5.5136 0.0284 36 1 2.5848 -3.1072 0.4975 37 1 0.8915 -2.5584 0.5012 38 1 0.7196 -5.9679 -0.8801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436965475.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:52 Heat of formation + Delta-G solvation = -78.104522 kcal Electronic energy + Delta-G solvation = -27437.973136 eV Core-core repulsion = 22918.067352 eV Total energy + Delta-G solvation = -4519.905783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.18690 -50.15445 -42.41587 -41.28908 -39.97651 -37.90491 -36.49093 -35.36356 -33.22453 -32.66959 -31.66054 -31.31979 -28.61227 -27.88853 -25.96619 -24.76547 -24.26401 -22.81402 -21.39965 -21.08163 -20.01928 -19.26271 -18.79154 -18.76188 -17.75681 -17.63096 -17.52791 -17.16431 -16.68362 -16.64256 -16.48607 -16.32176 -16.17585 -15.71588 -15.62370 -15.47886 -14.71405 -14.40591 -14.34697 -13.89274 -13.74325 -13.67613 -13.67071 -13.54689 -13.17885 -12.98074 -12.82775 -12.69353 -12.26857 -12.11978 -12.00747 -11.61559 -11.38516 -11.16989 -10.73482 -10.12494 -10.10171 -9.61118 -9.17494 -8.33049 -6.50213 -0.86967 -0.34323 0.89537 1.19132 1.31826 1.37427 1.40083 1.52254 1.92330 2.12811 2.33092 2.37672 2.40310 2.92022 2.97203 3.00222 3.22603 3.46168 3.68757 3.83355 4.10793 4.16916 4.38307 4.41381 4.45452 4.58260 4.73142 4.78192 4.78909 4.87289 4.97645 4.99094 5.13005 5.25345 5.29365 5.54138 5.81062 5.87991 6.14955 6.24796 6.44291 6.62170 6.82165 7.00822 7.20970 8.73267 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.002261 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.870331 B =12378.395125 C =13173.714277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.088 3.912 3 C -0.296 4.296 4 C 0.271 3.729 5 N -0.615 5.615 6 C 0.572 3.428 7 O -0.529 6.529 8 C -0.083 4.083 9 C -0.100 4.100 10 C 0.097 3.903 11 F -0.121 7.121 12 C 0.081 3.919 13 O -0.485 6.485 14 C 0.095 3.905 15 F -0.122 7.122 16 C -0.078 4.078 17 N -0.353 5.353 18 N -0.341 5.341 19 C 0.275 3.725 20 C -0.552 4.552 21 H 0.050 0.950 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.275 1.275 27 H -0.268 1.268 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.171 0.829 32 H 0.425 0.575 33 H 0.172 0.828 34 H 0.422 0.578 35 H 0.166 0.834 36 H 0.026 0.974 37 H 0.053 0.947 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.133 21.113 4.112 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C -0.326 4.326 4 C 0.017 3.983 5 N -0.265 5.265 6 C 0.360 3.640 7 O -0.404 6.404 8 C -0.086 4.086 9 C -0.119 4.119 10 C 0.077 3.923 11 F -0.099 7.099 12 C 0.033 3.967 13 O -0.299 6.299 14 C 0.075 3.925 15 F -0.100 7.100 16 C -0.098 4.098 17 N -0.183 5.183 18 N -0.124 5.124 19 C 0.156 3.844 20 C -0.590 4.590 21 H 0.068 0.932 22 C -0.178 4.178 23 N -0.556 5.556 24 Si 0.794 3.206 25 H -0.198 1.198 26 H -0.200 1.200 27 H -0.193 1.193 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.188 0.812 32 H 0.264 0.736 33 H 0.190 0.810 34 H 0.284 0.716 35 H 0.184 0.816 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.997 20.129 3.583 23.705 hybrid contribution 0.291 -0.096 -0.218 0.376 sum 12.288 20.033 3.365 23.741 Atomic orbital electron populations 1.20517 0.85338 1.04450 1.04172 1.21768 0.96719 0.86405 0.99312 1.21455 0.89734 1.00077 1.21347 1.19196 0.88482 0.89223 1.01409 1.42319 1.07388 1.04805 1.71940 1.18150 0.89185 0.80691 0.75957 1.90749 1.26948 1.74142 1.48573 1.18990 0.91354 0.92787 1.05500 1.21473 0.89378 1.02358 0.98718 1.17421 0.80703 0.89712 1.04475 1.91578 1.39308 1.85346 1.93710 1.18534 0.86632 0.88336 1.03197 1.84817 1.41393 1.67523 1.36212 1.17413 0.92342 0.77981 1.04744 1.91566 1.96427 1.28265 1.93747 1.21239 0.99823 0.91691 0.97040 1.77183 1.00146 1.09846 1.31162 1.48816 1.01717 1.07606 1.54241 1.19262 0.95000 0.72383 0.97766 1.21463 1.47428 0.98317 0.91788 0.93212 1.25713 0.93998 0.95939 1.02133 1.70003 1.45138 1.07435 1.33014 0.85320 0.78434 0.78098 0.78704 1.19824 1.20047 1.19282 0.88821 0.91470 0.87821 0.81174 0.73560 0.81022 0.71638 0.81607 0.95618 0.92924 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.75 9.89 71.24 0.70 -2.05 16 2 C 0.09 3.56 6.92 41.38 0.29 3.84 16 3 C -0.30 -11.34 9.52 22.11 0.21 -11.13 16 4 C 0.27 10.32 8.11 133.35 1.08 11.40 16 5 N -0.61 -16.83 5.40 -310.34 -1.67 -18.50 16 6 C 0.57 14.29 7.73 86.71 0.67 14.96 16 7 O -0.53 -16.28 13.46 -4.02 -0.05 -16.33 16 8 C -0.08 -1.43 5.87 -20.09 -0.12 -1.55 16 9 C -0.10 -1.35 9.51 22.56 0.21 -1.14 16 10 C 0.10 1.37 7.30 22.40 0.16 1.53 16 11 F -0.12 -1.90 17.10 44.97 0.77 -1.13 16 12 C 0.08 1.13 6.72 22.68 0.15 1.28 16 13 O -0.48 -5.88 13.21 -91.60 -1.21 -7.09 16 14 C 0.10 1.43 7.30 22.40 0.16 1.59 16 15 F -0.12 -2.01 17.10 44.97 0.77 -1.24 16 16 C -0.08 -1.25 9.56 22.56 0.22 -1.03 16 17 N -0.35 -15.83 12.59 -54.48 -0.69 -16.51 16 18 N -0.34 -15.96 3.59 -338.46 -1.22 -17.18 16 19 C 0.27 14.16 5.81 85.63 0.50 14.66 16 20 C -0.55 -30.34 9.39 25.60 0.24 -30.10 16 21 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 22 C 0.02 1.25 5.46 84.66 0.46 1.71 16 23 N -0.92 -51.04 13.29 21.45 0.28 -50.76 16 24 Si 0.97 42.47 29.54 68.60 2.03 44.50 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.07 2.36 7.71 -2.39 -0.02 2.34 16 30 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 31 H 0.17 6.16 5.91 -2.91 -0.02 6.15 16 32 H 0.42 8.82 6.84 -92.71 -0.63 8.19 16 33 H 0.17 1.66 6.39 -2.91 -0.02 1.64 16 34 H 0.42 0.85 9.06 -74.06 -0.67 0.18 16 35 H 0.17 2.61 7.64 -2.91 -0.02 2.59 16 36 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 2.69 7.65 -2.39 -0.02 2.67 16 38 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -70.26 347.44 3.82 -66.44 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -0.13 Total: 13.83 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 4.94 Total: 3.98 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -3.29 Total: -102.95 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.26 Total: -23.43 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 1.54 Total: -2.37 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -70.26 3.82 -66.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436965475.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.665 kcal (2) G-P(sol) polarization free energy of solvation -70.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds