Wall clock time and date at job start Tue Mar 31 2020 20:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.56745 * 2 1 4 4 C 1.50443 * 109.56897 * 120.24214 * 2 1 3 5 5 O 1.21274 * 118.48312 * 287.20985 * 4 2 1 6 6 N 1.33379 * 123.02321 * 107.23664 * 4 2 1 7 7 C 1.45655 * 124.59030 * 4.31404 * 6 4 2 8 8 C 1.52992 * 110.77229 * 338.10593 * 7 6 4 9 9 N 1.47051 * 109.66777 * 239.70698 * 2 1 3 10 10 C 1.34779 * 121.35247 * 102.83106 * 9 2 1 11 11 O 1.21585 * 119.99827 * 174.79672 * 10 9 2 12 12 N 1.34773 * 120.00126 * 354.79794 * 10 9 2 13 13 C 1.39280 * 120.00028 * 184.38503 * 12 10 9 14 14 C 1.39461 * 119.83609 * 330.73672 * 13 12 10 15 15 C 1.36380 * 120.17790 * 179.97438 * 14 13 12 16 16 C 1.40890 * 119.84633 * 0.02562 * 15 14 13 17 17 C 1.41163 * 120.15309 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00187 * 29.59136 * 17 16 15 19 19 C 1.39884 * 119.99583 * 209.59192 * 17 16 15 20 20 N 1.30885 * 120.00143 * 10.46954 * 19 17 16 21 21 Si 1.86800 * 119.99783 * 190.47241 * 19 17 16 22 22 H 1.48495 * 109.47056 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47207 * 120.00125 * 21 19 17 24 24 H 1.48508 * 109.47032 * 239.99875 * 21 19 17 25 25 C 1.40835 * 119.68596 * 0.02562 * 16 15 14 26 26 C 1.36478 * 119.81876 * 359.73438 * 25 16 15 27 27 Cl 1.73600 * 119.92857 * 180.25406 * 26 25 16 28 28 H 1.09000 * 109.46984 * 299.99614 * 1 2 3 29 29 H 1.08995 * 109.47535 * 59.99620 * 1 2 3 30 30 H 1.09000 * 109.46960 * 179.97438 * 1 2 3 31 31 H 0.97000 * 117.70476 * 184.34159 * 6 4 2 32 32 H 1.08992 * 109.21284 * 98.43775 * 7 6 4 33 33 H 1.08992 * 109.21426 * 217.81455 * 7 6 4 34 34 H 1.09000 * 109.71933 * 166.39957 * 8 7 6 35 35 H 1.09001 * 109.71543 * 287.00761 * 8 7 6 36 36 H 0.96995 * 120.00148 * 4.37926 * 12 10 9 37 37 H 1.08006 * 119.91554 * 359.96288 * 14 13 12 38 38 H 1.07995 * 120.07457 * 179.97438 * 15 14 13 39 39 H 0.97003 * 119.99941 * 179.97438 * 20 19 17 40 40 H 1.08005 * 120.09186 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0270 0.0000 4 6 2.0339 -0.7139 1.2246 5 8 1.9304 -0.1620 2.2995 6 7 2.5896 -1.9257 1.1825 7 6 2.8614 -2.6687 -0.0405 8 6 1.9779 -2.1703 -1.1858 9 7 2.0249 -0.6985 -1.1956 10 6 2.5016 -0.0192 -2.2576 11 8 2.9916 -0.6206 -3.1939 12 7 2.4352 1.3267 -2.2818 13 6 2.8435 2.0239 -3.4163 14 6 3.8348 1.4902 -4.2393 15 6 4.2395 2.1666 -5.3522 16 6 3.6539 3.4081 -5.6698 17 6 4.0683 4.1140 -6.8199 18 1 4.4332 3.5754 -7.6819 19 6 4.0062 5.5113 -6.8429 20 7 3.7625 6.1738 -5.7408 21 14 4.2712 6.4316 -8.4468 22 1 4.5284 5.4589 -9.5389 23 1 3.0589 7.2272 -8.7671 24 1 5.4376 7.3404 -8.3091 25 6 2.6541 3.9418 -4.8339 26 6 2.2557 3.2513 -3.7261 27 17 1.0187 3.9035 -2.6974 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 2.8291 -2.3416 2.0254 32 1 3.9088 -2.5398 -0.3131 33 1 2.6628 -3.7266 0.1308 34 1 2.3522 -2.5567 -2.1339 35 1 0.9522 -2.5052 -1.0315 36 1 2.1030 1.8098 -1.5091 37 1 4.2835 0.5387 -3.9946 38 1 5.0077 1.7520 -5.9881 39 1 3.7198 7.1428 -5.7567 40 1 2.2004 4.8928 -5.0714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455698336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:02 Heat of formation + Delta-G solvation = -34.226251 kcal Electronic energy + Delta-G solvation = -26796.450981 eV Core-core repulsion = 22830.244583 eV Total energy + Delta-G solvation = -3966.206399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13991 -39.64379 -37.83051 -36.53776 -35.55762 -35.01880 -34.49249 -32.99958 -31.38045 -29.61996 -29.40586 -28.46750 -25.52655 -24.67066 -23.82469 -21.93986 -21.08180 -20.44130 -18.77744 -18.61655 -17.56904 -17.46263 -16.94730 -16.21558 -15.88666 -15.35690 -15.21769 -14.86080 -14.55153 -14.33072 -14.17705 -13.74110 -13.40657 -12.99173 -12.94860 -12.60708 -12.53002 -12.39528 -12.29754 -11.91275 -11.84416 -11.71077 -11.31151 -11.13960 -11.01880 -10.53460 -10.49760 -10.38127 -10.13871 -9.91439 -9.66420 -9.47583 -9.30740 -8.93693 -8.82044 -7.56972 -7.07098 -6.81595 -4.44133 2.25618 2.37566 2.48279 2.83109 2.94776 3.04456 3.04814 3.09803 3.14317 3.45479 3.87984 3.99279 4.09196 4.45759 4.51272 4.63903 4.76672 4.80923 4.96386 5.37195 5.42681 5.43105 5.48595 5.51899 5.85103 6.04982 6.14055 6.40010 6.49073 6.61458 6.79367 6.90352 6.92835 7.02007 7.12630 7.30279 7.59857 7.66114 7.82942 7.87533 8.07478 8.20177 8.40758 8.70334 8.75604 8.85058 10.11728 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.003012 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.413017 B = 9294.625425 C =10089.112114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.127 3.873 3 H 0.115 0.885 4 C 0.521 3.479 5 O -0.546 6.546 6 N -0.715 5.715 7 C 0.094 3.906 8 C 0.114 3.886 9 N -0.635 5.635 10 C 0.708 3.292 11 O -0.569 6.569 12 N -0.659 5.659 13 C 0.021 3.979 14 C -0.077 4.077 15 C -0.206 4.206 16 C 0.111 3.889 17 C -0.454 4.454 18 H 0.082 0.918 19 C 0.072 3.928 20 N -0.795 5.795 21 Si 0.913 3.087 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.138 4.138 26 C -0.020 4.020 27 Cl -0.121 7.121 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.400 0.600 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.394 0.606 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.282 0.718 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 -12.452 9.694 16.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 H 0.133 0.867 4 C 0.306 3.694 5 O -0.422 6.422 6 N -0.367 5.367 7 C -0.031 4.031 8 C -0.009 4.009 9 N -0.376 5.376 10 C 0.410 3.590 11 O -0.446 6.446 12 N -0.306 5.306 13 C -0.073 4.073 14 C -0.097 4.097 15 C -0.227 4.227 16 C 0.108 3.892 17 C -0.483 4.483 18 H 0.101 0.899 19 C -0.146 4.146 20 N -0.421 5.421 21 Si 0.738 3.262 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.199 1.199 25 C -0.159 4.159 26 C -0.048 4.048 27 Cl -0.093 7.093 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.235 0.765 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.134 0.866 35 H 0.094 0.906 36 H 0.230 0.770 37 H 0.146 0.854 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.519 -12.186 9.504 16.101 hybrid contribution -0.035 0.666 0.224 0.704 sum -4.555 -11.519 9.728 15.750 Atomic orbital electron populations 1.22079 0.91861 1.03377 1.04176 1.21321 0.96765 0.97530 0.82433 0.86694 1.20177 0.77017 0.81438 0.90753 1.90792 1.56780 1.64691 1.29971 1.45345 1.62665 1.18216 1.10473 1.21852 1.00770 0.96058 0.84451 1.21775 0.99963 0.79041 1.00144 1.47491 1.67838 1.06331 1.15913 1.15720 0.79336 0.81957 0.81946 1.90866 1.50150 1.67985 1.35639 1.42181 1.66997 1.04054 1.17373 1.16688 1.03565 0.94225 0.92832 1.20608 0.94671 0.99424 0.94966 1.20855 1.03725 0.98825 0.99268 1.17575 0.88762 0.90776 0.92099 1.19575 1.37328 0.91080 1.00331 0.89949 1.25941 0.92664 0.98283 0.97711 1.69795 1.35376 1.09427 1.27479 0.86172 0.78688 0.79535 0.81835 1.18373 1.19697 1.19920 1.20918 0.99206 1.01379 0.94390 1.20326 0.94075 0.95293 0.95127 1.98251 1.55401 1.86644 1.68987 0.90193 0.90324 0.91713 0.76490 0.90823 0.89194 0.86558 0.90565 0.76955 0.85408 0.87951 0.90694 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.39 37.16 0.35 -1.15 16 2 C 0.13 1.45 2.91 -68.91 -0.20 1.25 16 3 H 0.12 1.39 6.07 -51.93 -0.32 1.07 16 4 C 0.52 6.09 7.10 -11.73 -0.08 6.01 16 5 O -0.55 -8.15 17.80 5.56 0.10 -8.05 16 6 N -0.72 -6.15 5.42 -61.32 -0.33 -6.48 16 7 C 0.09 0.64 7.34 -4.50 -0.03 0.61 16 8 C 0.11 1.03 6.39 -3.63 -0.02 1.00 16 9 N -0.63 -7.85 2.63 -172.24 -0.45 -8.30 16 10 C 0.71 11.93 8.19 -86.92 -0.71 11.21 16 11 O -0.57 -11.25 12.89 5.29 0.07 -11.18 16 12 N -0.66 -11.78 5.00 -14.07 -0.07 -11.85 16 13 C 0.02 0.45 6.41 -83.52 -0.54 -0.08 16 14 C -0.08 -1.74 8.67 -39.80 -0.34 -2.09 16 15 C -0.21 -4.94 9.74 -39.25 -0.38 -5.32 16 16 C 0.11 2.84 5.54 -106.80 -0.59 2.24 16 17 C -0.45 -11.49 9.04 -37.86 -0.34 -11.83 16 18 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 19 C 0.07 1.72 5.25 -17.34 -0.09 1.63 16 20 N -0.80 -19.79 10.87 55.54 0.60 -19.18 16 21 Si 0.91 18.08 29.57 -169.99 -5.03 13.05 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 25 C -0.14 -3.44 8.36 -39.24 -0.33 -3.77 16 26 C -0.02 -0.44 6.30 -39.72 -0.25 -0.69 16 27 Cl -0.12 -2.30 27.82 -51.86 -1.44 -3.74 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.54 7.51 -51.93 -0.39 0.15 16 31 H 0.40 2.84 8.80 -40.82 -0.36 2.48 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.12 1.15 7.08 -51.93 -0.37 0.78 16 35 H 0.08 0.55 7.52 -51.93 -0.39 0.16 16 36 H 0.39 6.28 5.56 -40.82 -0.23 6.06 16 37 H 0.13 2.87 5.75 -52.48 -0.30 2.56 16 38 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 39 H 0.28 6.40 8.30 -40.82 -0.34 6.07 16 40 H 0.14 3.49 6.26 -52.48 -0.33 3.16 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -30.13 345.28 -9.26 -39.39 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -4.34 Total: 12.11 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -3.57 Total: -0.97 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.25 Total: -45.81 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.17 Total: -19.23 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -1.44 Total: -3.74 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.13 -9.26 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455698336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.160 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds