Wall clock time and date at job start Tue Mar 31 2020 20:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46765 * 124.35007 * 2 1 4 4 C 1.54489 * 105.47187 * 197.03673 * 3 2 1 5 5 H 1.08998 * 111.00287 * 92.71642 * 4 3 2 6 6 N 1.46504 * 110.96673 * 216.46640 * 4 3 2 7 7 C 1.34773 * 119.99603 * 198.83160 * 6 4 3 8 8 O 1.21585 * 120.00364 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99922 * 179.97438 * 7 6 4 10 10 C 1.39273 * 119.99995 * 185.56209 * 9 7 6 11 11 C 1.39465 * 119.83938 * 21.69823 * 10 9 7 12 12 C 1.36376 * 120.17901 * 179.97438 * 11 10 9 13 13 C 1.40890 * 119.85168 * 359.97438 * 12 11 10 14 14 C 1.41149 * 120.16075 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99933 * 330.57752 * 14 13 12 16 16 C 1.39891 * 120.00363 * 150.56923 * 14 13 12 17 17 N 1.30882 * 120.00132 * 162.79433 * 16 14 13 18 18 Si 1.86797 * 119.99725 * 342.80035 * 16 14 13 19 19 H 1.48504 * 109.47474 * 90.70144 * 18 16 14 20 20 H 1.48497 * 109.47200 * 210.70358 * 18 16 14 21 21 H 1.48501 * 109.47433 * 330.70083 * 18 16 14 22 22 C 1.40842 * 119.68037 * 359.97438 * 13 12 11 23 23 C 1.36473 * 119.82155 * 0.02562 * 22 13 12 24 24 Cl 1.73593 * 119.92865 * 179.97438 * 23 22 13 25 25 C 1.54633 * 101.76434 * 334.58153 * 4 3 2 26 26 C 1.34418 * 124.35078 * 180.02562 * 2 1 3 27 27 O 1.21287 * 124.93951 * 359.60796 * 26 2 1 28 28 H 1.08991 * 109.47079 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47123 * 300.00276 * 1 2 3 30 30 H 1.09001 * 109.47133 * 60.00001 * 1 2 3 31 31 H 1.08999 * 110.24890 * 78.03937 * 3 2 1 32 32 H 1.08994 * 110.24958 * 316.03527 * 3 2 1 33 33 H 0.96994 * 120.00358 * 18.83306 * 6 4 3 34 34 H 0.97002 * 119.99883 * 5.56976 * 9 7 6 35 35 H 1.07996 * 119.91221 * 359.97438 * 11 10 9 36 36 H 1.08002 * 120.07506 * 179.72688 * 12 11 10 37 37 H 0.97001 * 119.99670 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.08832 * 180.02562 * 22 13 12 39 39 H 1.09000 * 110.48570 * 143.47518 * 25 4 3 40 40 H 1.08996 * 110.48605 * 266.12147 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7487 -0.4362 5 1 3.8272 0.8450 -1.5146 6 7 4.7419 1.4909 0.2792 7 6 5.9994 1.5237 -0.2048 8 8 6.2699 0.9370 -1.2348 9 7 6.9570 2.2069 0.4530 10 6 8.2264 2.3383 -0.1047 11 6 8.3996 2.1836 -1.4799 12 6 9.6395 2.3113 -2.0333 13 6 10.7474 2.6007 -1.2125 14 6 12.0337 2.7337 -1.7784 15 1 12.2891 2.1859 -2.6735 16 6 12.9776 3.5750 -1.1800 17 7 14.2456 3.4547 -1.4811 18 14 12.4282 4.8701 0.0490 19 1 12.4592 4.2973 1.4188 20 1 13.3431 6.0377 -0.0201 21 1 11.0456 5.3048 -0.2746 22 6 10.5654 2.7567 0.1753 23 6 9.3188 2.6261 0.7152 24 17 9.0913 2.8172 2.4255 25 6 3.6898 -0.7379 -0.0108 26 6 2.2234 -1.1098 -0.0005 27 8 1.7946 -2.2442 0.0058 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.3310 1.6427 1.0004 32 1 1.8983 1.9384 -0.7099 33 1 4.5263 1.9586 1.1010 34 1 6.7621 2.6071 1.3149 35 1 7.5496 1.9622 -2.1082 36 1 9.7724 2.1869 -3.0979 37 1 14.9001 4.0379 -1.0659 38 1 11.4100 2.9790 0.8106 39 1 4.2324 -1.3459 -0.7348 40 1 4.1197 -0.8532 0.9841 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455710942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:55 Heat of formation + Delta-G solvation = -55.394570 kcal Electronic energy + Delta-G solvation = -25900.801615 eV Core-core repulsion = 21933.677290 eV Total energy + Delta-G solvation = -3967.124326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.92692 -41.17484 -39.59037 -37.82104 -37.38491 -36.20141 -35.54679 -34.95863 -32.57739 -31.55007 -31.09064 -28.59490 -27.47110 -26.49547 -24.15867 -23.18322 -22.36580 -21.93935 -20.72738 -19.82458 -19.15982 -18.70675 -17.71669 -17.69723 -17.20507 -16.62339 -16.48434 -16.10044 -15.90969 -15.63171 -15.11843 -14.88806 -14.81241 -14.69590 -14.56503 -14.41742 -14.28660 -14.13353 -13.35243 -13.19724 -13.13801 -12.86372 -12.70059 -12.65905 -12.36473 -12.32156 -12.27122 -11.79072 -11.69196 -11.40955 -11.24023 -10.93036 -10.77397 -10.18194 -9.78940 -9.54960 -8.91402 -8.90885 -6.44431 0.49967 0.71383 1.21515 1.28061 1.37278 1.42628 1.49039 1.51252 2.00996 2.08798 2.12206 2.59122 3.10358 3.32798 3.41173 3.50914 3.80965 3.99520 4.12157 4.39244 4.44622 4.53446 4.58614 4.68584 4.74868 4.76012 4.79301 4.87008 4.90378 4.95636 5.17726 5.29365 5.42276 5.46170 5.51067 5.69536 5.85488 5.96690 6.02135 6.18932 6.27140 6.62968 6.76695 7.00977 7.04195 7.54302 8.16358 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.025743 B = 0.002511 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.417071 B =11150.199385 C =11678.347759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.618 5.618 3 C 0.107 3.893 4 C 0.161 3.839 5 H 0.103 0.897 6 N -0.713 5.713 7 C 0.702 3.298 8 O -0.607 6.607 9 N -0.657 5.657 10 C 0.057 3.943 11 C -0.081 4.081 12 C -0.195 4.195 13 C 0.073 3.927 14 C -0.472 4.472 15 H 0.063 0.937 16 C 0.049 3.951 17 N -0.843 5.843 18 Si 0.957 3.043 19 H -0.255 1.255 20 H -0.276 1.276 21 H -0.249 1.249 22 C -0.232 4.232 23 C -0.012 4.012 24 Cl -0.078 7.078 25 C -0.167 4.167 26 C 0.515 3.485 27 O -0.582 6.582 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.418 0.582 34 H 0.414 0.586 35 H 0.147 0.853 36 H 0.111 0.889 37 H 0.295 0.705 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.389 3.296 8.488 26.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.351 5.351 3 C -0.016 4.016 4 C 0.055 3.945 5 H 0.121 0.879 6 N -0.370 5.370 7 C 0.403 3.597 8 O -0.486 6.486 9 N -0.304 5.304 10 C -0.039 4.039 11 C -0.101 4.101 12 C -0.215 4.215 13 C 0.070 3.930 14 C -0.501 4.501 15 H 0.081 0.919 16 C -0.167 4.167 17 N -0.468 5.468 18 Si 0.780 3.220 19 H -0.180 1.180 20 H -0.203 1.203 21 H -0.173 1.173 22 C -0.253 4.253 23 C -0.042 4.042 24 Cl -0.049 7.049 25 C -0.209 4.209 26 C 0.303 3.697 27 O -0.462 6.462 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.256 0.744 34 H 0.252 0.748 35 H 0.164 0.836 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -24.277 2.288 7.708 25.574 hybrid contribution 0.517 0.446 1.011 1.221 sum -23.760 2.734 8.719 25.456 Atomic orbital electron populations 1.21779 0.76343 1.03399 1.03844 1.48271 1.07635 1.06820 1.72392 1.22433 0.87260 0.86812 1.05095 1.21513 0.86492 0.88504 0.98034 0.87925 1.44686 1.06003 1.56610 1.29741 1.15950 0.81300 0.79181 0.83265 1.90866 1.81257 1.50089 1.26426 1.41903 1.08655 1.55909 1.23926 1.16700 0.83086 1.12751 0.91364 1.20977 0.98119 0.98189 0.92815 1.21008 0.92036 1.09351 0.99086 1.17749 0.93267 0.91016 0.90969 1.19400 0.95247 1.24480 1.11004 0.91905 1.26816 0.93830 0.99058 0.96989 1.69731 1.02773 1.35212 1.39117 0.85640 0.79922 0.77548 0.78887 1.18029 1.20255 1.17257 1.20626 0.95366 1.14207 0.95057 1.20087 0.93600 1.07337 0.83133 1.98271 1.97168 1.96275 1.13221 1.22825 0.93443 0.99102 1.05537 1.21102 0.89878 0.84298 0.74409 1.90704 1.79390 1.23218 1.52890 0.91757 0.89527 0.89796 0.87358 0.86521 0.74376 0.74834 0.83622 0.87045 0.89436 0.86957 0.89023 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 11.14 127.77 1.42 2.18 16 2 N -0.62 -7.82 3.33 -842.90 -2.81 -10.63 16 3 C 0.11 0.67 7.07 86.84 0.61 1.28 16 4 C 0.16 2.16 3.43 46.05 0.16 2.32 16 5 H 0.10 1.72 7.72 -2.39 -0.02 1.70 16 6 N -0.71 -10.06 5.19 -452.74 -2.35 -12.41 16 7 C 0.70 18.02 8.38 179.06 1.50 19.52 16 8 O -0.61 -20.94 13.04 -3.98 -0.05 -20.99 16 9 N -0.66 -17.73 5.21 -316.69 -1.65 -19.38 16 10 C 0.06 2.11 6.49 38.58 0.25 2.36 16 11 C -0.08 -3.31 8.68 22.13 0.19 -3.12 16 12 C -0.19 -8.88 9.74 22.48 0.22 -8.66 16 13 C 0.07 3.64 5.13 -21.28 -0.11 3.53 16 14 C -0.47 -25.71 9.56 23.39 0.22 -25.49 16 15 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 16 C 0.05 2.53 5.42 85.23 0.46 2.99 16 17 N -0.84 -45.08 13.93 21.82 0.30 -44.78 16 18 Si 0.96 41.22 24.51 68.60 1.68 42.90 16 19 H -0.25 -10.46 6.48 99.48 0.64 -9.81 16 20 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.25 -10.79 7.00 99.48 0.70 -10.09 16 22 C -0.23 -10.58 6.95 22.49 0.16 -10.42 16 23 C -0.01 -0.48 6.30 22.18 0.14 -0.34 16 24 Cl -0.08 -2.41 27.70 -2.72 -0.08 -2.48 16 25 C -0.17 -3.04 6.59 30.59 0.20 -2.84 16 26 C 0.51 10.81 8.02 87.90 0.71 11.52 16 27 O -0.58 -17.79 17.35 -3.05 -0.05 -17.84 16 28 H 0.06 0.85 7.53 -2.39 -0.02 0.83 16 29 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.11 0.14 7.77 -2.39 -0.02 0.12 16 32 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.42 2.72 8.39 -92.71 -0.78 1.95 16 34 H 0.41 8.48 7.66 -92.71 -0.71 7.77 16 35 H 0.15 5.82 5.52 -2.91 -0.02 5.80 16 36 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 37 H 0.30 14.17 8.30 -92.71 -0.77 13.40 16 38 H 0.11 5.18 4.45 -2.91 -0.01 5.17 16 39 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.11 1.93 8.08 -2.39 -0.02 1.91 16 Total: -1.00 -71.61 347.84 0.70 -70.91 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.44 Total: 19.86 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 6.14 Total: -5.16 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -6.50 Total: -87.20 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.10 Total: -38.83 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.68 Total: 42.90 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.08 Total: -2.48 kcal Total: -71.61 0.70 -70.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455710942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.517 kcal (2) G-P(sol) polarization free energy of solvation -71.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds