Wall clock time and date at job start Tue Mar 31 2020 20:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46767 * 124.35332 * 2 1 4 4 C 1.54483 * 105.47166 * 197.03903 * 3 2 1 5 5 C 1.54625 * 101.76630 * 334.58463 * 4 3 2 6 6 H 1.09000 * 110.60087 * 143.53816 * 5 4 3 7 7 N 1.46507 * 110.48441 * 266.11984 * 5 4 3 8 8 C 1.34781 * 119.99740 * 201.22634 * 7 5 4 9 9 O 1.21575 * 120.00445 * 0.02562 * 8 7 5 10 10 N 1.34776 * 119.99673 * 179.97438 * 8 7 5 11 11 C 1.39271 * 120.00203 * 185.68430 * 10 8 7 12 12 C 1.39467 * 119.83666 * 24.90149 * 11 10 8 13 13 C 1.36374 * 120.18209 * 180.02562 * 12 11 10 14 14 C 1.40897 * 119.84709 * 359.97438 * 13 12 11 15 15 C 1.41148 * 120.15458 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00257 * 34.91336 * 15 14 13 17 17 C 1.39892 * 119.99769 * 214.90640 * 15 14 13 18 18 N 1.30884 * 119.99916 * 355.23281 * 17 15 14 19 19 Si 1.86799 * 120.00287 * 175.22983 * 17 15 14 20 20 H 1.48502 * 109.46727 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47052 * 120.00132 * 19 17 15 22 22 H 1.48495 * 109.47297 * 240.00372 * 19 17 15 23 23 C 1.40843 * 119.68002 * 359.97438 * 14 13 12 24 24 C 1.36471 * 119.81968 * 359.74419 * 23 14 13 25 25 Cl 1.73602 * 119.92610 * 180.25096 * 24 23 14 26 26 C 1.34421 * 124.34874 * 180.02562 * 2 1 3 27 27 O 1.21288 * 124.94260 * 359.60851 * 26 2 1 28 28 H 1.08999 * 109.47404 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46762 * 300.00168 * 1 2 3 30 30 H 1.09006 * 109.47217 * 59.99768 * 1 2 3 31 31 H 1.08997 * 110.24316 * 316.03503 * 3 2 1 32 32 H 1.08999 * 110.24467 * 78.03760 * 3 2 1 33 33 H 1.09003 * 110.96615 * 216.46386 * 4 3 2 34 34 H 1.08998 * 110.97270 * 92.70311 * 4 3 2 35 35 H 0.96995 * 119.99798 * 21.22765 * 7 5 4 36 36 H 0.97003 * 119.99760 * 5.41081 * 10 8 7 37 37 H 1.08005 * 119.91172 * 359.97438 * 12 11 10 38 38 H 1.07995 * 120.07949 * 179.97438 * 13 12 11 39 39 H 0.97005 * 120.00127 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.08391 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7486 -0.4363 5 6 3.6897 -0.7380 -0.0110 6 1 4.2328 -1.3476 -0.7332 7 7 4.2676 -0.8931 1.3263 8 6 4.7475 -2.0900 1.7183 9 8 4.7012 -3.0408 0.9621 10 7 5.2796 -2.2325 2.9484 11 6 5.8819 -3.4346 3.3115 12 6 6.4029 -4.2747 2.3277 13 6 6.9937 -5.4536 2.6754 14 6 7.0778 -5.8224 4.0327 15 6 7.6874 -7.0413 4.3998 16 1 8.5331 -7.4124 3.8398 17 6 7.1964 -7.7687 5.4891 18 7 6.2329 -7.2752 6.2247 19 14 7.9157 -9.4445 5.8940 20 1 8.9856 -9.7727 4.9178 21 1 8.4872 -9.4199 7.2643 22 1 6.8467 -10.4726 5.8218 23 6 6.5506 -4.9688 5.0212 24 6 5.9674 -3.7895 4.6587 25 17 5.3225 -2.7323 5.8754 26 6 2.2234 -1.1098 -0.0005 27 8 1.7945 -2.2443 0.0058 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8983 1.9384 -0.7099 32 1 2.3310 1.6427 1.0004 33 1 4.4755 1.3008 0.0960 34 1 3.8265 0.8449 -1.5147 35 1 4.3049 -0.1344 1.9294 36 1 5.2466 -1.4965 3.5793 37 1 6.3375 -3.9913 1.2876 38 1 7.3962 -6.1031 1.9122 39 1 5.8921 -7.7797 6.9799 40 1 6.6119 -5.2448 6.0636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455700328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:56 Heat of formation + Delta-G solvation = -57.469799 kcal Electronic energy + Delta-G solvation = -26241.552031 eV Core-core repulsion = 22274.337717 eV Total energy + Delta-G solvation = -3967.214314 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.03632 -41.02617 -39.33686 -37.65179 -37.24751 -36.27000 -35.68278 -34.76504 -32.49220 -31.29408 -30.65893 -28.27104 -27.56496 -26.58787 -23.84832 -22.99105 -22.64704 -21.92491 -20.65583 -19.71654 -19.20887 -18.61505 -17.61617 -17.55192 -17.12061 -16.85282 -16.32469 -15.96056 -15.82655 -15.56998 -15.03321 -14.77680 -14.72984 -14.63210 -14.34920 -14.13878 -13.84365 -13.54634 -13.45157 -13.22059 -13.18520 -12.81082 -12.69255 -12.40056 -12.31568 -12.28368 -11.95929 -11.78555 -11.59477 -11.53769 -11.33801 -11.01209 -10.76291 -10.08403 -9.73499 -9.39121 -8.73326 -8.52513 -6.35762 0.64873 0.96731 1.10403 1.37831 1.41354 1.46983 1.56698 1.86485 1.99584 2.19021 2.24667 2.75779 3.25493 3.36258 3.41108 3.55931 3.88819 4.17729 4.32721 4.35110 4.48900 4.61943 4.68463 4.74235 4.83765 4.89651 4.95594 5.00617 5.05492 5.19395 5.29593 5.34371 5.48536 5.53835 5.63631 5.86113 5.94953 6.03247 6.12870 6.25180 6.54263 6.88375 6.92314 6.99475 7.09794 7.53092 8.39975 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020420 B = 0.002697 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.856533 B =10381.155485 C =10762.947602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.619 5.619 3 C 0.096 3.904 4 C -0.121 4.121 5 C 0.131 3.869 6 H 0.099 0.901 7 N -0.709 5.709 8 C 0.693 3.307 9 O -0.605 6.605 10 N -0.655 5.655 11 C 0.052 3.948 12 C -0.096 4.096 13 C -0.205 4.205 14 C 0.073 3.927 15 C -0.488 4.488 16 H 0.081 0.919 17 C 0.027 3.973 18 N -0.839 5.839 19 Si 0.990 3.010 20 H -0.257 1.257 21 H -0.263 1.263 22 H -0.272 1.272 23 C -0.148 4.148 24 C -0.036 4.036 25 Cl -0.087 7.087 26 C 0.484 3.516 27 O -0.577 6.577 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.418 0.582 36 H 0.412 0.588 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.286 0.714 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.023 22.683 -8.118 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.354 5.354 3 C -0.025 4.025 4 C -0.159 4.159 5 C 0.022 3.978 6 H 0.117 0.883 7 N -0.368 5.368 8 C 0.394 3.606 9 O -0.484 6.484 10 N -0.303 5.303 11 C -0.044 4.044 12 C -0.116 4.116 13 C -0.226 4.226 14 C 0.070 3.930 15 C -0.519 4.519 16 H 0.099 0.901 17 C -0.186 4.186 18 N -0.466 5.466 19 Si 0.811 3.189 20 H -0.181 1.181 21 H -0.188 1.188 22 H -0.197 1.197 23 C -0.169 4.169 24 C -0.065 4.065 25 Cl -0.058 7.058 26 C 0.270 3.730 27 O -0.455 6.455 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.134 0.866 32 H 0.112 0.888 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.257 0.743 36 H 0.249 0.751 37 H 0.146 0.854 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.607 21.366 -8.515 23.930 hybrid contribution -0.211 -0.561 1.019 1.182 sum -6.818 20.805 -7.496 23.141 Atomic orbital electron populations 1.21712 0.77327 1.02644 1.03723 1.48401 1.07344 1.07662 1.71981 1.22511 0.89439 0.86142 1.04406 1.23036 0.98224 0.89390 1.05208 1.21535 0.89502 1.01615 0.85160 0.88299 1.44588 1.64806 1.10295 1.17123 1.16141 0.78311 0.83970 0.82185 1.90910 1.62834 1.39752 1.54872 1.41876 1.59363 1.14730 1.14286 1.16784 1.06295 0.90611 0.90685 1.20663 0.97692 0.94722 0.98555 1.21067 1.07149 0.98585 0.95752 1.17911 0.91665 0.92700 0.90723 1.19737 1.15041 1.04509 1.12575 0.90107 1.26783 0.94035 1.03833 0.93916 1.69824 1.22691 1.39186 1.14911 0.85021 0.78802 0.76052 0.78978 1.18052 1.18815 1.19673 1.21084 1.03472 0.91212 1.01087 1.20301 1.05232 0.93966 0.87027 1.98238 1.85792 1.65961 1.55820 1.22006 0.91278 0.84460 0.75277 1.90744 1.79501 1.24060 1.51180 0.93087 0.90045 0.89173 0.86601 0.88849 0.85053 0.86239 0.74322 0.75108 0.85438 0.87366 0.90358 0.85263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.24 11.14 127.77 1.42 2.66 16 2 N -0.62 -10.56 3.33 -842.88 -2.81 -13.37 16 3 C 0.10 0.56 7.35 86.83 0.64 1.20 16 4 C -0.12 -0.79 6.77 31.65 0.21 -0.57 16 5 C 0.13 2.80 3.23 44.98 0.15 2.94 16 6 H 0.10 2.60 7.66 -2.39 -0.02 2.58 16 7 N -0.71 -16.39 5.13 -457.85 -2.35 -18.74 16 8 C 0.69 25.02 8.35 179.05 1.49 26.51 16 9 O -0.61 -28.27 13.18 -3.95 -0.05 -28.32 16 10 N -0.65 -23.53 5.17 -316.70 -1.64 -25.17 16 11 C 0.05 2.36 6.44 38.58 0.25 2.61 16 12 C -0.10 -4.71 8.63 22.13 0.19 -4.52 16 13 C -0.21 -10.65 9.74 22.49 0.22 -10.44 16 14 C 0.07 4.02 5.55 -21.28 -0.12 3.90 16 15 C -0.49 -26.51 9.02 23.39 0.21 -26.30 16 16 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 17 C 0.03 1.37 5.42 85.23 0.46 1.83 16 18 N -0.84 -44.72 10.59 21.82 0.23 -44.49 16 19 Si 0.99 39.28 29.56 68.60 2.03 41.31 16 20 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 23 C -0.15 -7.84 8.38 22.49 0.19 -7.65 16 24 C -0.04 -1.70 6.30 22.18 0.14 -1.56 16 25 Cl -0.09 -3.28 27.74 -2.72 -0.08 -3.36 16 26 C 0.48 13.63 7.65 87.90 0.67 14.30 16 27 O -0.58 -24.25 17.35 -3.06 -0.05 -24.30 16 28 H 0.05 1.07 7.53 -2.39 -0.02 1.05 16 29 H 0.08 0.82 8.14 -2.38 -0.02 0.81 16 30 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.13 0.15 8.03 -2.39 -0.02 0.14 16 34 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.42 5.88 8.59 -92.71 -0.80 5.08 16 36 H 0.41 11.78 7.74 -92.71 -0.72 11.06 16 37 H 0.13 6.24 5.76 -2.91 -0.02 6.22 16 38 H 0.11 5.31 8.06 -2.91 -0.02 5.28 16 39 H 0.29 13.88 8.30 -92.70 -0.77 13.11 16 40 H 0.13 7.19 6.13 -2.91 -0.02 7.17 16 Total: -1.00 -82.77 353.73 1.02 -81.75 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.40 Total: 29.78 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 6.13 Total: 4.91 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -6.57 Total: -101.76 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -0.11 Total: -52.63 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Atomic # 17 Polarization: -3.28 SS G_CDS: -0.08 Total: -3.36 kcal Total: -82.77 1.02 -81.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455700328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.282 kcal (2) G-P(sol) polarization free energy of solvation -82.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds