Wall clock time and date at job start Tue Mar 31 2020 20:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.56602 * 2 1 4 4 C 1.50436 * 109.56645 * 239.63938 * 2 1 3 5 5 O 1.21274 * 118.49052 * 47.49278 * 4 2 1 6 6 N 1.33381 * 123.02018 * 227.46703 * 4 2 1 7 7 C 1.45647 * 124.59034 * 4.32437 * 6 4 2 8 8 C 1.53463 * 110.74114 * 337.97444 * 7 6 4 9 9 N 1.47053 * 109.56683 * 120.23336 * 2 1 3 10 10 C 1.34777 * 121.35505 * 342.53376 * 9 2 1 11 11 O 1.21588 * 119.99499 * 356.66192 * 10 9 2 12 12 N 1.34779 * 120.00152 * 176.38171 * 10 9 2 13 13 C 1.39270 * 119.99790 * 183.59197 * 12 10 9 14 14 C 1.39463 * 119.84221 * 335.93318 * 13 12 10 15 15 C 1.36374 * 120.17947 * 180.02562 * 14 13 12 16 16 C 1.40900 * 119.84919 * 359.97438 * 15 14 13 17 17 C 1.41149 * 120.15806 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99883 * 20.48215 * 17 16 15 19 19 C 1.39889 * 119.99762 * 200.49275 * 17 16 15 20 20 N 1.30876 * 120.00179 * 18.67203 * 19 17 16 21 21 Si 1.86806 * 119.99708 * 198.67152 * 19 17 16 22 22 H 1.48498 * 109.46787 * 89.99987 * 21 19 17 23 23 H 1.48496 * 109.47011 * 209.99838 * 21 19 17 24 24 H 1.48501 * 109.47074 * 329.99983 * 21 19 17 25 25 C 1.40839 * 119.67971 * 359.97438 * 16 15 14 26 26 C 1.36477 * 119.82128 * 359.74729 * 25 16 15 27 27 Cl 1.73599 * 119.92693 * 180.24493 * 26 25 16 28 28 H 1.08995 * 109.46919 * 315.48257 * 1 2 3 29 29 H 1.08992 * 109.47074 * 75.48347 * 1 2 3 30 30 H 1.09002 * 109.46958 * 195.48643 * 1 2 3 31 31 H 0.97001 * 117.70866 * 184.29955 * 6 4 2 32 32 H 1.08996 * 109.21928 * 98.43274 * 7 6 4 33 33 H 1.09007 * 109.21758 * 217.80962 * 7 6 4 34 34 H 1.09006 * 109.85267 * 287.32346 * 8 7 6 35 35 H 1.09002 * 109.84531 * 166.50649 * 8 7 6 36 36 H 0.96997 * 119.99650 * 3.59707 * 12 10 9 37 37 H 1.08000 * 119.91132 * 0.02562 * 14 13 12 38 38 H 1.08001 * 120.07563 * 179.97438 * 15 14 13 39 39 H 0.97006 * 120.00110 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.08690 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0339 -0.7165 -1.2231 5 8 1.5490 -0.4359 -2.2987 6 7 2.9896 -1.6457 -1.1790 7 6 3.5987 -2.1481 0.0449 8 6 3.4268 -1.1414 1.1904 9 7 2.0225 -0.6977 1.1971 10 6 1.2229 -0.9171 2.2597 11 8 0.0873 -0.4826 2.2658 12 7 1.6802 -1.6229 3.3129 13 6 0.8310 -1.9136 4.3778 14 6 -0.2785 -1.1045 4.6216 15 6 -1.1142 -1.3826 5.6627 16 6 -0.8551 -2.4909 6.4933 17 6 -1.7162 -2.7850 7.5724 18 1 -2.7236 -2.3958 7.5809 19 6 -1.2645 -3.5805 8.6308 20 7 0.0193 -3.7499 8.8205 21 14 -2.4939 -4.4008 9.7733 22 1 -2.8447 -5.7423 9.2418 23 1 -1.8944 -4.5448 11.1242 24 1 -3.7198 -3.5674 9.8619 25 6 0.2664 -3.3045 6.2408 26 6 1.0909 -3.0173 5.1918 27 17 2.4705 -4.0220 4.8743 28 1 -0.3633 0.7327 0.7205 29 1 -0.3633 0.2576 -0.9948 30 1 -0.3633 -0.9904 0.2744 31 1 3.3008 -2.0130 -2.0212 32 1 3.1266 -3.0913 0.3196 33 1 4.6621 -2.3157 -0.1260 34 1 4.0823 -0.2849 1.0320 35 1 3.6665 -1.6179 2.1409 36 1 2.6007 -1.9282 3.3292 37 1 -0.4763 -0.2555 3.9841 38 1 -1.9727 -0.7547 5.8502 39 1 0.3325 -4.3018 9.5543 40 1 0.4710 -4.1559 6.8730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455698330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:58 Heat of formation + Delta-G solvation = -38.537866 kcal Electronic energy + Delta-G solvation = -26891.327086 eV Core-core repulsion = 22924.933721 eV Total energy + Delta-G solvation = -3966.393364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.26587 -40.85799 -39.38834 -37.64216 -37.21804 -36.44119 -35.35612 -34.95092 -32.48637 -31.19357 -30.73924 -29.45852 -27.11375 -26.06915 -24.23515 -23.70009 -22.74785 -21.66933 -20.21867 -19.53407 -19.18748 -18.58980 -17.98491 -17.39508 -17.11274 -17.00189 -16.33271 -16.08524 -16.02023 -15.68070 -15.23191 -14.95109 -14.68280 -14.40845 -14.23265 -13.99744 -13.83812 -13.62432 -13.36479 -13.09527 -12.88731 -12.86054 -12.80267 -12.61270 -12.55071 -12.16967 -11.97533 -11.78655 -11.53049 -11.47665 -11.37804 -10.75152 -10.24747 -10.19856 -9.80166 -9.34839 -8.85782 -8.63699 -6.27456 0.71366 1.02410 1.28447 1.41486 1.41830 1.47010 1.50805 1.54374 2.04474 2.21270 2.22293 2.69845 2.83238 3.36793 3.64629 3.68341 3.88921 4.03977 4.13161 4.26718 4.41701 4.57210 4.70823 4.73765 4.85692 4.92652 4.93511 5.03583 5.12067 5.27253 5.28531 5.43364 5.49265 5.59703 5.73664 5.87232 5.95131 6.08771 6.13745 6.29328 6.54460 6.88289 6.90350 6.91604 7.03485 7.52986 8.27909 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.022614 B = 0.003028 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.847558 B = 9245.959297 C =10147.198331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.155 3.845 3 H 0.123 0.877 4 C 0.517 3.483 5 O -0.582 6.582 6 N -0.704 5.704 7 C 0.094 3.906 8 C 0.084 3.916 9 N -0.629 5.629 10 C 0.703 3.297 11 O -0.594 6.594 12 N -0.652 5.652 13 C 0.031 3.969 14 C -0.090 4.090 15 C -0.227 4.227 16 C 0.079 3.921 17 C -0.484 4.484 18 H 0.079 0.921 19 C 0.038 3.962 20 N -0.811 5.811 21 Si 0.981 3.019 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.260 1.260 25 C -0.171 4.171 26 C -0.025 4.025 27 Cl -0.088 7.088 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.409 0.591 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.407 0.593 37 H 0.140 0.860 38 H 0.102 0.898 39 H 0.292 0.708 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.140 1.073 -11.626 16.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.048 3.952 3 H 0.140 0.860 4 C 0.302 3.698 5 O -0.462 6.462 6 N -0.355 5.355 7 C -0.031 4.031 8 C -0.038 4.038 9 N -0.369 5.369 10 C 0.406 3.594 11 O -0.473 6.473 12 N -0.302 5.302 13 C -0.065 4.065 14 C -0.110 4.110 15 C -0.247 4.247 16 C 0.076 3.924 17 C -0.513 4.513 18 H 0.097 0.903 19 C -0.179 4.179 20 N -0.436 5.436 21 Si 0.802 3.198 22 H -0.188 1.188 23 H -0.191 1.191 24 H -0.183 1.183 25 C -0.191 4.191 26 C -0.054 4.054 27 Cl -0.059 7.059 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.246 0.754 32 H 0.087 0.913 33 H 0.154 0.846 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.247 0.753 37 H 0.158 0.842 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.352 1.416 -11.851 16.472 hybrid contribution 0.114 -0.802 0.445 0.924 sum 11.465 0.614 -11.407 16.185 Atomic orbital electron populations 1.21845 0.91330 1.03206 1.01560 1.21173 0.97129 0.96769 0.80104 0.85962 1.20373 0.79084 0.79971 0.90347 1.90758 1.58141 1.66356 1.30985 1.45301 1.38415 1.40140 1.11671 1.22090 1.01390 0.96556 0.83036 1.22501 0.80928 0.99934 1.00415 1.47425 1.12486 1.62223 1.14800 1.15862 0.84018 0.79652 0.79903 1.90841 1.19389 1.56597 1.80499 1.42055 1.14200 1.56757 1.17155 1.16688 0.97595 0.98337 0.93860 1.20975 0.93903 0.99271 0.96813 1.20926 1.03113 1.00127 1.00543 1.17861 0.91999 0.90059 0.92473 1.19813 0.99929 1.28280 1.03257 0.90257 1.26742 0.97393 0.94581 0.99149 1.69847 1.16081 1.29749 1.27961 0.85201 0.78654 0.79018 0.76902 1.18773 1.19092 1.18330 1.20921 0.97616 1.02475 0.98109 1.20266 0.92152 0.93245 0.99729 1.98235 1.43218 1.69025 1.95453 0.90340 0.91884 0.93870 0.75401 0.91272 0.84594 0.86931 0.87454 0.75339 0.84232 0.87974 0.89754 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.48 7.69 71.98 0.55 -2.93 16 2 C 0.15 3.55 3.67 44.06 0.16 3.71 16 3 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.52 11.63 7.35 87.79 0.65 12.28 16 5 O -0.58 -17.38 16.92 -3.01 -0.05 -17.43 16 6 N -0.70 -10.23 5.42 -466.30 -2.53 -12.76 16 7 C 0.09 0.85 7.35 86.70 0.64 1.48 16 8 C 0.08 1.02 6.55 86.39 0.57 1.58 16 9 N -0.63 -14.06 2.97 -816.17 -2.42 -16.48 16 10 C 0.70 22.33 7.89 179.05 1.41 23.74 16 11 O -0.59 -23.08 9.29 -3.99 -0.04 -23.12 16 12 N -0.65 -21.07 5.10 -316.69 -1.61 -22.68 16 13 C 0.03 1.28 6.49 38.58 0.25 1.53 16 14 C -0.09 -4.11 8.73 22.13 0.19 -3.92 16 15 C -0.23 -11.22 9.74 22.49 0.22 -11.00 16 16 C 0.08 4.17 5.62 -21.28 -0.12 4.05 16 17 C -0.48 -25.20 9.05 23.38 0.21 -24.99 16 18 H 0.08 4.01 7.91 -2.91 -0.02 3.98 16 19 C 0.04 1.82 5.16 85.24 0.44 2.26 16 20 N -0.81 -40.04 10.74 21.82 0.23 -39.80 16 21 Si 0.98 36.63 29.60 68.60 2.03 38.66 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 23 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 24 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 25 C -0.17 -8.56 8.44 22.49 0.19 -8.37 16 26 C -0.03 -1.09 6.30 22.18 0.14 -0.95 16 27 Cl -0.09 -3.01 27.73 -2.72 -0.08 -3.08 16 28 H 0.08 2.42 6.79 -2.39 -0.02 2.40 16 29 H 0.06 1.75 7.41 -2.39 -0.02 1.73 16 30 H 0.04 1.45 6.97 -2.39 -0.02 1.43 16 31 H 0.41 4.76 8.80 -92.71 -0.82 3.95 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.14 0.14 8.14 -2.38 -0.02 0.12 16 34 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.11 1.14 5.66 -2.39 -0.01 1.13 16 36 H 0.41 10.48 5.23 -92.71 -0.49 10.00 16 37 H 0.14 6.35 5.39 -2.91 -0.02 6.33 16 38 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 39 H 0.29 12.94 8.30 -92.70 -0.77 12.17 16 40 H 0.13 6.57 5.88 -2.91 -0.02 6.56 16 Total: -1.00 -67.04 338.07 0.87 -66.17 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: -0.17 Total: 32.05 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.50 Total: -1.52 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -6.33 Total: -91.73 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.09 Total: -40.55 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Atomic # 17 Polarization: -3.01 SS G_CDS: -0.08 Total: -3.08 kcal Total: -67.04 0.87 -66.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455698330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.634 kcal (2) G-P(sol) polarization free energy of solvation -67.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds