Wall clock time and date at job start Tue Mar 31 2020 20:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.56745 * 2 1 4 4 C 1.50443 * 109.56897 * 120.24214 * 2 1 3 5 5 O 1.21274 * 118.48312 * 287.20985 * 4 2 1 6 6 N 1.33379 * 123.02321 * 107.23664 * 4 2 1 7 7 C 1.45655 * 124.59030 * 4.31404 * 6 4 2 8 8 C 1.52992 * 110.77229 * 338.10593 * 7 6 4 9 9 N 1.47051 * 109.66777 * 239.70698 * 2 1 3 10 10 C 1.34779 * 121.35247 * 102.83106 * 9 2 1 11 11 O 1.21585 * 119.99827 * 174.79672 * 10 9 2 12 12 N 1.34773 * 120.00126 * 354.79794 * 10 9 2 13 13 C 1.39280 * 120.00028 * 184.38503 * 12 10 9 14 14 C 1.39461 * 119.83609 * 330.73672 * 13 12 10 15 15 C 1.36380 * 120.17790 * 179.97438 * 14 13 12 16 16 C 1.40890 * 119.84633 * 0.02562 * 15 14 13 17 17 C 1.41163 * 120.15309 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00187 * 29.59136 * 17 16 15 19 19 C 1.39884 * 119.99583 * 209.59192 * 17 16 15 20 20 N 1.30885 * 120.00143 * 10.46954 * 19 17 16 21 21 Si 1.86800 * 119.99783 * 190.47241 * 19 17 16 22 22 H 1.48495 * 109.47056 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47207 * 120.00125 * 21 19 17 24 24 H 1.48508 * 109.47032 * 239.99875 * 21 19 17 25 25 C 1.40835 * 119.68596 * 0.02562 * 16 15 14 26 26 C 1.36478 * 119.81876 * 359.73438 * 25 16 15 27 27 Cl 1.73600 * 119.92857 * 180.25406 * 26 25 16 28 28 H 1.09000 * 109.46984 * 299.99614 * 1 2 3 29 29 H 1.08995 * 109.47535 * 59.99620 * 1 2 3 30 30 H 1.09000 * 109.46960 * 179.97438 * 1 2 3 31 31 H 0.97000 * 117.70476 * 184.34159 * 6 4 2 32 32 H 1.08992 * 109.21284 * 98.43775 * 7 6 4 33 33 H 1.08992 * 109.21426 * 217.81455 * 7 6 4 34 34 H 1.09000 * 109.71933 * 166.39957 * 8 7 6 35 35 H 1.09001 * 109.71543 * 287.00761 * 8 7 6 36 36 H 0.96995 * 120.00148 * 4.37926 * 12 10 9 37 37 H 1.08006 * 119.91554 * 359.96288 * 14 13 12 38 38 H 1.07995 * 120.07457 * 179.97438 * 15 14 13 39 39 H 0.97003 * 119.99941 * 179.97438 * 20 19 17 40 40 H 1.08005 * 120.09186 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0270 0.0000 4 6 2.0339 -0.7139 1.2246 5 8 1.9304 -0.1620 2.2995 6 7 2.5896 -1.9257 1.1825 7 6 2.8614 -2.6687 -0.0405 8 6 1.9779 -2.1703 -1.1858 9 7 2.0249 -0.6985 -1.1956 10 6 2.5016 -0.0192 -2.2576 11 8 2.9916 -0.6206 -3.1939 12 7 2.4352 1.3267 -2.2818 13 6 2.8435 2.0239 -3.4163 14 6 3.8348 1.4902 -4.2393 15 6 4.2395 2.1666 -5.3522 16 6 3.6539 3.4081 -5.6698 17 6 4.0683 4.1140 -6.8199 18 1 4.4332 3.5754 -7.6819 19 6 4.0062 5.5113 -6.8429 20 7 3.7625 6.1738 -5.7408 21 14 4.2712 6.4316 -8.4468 22 1 4.5284 5.4589 -9.5389 23 1 3.0589 7.2272 -8.7671 24 1 5.4376 7.3404 -8.3091 25 6 2.6541 3.9418 -4.8339 26 6 2.2557 3.2513 -3.7261 27 17 1.0187 3.9035 -2.6974 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 2.8291 -2.3416 2.0254 32 1 3.9088 -2.5398 -0.3131 33 1 2.6628 -3.7266 0.1308 34 1 2.3522 -2.5567 -2.1339 35 1 0.9522 -2.5052 -1.0315 36 1 2.1030 1.8098 -1.5091 37 1 4.2835 0.5387 -3.9946 38 1 5.0077 1.7520 -5.9881 39 1 3.7198 7.1428 -5.7567 40 1 2.2004 4.8928 -5.0714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455698336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:01 Heat of formation + Delta-G solvation = -53.367651 kcal Electronic energy + Delta-G solvation = -26797.281015 eV Core-core repulsion = 22830.244583 eV Total energy + Delta-G solvation = -3967.036432 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.22332 -40.89997 -39.42188 -37.64288 -37.24368 -36.26766 -35.81544 -34.64465 -32.28922 -31.29228 -31.04473 -29.63486 -27.02554 -25.75186 -24.74603 -23.59621 -22.71995 -21.81496 -19.98065 -19.64301 -19.27920 -18.66824 -17.92309 -17.41558 -17.15651 -16.89351 -16.40777 -16.13019 -15.92993 -15.57826 -15.38308 -15.01021 -14.71761 -14.44501 -14.36864 -14.04739 -13.72388 -13.61279 -13.33204 -13.19459 -13.00325 -12.84354 -12.70994 -12.66426 -12.52873 -12.17402 -12.05583 -11.87513 -11.67655 -11.44942 -11.28939 -10.94924 -10.62536 -10.23255 -9.86433 -9.39157 -8.83125 -8.60203 -6.32675 0.66477 0.97628 1.31282 1.35351 1.42555 1.43823 1.47426 1.57031 2.02000 2.17344 2.23431 2.71023 2.72061 3.26902 3.59833 3.70156 3.81245 3.92203 4.16126 4.33400 4.38640 4.59373 4.65525 4.69519 4.76523 4.86802 4.91084 5.00728 5.10365 5.15547 5.26848 5.29900 5.45873 5.53863 5.73150 5.83823 5.88192 6.04526 6.12024 6.24925 6.53258 6.76837 6.87631 6.89958 7.01661 7.43952 8.34959 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.003012 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.413017 B = 9294.625425 C =10089.112114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.124 3.876 3 H 0.105 0.895 4 C 0.521 3.479 5 O -0.583 6.583 6 N -0.702 5.702 7 C 0.098 3.902 8 C 0.105 3.895 9 N -0.624 5.624 10 C 0.707 3.293 11 O -0.600 6.600 12 N -0.659 5.659 13 C 0.035 3.965 14 C -0.083 4.083 15 C -0.216 4.216 16 C 0.083 3.917 17 C -0.487 4.487 18 H 0.081 0.919 19 C 0.033 3.967 20 N -0.826 5.826 21 Si 0.985 3.015 22 H -0.258 1.258 23 H -0.266 1.266 24 H -0.268 1.268 25 C -0.155 4.155 26 C -0.028 4.028 27 Cl -0.090 7.090 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.410 0.590 32 H 0.068 0.932 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.404 0.596 37 H 0.133 0.867 38 H 0.108 0.892 39 H 0.289 0.711 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 -13.878 10.558 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.017 3.983 3 H 0.123 0.877 4 C 0.306 3.694 5 O -0.463 6.463 6 N -0.353 5.353 7 C -0.026 4.026 8 C -0.017 4.017 9 N -0.364 5.364 10 C 0.410 3.590 11 O -0.479 6.479 12 N -0.307 5.307 13 C -0.060 4.060 14 C -0.104 4.104 15 C -0.236 4.236 16 C 0.080 3.920 17 C -0.517 4.517 18 H 0.099 0.901 19 C -0.181 4.181 20 N -0.453 5.453 21 Si 0.806 3.194 22 H -0.181 1.181 23 H -0.190 1.190 24 H -0.192 1.192 25 C -0.176 4.176 26 C -0.056 4.056 27 Cl -0.061 7.061 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.247 0.753 32 H 0.087 0.913 33 H 0.153 0.847 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.242 0.758 37 H 0.150 0.850 38 H 0.126 0.874 39 H 0.099 0.901 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.234 -13.685 10.423 17.981 hybrid contribution 0.125 0.947 0.127 0.963 sum -5.109 -12.739 10.549 17.311 Atomic orbital electron populations 1.22041 0.90210 1.04527 1.04091 1.21408 0.98029 0.97005 0.81830 0.87708 1.20126 0.77123 0.82094 0.90009 1.90783 1.58663 1.65836 1.31011 1.45310 1.61023 1.17232 1.11738 1.21988 0.99912 0.97978 0.82765 1.22135 1.02098 0.76603 1.00843 1.47488 1.66418 1.07716 1.14747 1.15823 0.79108 0.81430 0.82652 1.90843 1.51458 1.68398 1.37206 1.42089 1.67279 1.04748 1.16625 1.16735 1.02195 0.93863 0.93218 1.20721 0.95119 0.99550 0.94965 1.21012 1.03989 0.98665 0.99909 1.17867 0.89556 0.91642 0.92925 1.19795 1.39077 0.92205 1.00596 0.90066 1.26737 0.91881 0.98548 1.00945 1.69850 1.36071 1.10015 1.29322 0.85104 0.78779 0.78056 0.77471 1.18125 1.19026 1.19248 1.20820 0.99801 1.01277 0.95670 1.20357 0.94756 0.95480 0.95052 1.98247 1.53833 1.86304 1.67759 0.89757 0.90870 0.89994 0.75278 0.91335 0.84720 0.87300 0.87917 0.75817 0.84985 0.87353 0.90055 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.39 71.98 0.68 -1.87 16 2 C 0.12 2.61 2.91 44.06 0.13 2.74 16 3 H 0.11 2.42 6.07 -2.39 -0.01 2.41 16 4 C 0.52 11.15 7.10 87.79 0.62 11.77 16 5 O -0.58 -16.69 17.80 -3.01 -0.05 -16.74 16 6 N -0.70 -9.99 5.42 -467.09 -2.53 -12.52 16 7 C 0.10 0.99 7.34 86.54 0.63 1.63 16 8 C 0.11 1.58 6.39 86.23 0.55 2.13 16 9 N -0.62 -14.26 2.63 -817.11 -2.15 -16.40 16 10 C 0.71 23.14 8.19 179.06 1.47 24.60 16 11 O -0.60 -23.34 12.89 -3.99 -0.05 -23.39 16 12 N -0.66 -23.16 5.00 -316.69 -1.58 -24.74 16 13 C 0.04 1.53 6.41 38.58 0.25 1.78 16 14 C -0.08 -3.85 8.67 22.13 0.19 -3.65 16 15 C -0.22 -10.61 9.74 22.49 0.22 -10.39 16 16 C 0.08 4.39 5.54 -21.28 -0.12 4.28 16 17 C -0.49 -25.46 9.04 23.39 0.21 -25.25 16 18 H 0.08 4.09 7.87 -2.91 -0.02 4.06 16 19 C 0.03 1.64 5.25 85.23 0.45 2.08 16 20 N -0.83 -42.03 10.87 21.82 0.24 -41.79 16 21 Si 0.98 37.35 29.57 68.60 2.03 39.38 16 22 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 23 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 24 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 25 C -0.16 -7.93 8.36 22.49 0.19 -7.74 16 26 C -0.03 -1.25 6.30 22.18 0.14 -1.11 16 27 Cl -0.09 -3.36 27.82 -2.72 -0.08 -3.43 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.10 7.51 -2.39 -0.02 1.09 16 31 H 0.41 4.57 8.80 -92.71 -0.82 3.76 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.13 0.29 8.14 -2.39 -0.02 0.28 16 34 H 0.11 1.90 7.08 -2.39 -0.02 1.88 16 35 H 0.10 1.06 7.52 -2.39 -0.02 1.04 16 36 H 0.40 12.54 5.56 -92.71 -0.52 12.02 16 37 H 0.13 5.97 5.75 -2.91 -0.02 5.95 16 38 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 39 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 40 H 0.12 6.40 6.26 -2.91 -0.02 6.38 16 Total: -1.00 -66.90 345.28 1.22 -65.67 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: -0.21 Total: 32.98 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 5.61 Total: 0.99 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -6.03 Total: -95.46 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -0.10 Total: -40.13 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Atomic # 17 Polarization: -3.36 SS G_CDS: -0.08 Total: -3.43 kcal Total: -66.90 1.22 -65.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455698336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.307 kcal (2) G-P(sol) polarization free energy of solvation -66.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds