Wall clock time and date at job start Tue Mar 31 2020 20:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46757 * 124.35079 * 2 1 4 4 C 1.54479 * 105.47505 * 197.01654 * 3 2 1 5 5 C 1.54625 * 101.76724 * 334.58572 * 4 3 2 6 6 H 1.08999 * 110.48324 * 265.98855 * 5 4 3 7 7 N 1.46501 * 110.48815 * 143.47317 * 5 4 3 8 8 C 1.34780 * 119.99848 * 155.00176 * 7 5 4 9 9 O 1.21575 * 120.00156 * 359.97438 * 8 7 5 10 10 N 1.34773 * 119.99843 * 179.97438 * 8 7 5 11 11 C 1.39272 * 120.00231 * 174.31306 * 10 8 7 12 12 C 1.39467 * 119.83893 * 335.10595 * 11 10 8 13 13 C 1.36371 * 120.18165 * 179.97438 * 12 11 10 14 14 C 1.40890 * 119.84870 * 359.97438 * 13 12 11 15 15 C 1.41158 * 120.15722 * 179.97438 * 14 13 12 16 16 H 1.07993 * 120.00198 * 34.91996 * 15 14 13 17 17 C 1.39886 * 119.99585 * 214.91935 * 15 14 13 18 18 N 1.30879 * 120.00596 * 355.22888 * 17 15 14 19 19 Si 1.86804 * 119.99602 * 175.23148 * 17 15 14 20 20 H 1.48495 * 109.47193 * 90.00280 * 19 17 15 21 21 H 1.48507 * 109.47165 * 209.99736 * 19 17 15 22 22 H 1.48499 * 109.47143 * 330.00028 * 19 17 15 23 23 C 1.40845 * 119.68315 * 0.02562 * 14 13 12 24 24 C 1.36474 * 119.81788 * 359.73498 * 23 14 13 25 25 Cl 1.73597 * 119.92879 * 180.25109 * 24 23 14 26 26 C 1.34421 * 124.34803 * 180.02562 * 2 1 3 27 27 O 1.21280 * 124.94351 * 359.63033 * 26 2 1 28 28 H 1.08993 * 109.47389 * 90.00097 * 1 2 3 29 29 H 1.09007 * 109.47163 * 209.99735 * 1 2 3 30 30 H 1.09002 * 109.47350 * 329.99571 * 1 2 3 31 31 H 1.08997 * 110.24687 * 78.01933 * 3 2 1 32 32 H 1.08998 * 110.24862 * 316.02218 * 3 2 1 33 33 H 1.09004 * 110.96576 * 92.70620 * 4 3 2 34 34 H 1.08999 * 110.97233 * 216.42650 * 4 3 2 35 35 H 0.96998 * 119.99981 * 335.00196 * 7 5 4 36 36 H 0.97007 * 120.00160 * 354.31919 * 10 8 7 37 37 H 1.08002 * 119.90714 * 359.97438 * 12 11 10 38 38 H 1.08002 * 120.07664 * 180.02562 * 13 12 11 39 39 H 0.96999 * 120.00639 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.08680 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2116 0.0000 4 6 3.7009 0.7486 -0.4357 5 6 3.6898 -0.7379 -0.0102 6 1 4.1215 -0.8533 0.9840 7 7 4.4193 -1.5552 -0.9828 8 6 4.9669 -2.7266 -0.6028 9 8 4.8557 -3.1049 0.5472 10 7 5.6376 -3.4787 -1.4977 11 6 6.3036 -4.6286 -1.0809 12 6 6.7285 -4.7433 0.2425 13 6 7.3809 -5.8663 0.6583 14 6 7.6252 -6.9131 -0.2525 15 6 8.3003 -8.0783 0.1707 16 1 8.1496 -8.4565 1.1710 17 6 9.1646 -8.7430 -0.7056 18 7 9.2762 -8.3402 -1.9459 19 14 10.1594 -10.2059 -0.1056 20 1 9.3833 -11.4536 -0.3197 21 1 11.4352 -10.2807 -0.8620 22 1 10.4507 -10.0462 1.3418 23 6 7.1934 -6.7910 -1.5876 24 6 6.5374 -5.6633 -1.9882 25 17 5.9983 -5.5125 -3.6314 26 6 2.2234 -1.1098 -0.0005 27 8 1.7945 -2.2443 0.0054 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 2.3306 1.6428 1.0003 32 1 1.8984 1.9383 -0.7101 33 1 3.8268 0.8448 -1.5142 34 1 4.4754 1.3014 0.0961 35 1 4.5083 -1.2532 -1.9003 36 1 5.6565 -3.2191 -2.4322 37 1 6.5404 -3.9404 0.9399 38 1 7.7088 -5.9535 1.6836 39 1 9.8758 -8.8010 -2.5534 40 1 7.3776 -7.5892 -2.2914 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455700330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:59 Heat of formation + Delta-G solvation = -57.555592 kcal Electronic energy + Delta-G solvation = -26120.318980 eV Core-core repulsion = 22153.100945 eV Total energy + Delta-G solvation = -3967.218035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.98411 -41.02382 -39.33428 -37.57384 -37.24475 -36.30371 -35.73703 -34.75962 -32.50046 -31.29151 -30.66974 -28.24615 -27.54523 -26.49541 -23.80373 -22.97503 -22.75726 -21.88988 -20.59151 -19.70804 -19.20051 -18.54867 -17.73298 -17.55303 -17.15681 -16.72085 -16.46028 -15.95704 -15.84036 -15.43563 -14.98968 -14.78780 -14.72262 -14.62895 -14.39209 -14.09087 -13.84479 -13.48286 -13.45056 -13.12788 -13.12297 -12.84454 -12.77106 -12.67867 -12.21829 -12.05559 -12.02999 -11.87127 -11.66127 -11.54249 -11.28474 -11.04701 -10.65834 -10.03226 -9.72939 -9.39413 -8.73482 -8.52344 -6.34697 0.65884 0.97330 1.21366 1.39093 1.42212 1.47464 1.56345 1.76730 2.02713 2.21039 2.25622 2.76465 3.19841 3.37874 3.49697 3.56990 3.97072 4.05903 4.31755 4.35814 4.45007 4.61543 4.68784 4.73154 4.85172 4.89609 4.98349 5.00829 5.06621 5.19866 5.30113 5.34982 5.48872 5.55497 5.63399 5.86615 5.95734 6.03604 6.12962 6.25023 6.54450 6.88562 6.92885 6.98968 7.11170 7.53564 8.40715 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.024051 B = 0.002559 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.898460 B =10940.867041 C =11427.170008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.622 5.622 3 C 0.101 3.899 4 C -0.120 4.120 5 C 0.129 3.871 6 H 0.111 0.889 7 N -0.712 5.712 8 C 0.699 3.301 9 O -0.609 6.609 10 N -0.657 5.657 11 C 0.052 3.948 12 C -0.095 4.095 13 C -0.206 4.206 14 C 0.074 3.926 15 C -0.491 4.491 16 H 0.078 0.922 17 C 0.029 3.971 18 N -0.836 5.836 19 Si 0.989 3.011 20 H -0.264 1.264 21 H -0.268 1.268 22 H -0.260 1.260 23 C -0.148 4.148 24 C -0.037 4.037 25 Cl -0.089 7.089 26 C 0.483 3.517 27 O -0.576 6.576 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.416 0.584 36 H 0.410 0.590 37 H 0.130 0.870 38 H 0.109 0.891 39 H 0.287 0.713 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 22.754 -2.086 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.356 5.356 3 C -0.020 4.020 4 C -0.158 4.158 5 C 0.020 3.980 6 H 0.129 0.871 7 N -0.370 5.370 8 C 0.400 3.600 9 O -0.488 6.488 10 N -0.305 5.305 11 C -0.044 4.044 12 C -0.116 4.116 13 C -0.226 4.226 14 C 0.070 3.930 15 C -0.521 4.521 16 H 0.096 0.904 17 C -0.183 4.183 18 N -0.464 5.464 19 Si 0.810 3.190 20 H -0.188 1.188 21 H -0.193 1.193 22 H -0.184 1.184 23 C -0.169 4.169 24 C -0.066 4.066 25 Cl -0.060 7.060 26 C 0.269 3.731 27 O -0.454 6.454 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.147 0.853 35 H 0.253 0.747 36 H 0.247 0.753 37 H 0.147 0.853 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.181 21.876 -1.426 24.171 hybrid contribution 0.255 -0.894 -0.777 1.212 sum -9.926 20.982 -2.203 23.315 Atomic orbital electron populations 1.21696 0.77145 1.03631 1.02603 1.48349 1.07365 1.07638 1.72278 1.22464 0.88810 0.86217 1.04523 1.23032 0.98506 0.89264 1.05003 1.21618 0.87715 0.92991 0.95690 0.87095 1.44627 1.57777 1.20021 1.14525 1.16050 0.78175 0.81159 0.84600 1.90855 1.65366 1.72651 1.19901 1.41899 1.52839 1.24466 1.11249 1.16810 1.05716 0.88023 0.93827 1.20663 0.97739 0.99033 0.94118 1.21083 1.06905 0.94483 1.00089 1.17903 0.90425 0.93319 0.91305 1.19689 1.23435 1.08783 1.00200 0.90384 1.26746 0.97331 1.00039 0.94213 1.69807 1.32555 1.38481 1.05510 0.85082 0.77491 0.77055 0.79331 1.18832 1.19254 1.18406 1.21093 1.00583 0.96912 0.98324 1.20373 1.05512 0.96144 0.84533 1.98239 1.89428 1.97824 1.20516 1.21974 0.91261 0.84528 0.75330 1.90736 1.79435 1.23916 1.51321 0.91741 0.93337 0.87357 0.88565 0.86612 0.87179 0.85305 0.74652 0.75299 0.85281 0.87267 0.90265 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 10.96 127.77 1.40 2.60 16 2 N -0.62 -10.17 3.33 -842.92 -2.81 -12.98 16 3 C 0.10 0.57 7.35 86.83 0.64 1.21 16 4 C -0.12 -0.81 6.87 31.65 0.22 -0.59 16 5 C 0.13 2.72 3.29 44.98 0.15 2.87 16 6 H 0.11 2.73 7.55 -2.39 -0.02 2.71 16 7 N -0.71 -17.54 5.13 -457.85 -2.35 -19.89 16 8 C 0.70 25.76 8.35 179.05 1.50 27.26 16 9 O -0.61 -28.01 13.12 -3.95 -0.05 -28.06 16 10 N -0.66 -24.50 5.17 -316.70 -1.64 -26.14 16 11 C 0.05 2.40 6.44 38.58 0.25 2.65 16 12 C -0.10 -4.69 8.63 22.13 0.19 -4.50 16 13 C -0.21 -10.67 9.74 22.48 0.22 -10.45 16 14 C 0.07 4.07 5.55 -21.28 -0.12 3.95 16 15 C -0.49 -26.76 9.02 23.39 0.21 -26.55 16 16 H 0.08 4.11 7.85 -2.91 -0.02 4.09 16 17 C 0.03 1.50 5.42 85.23 0.46 1.96 16 18 N -0.84 -43.81 10.59 21.82 0.23 -43.58 16 19 Si 0.99 38.93 29.56 68.60 2.03 40.96 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 21 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 23 C -0.15 -7.96 8.38 22.50 0.19 -7.77 16 24 C -0.04 -1.75 6.30 22.18 0.14 -1.61 16 25 Cl -0.09 -3.47 27.75 -2.72 -0.08 -3.55 16 26 C 0.48 13.16 7.66 87.90 0.67 13.83 16 27 O -0.58 -23.36 17.58 -3.03 -0.05 -23.41 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.91 7.92 -2.38 -0.02 0.89 16 30 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.11 0.36 7.82 -2.38 -0.02 0.34 16 34 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.42 6.94 8.45 -92.71 -0.78 6.16 16 36 H 0.41 12.59 7.75 -92.70 -0.72 11.87 16 37 H 0.13 6.28 5.76 -2.91 -0.02 6.26 16 38 H 0.11 5.34 8.06 -2.91 -0.02 5.31 16 39 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 40 H 0.13 7.24 6.13 -2.91 -0.02 7.22 16 Total: -1.00 -81.29 353.83 1.01 -80.27 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: -0.38 Total: 31.55 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 6.12 Total: 4.84 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -6.57 Total: -102.59 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.11 Total: -51.48 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Atomic # 17 Polarization: -3.47 SS G_CDS: -0.08 Total: -3.55 kcal Total: -81.29 1.01 -80.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455700330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.717 kcal (2) G-P(sol) polarization free energy of solvation -81.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds