Wall clock time and date at job start Tue Mar 31 2020 20:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46763 * 124.35130 * 2 1 4 4 C 1.54482 * 105.47416 * 197.03994 * 3 2 1 5 5 H 1.09002 * 110.99691 * 216.45425 * 4 3 2 6 6 N 1.46499 * 110.96853 * 92.70596 * 4 3 2 7 7 C 1.34770 * 119.99809 * 160.89493 * 6 4 3 8 8 O 1.21580 * 119.99965 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99801 * 180.02562 * 7 6 4 10 10 C 1.39276 * 119.99946 * 174.44427 * 9 7 6 11 11 C 1.39468 * 119.83851 * 338.70282 * 10 9 7 12 12 C 1.36378 * 120.17900 * 179.97438 * 11 10 9 13 13 C 1.40889 * 119.84761 * 359.97438 * 12 11 10 14 14 C 1.41153 * 120.15801 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00027 * 151.11587 * 14 13 12 16 16 C 1.39894 * 119.99916 * 331.12224 * 14 13 12 17 17 N 1.30887 * 119.99753 * 167.24129 * 16 14 13 18 18 Si 1.86797 * 120.00017 * 347.24064 * 16 14 13 19 19 H 1.48502 * 109.47047 * 95.27000 * 18 16 14 20 20 H 1.48499 * 109.47253 * 215.27043 * 18 16 14 21 21 H 1.48500 * 109.47047 * 335.27230 * 18 16 14 22 22 C 1.40844 * 119.68645 * 0.02562 * 13 12 11 23 23 C 1.36477 * 119.81543 * 359.73742 * 22 13 12 24 24 Cl 1.73600 * 119.92567 * 180.25418 * 23 22 13 25 25 C 1.54623 * 101.76347 * 334.58455 * 4 3 2 26 26 C 1.34419 * 124.35020 * 180.02562 * 2 1 3 27 27 O 1.21287 * 124.93940 * 359.60265 * 26 2 1 28 28 H 1.08999 * 109.47300 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47260 * 299.99363 * 1 2 3 30 30 H 1.08999 * 109.47151 * 59.99700 * 1 2 3 31 31 H 1.09000 * 110.24492 * 78.03858 * 3 2 1 32 32 H 1.08997 * 110.24380 * 316.04409 * 3 2 1 33 33 H 0.97003 * 119.99501 * 341.16449 * 6 4 3 34 34 H 0.96999 * 120.00311 * 354.44242 * 9 7 6 35 35 H 1.08000 * 119.90817 * 359.95336 * 11 10 9 36 36 H 1.08000 * 120.07228 * 180.02562 * 12 11 10 37 37 H 0.96998 * 119.99318 * 179.97438 * 17 16 14 38 38 H 1.07994 * 120.08965 * 180.02562 * 22 13 12 39 39 H 1.08996 * 110.48620 * 143.47912 * 25 4 3 40 40 H 1.09002 * 110.48980 * 265.98409 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7487 -0.4363 5 1 4.4758 1.3008 0.0955 6 7 3.8696 0.8783 -1.8858 7 6 5.1063 0.9021 -2.4207 8 8 6.0820 0.8166 -1.7004 9 7 5.2615 1.0218 -3.7542 10 6 6.5364 1.1628 -4.2970 11 6 7.5841 1.6202 -3.4980 12 6 8.8352 1.7604 -4.0223 13 6 9.0687 1.4415 -5.3746 14 6 10.3610 1.5847 -5.9241 15 1 10.6736 0.9513 -6.7411 16 6 11.2368 2.5469 -5.4102 17 7 12.5038 2.5198 -5.7376 18 14 10.5981 3.8703 -4.2569 19 1 10.8120 3.4460 -2.8500 20 1 11.3274 5.1394 -4.5075 21 1 9.1473 4.0775 -4.4964 22 6 8.0063 0.9802 -6.1759 23 6 6.7605 0.8402 -5.6364 24 17 5.4504 0.2655 -6.6197 25 6 3.6898 -0.7378 -0.0111 26 6 2.2235 -1.1098 -0.0005 27 8 1.7945 -2.2443 0.0059 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 2.3310 1.6427 1.0005 32 1 1.8982 1.9384 -0.7098 33 1 3.0912 0.9508 -2.4600 34 1 4.4854 1.0096 -4.3358 35 1 7.4039 1.8642 -2.4615 36 1 9.6454 2.1143 -3.4019 37 1 13.1110 3.1872 -5.3815 38 1 8.1780 0.7335 -7.2132 39 1 4.2324 -1.3457 -0.7350 40 1 4.1219 -0.8536 0.9829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455710945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:59 Heat of formation + Delta-G solvation = -55.114455 kcal Electronic energy + Delta-G solvation = -26130.158161 eV Core-core repulsion = 22163.045982 eV Total energy + Delta-G solvation = -3967.112179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.97840 -41.14608 -39.58136 -37.80430 -37.40386 -36.17525 -35.43201 -34.94471 -32.59319 -31.59241 -31.09739 -28.59025 -27.47411 -26.59420 -23.85017 -23.58968 -22.41253 -21.80568 -20.65146 -19.68775 -19.37359 -18.74925 -17.83736 -17.59396 -17.08430 -16.66470 -16.39330 -16.12070 -15.94567 -15.86473 -15.26508 -14.81560 -14.66347 -14.58281 -14.49889 -14.36277 -14.21909 -13.74743 -13.39804 -13.36046 -13.18855 -12.92717 -12.85158 -12.69268 -12.48954 -12.35459 -12.05507 -11.80765 -11.63001 -11.44356 -11.12130 -10.99810 -10.74545 -10.20011 -9.77626 -9.53631 -8.93336 -8.88651 -6.45823 0.50795 0.68376 1.23277 1.28931 1.40992 1.45851 1.50411 1.59847 1.99853 2.06899 2.12543 2.59076 3.16630 3.29823 3.39096 3.43935 3.77507 4.13533 4.21163 4.38724 4.39520 4.48594 4.61551 4.68111 4.73936 4.74692 4.79492 4.86499 4.90788 4.96155 5.13749 5.34842 5.38878 5.46008 5.50820 5.71565 5.84611 5.96404 5.99566 6.08170 6.29763 6.60612 6.75677 6.98421 7.06320 7.52038 8.17345 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.002884 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.327348 B = 9704.749502 C =10673.796149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.620 5.620 3 C 0.104 3.896 4 C 0.155 3.845 5 H 0.125 0.875 6 N -0.721 5.721 7 C 0.700 3.300 8 O -0.605 6.605 9 N -0.658 5.658 10 C 0.054 3.946 11 C -0.080 4.080 12 C -0.226 4.226 13 C 0.072 3.928 14 C -0.468 4.468 15 H 0.063 0.937 16 C 0.045 3.955 17 N -0.847 5.847 18 Si 0.965 3.035 19 H -0.262 1.262 20 H -0.279 1.279 21 H -0.244 1.244 22 C -0.192 4.192 23 C -0.013 4.013 24 Cl -0.075 7.075 25 C -0.167 4.167 26 C 0.511 3.489 27 O -0.586 6.586 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.411 0.589 34 H 0.413 0.587 35 H 0.145 0.855 36 H 0.102 0.898 37 H 0.295 0.705 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.398 3.724 10.979 26.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.353 5.353 3 C -0.018 4.018 4 C 0.049 3.951 5 H 0.142 0.858 6 N -0.378 5.378 7 C 0.401 3.599 8 O -0.484 6.484 9 N -0.306 5.306 10 C -0.042 4.042 11 C -0.100 4.100 12 C -0.246 4.246 13 C 0.069 3.931 14 C -0.497 4.497 15 H 0.081 0.919 16 C -0.170 4.170 17 N -0.473 5.473 18 Si 0.789 3.211 19 H -0.188 1.188 20 H -0.206 1.206 21 H -0.167 1.167 22 C -0.212 4.212 23 C -0.042 4.042 24 Cl -0.046 7.046 25 C -0.209 4.209 26 C 0.300 3.700 27 O -0.467 6.467 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.247 0.753 34 H 0.250 0.750 35 H 0.162 0.838 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.750 3.114 11.536 25.697 hybrid contribution -0.223 -0.065 -0.680 0.719 sum -22.973 3.049 10.856 25.591 Atomic orbital electron populations 1.21752 0.76602 1.03191 1.03775 1.48312 1.07500 1.07093 1.72410 1.22610 0.87144 0.86686 1.05332 1.21788 0.99161 0.94317 0.79790 0.85771 1.44974 1.05736 1.78832 1.08255 1.15990 0.84279 0.77811 0.81783 1.90850 1.38911 1.58011 1.60659 1.41948 1.07221 1.75324 1.06067 1.16696 0.85876 1.10594 0.91065 1.20900 0.91308 0.97523 1.00305 1.20822 0.97321 1.11398 0.95072 1.17742 0.92624 0.91409 0.91352 1.19415 0.96247 1.17361 1.16697 0.91904 1.26838 0.93955 1.00001 0.96169 1.69702 1.04618 1.33670 1.39288 0.85508 0.80528 0.76777 0.78291 1.18829 1.20618 1.16742 1.20593 0.90435 1.10535 0.99678 1.20102 0.89326 1.04267 0.90539 1.98278 1.48401 1.87693 1.70226 1.22834 0.93340 0.98913 1.05791 1.21213 0.90219 0.84242 0.74327 1.90701 1.79585 1.23347 1.53030 0.92062 0.89640 0.89807 0.86162 0.86698 0.75260 0.75005 0.83763 0.88038 0.89451 0.86299 0.89848 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 11.14 127.77 1.42 2.17 16 2 N -0.62 -7.52 3.33 -842.90 -2.81 -10.33 16 3 C 0.10 0.61 6.96 86.83 0.60 1.22 16 4 C 0.16 2.02 3.43 46.05 0.16 2.18 16 5 H 0.12 1.67 7.72 -2.39 -0.02 1.65 16 6 N -0.72 -11.88 5.16 -452.78 -2.34 -14.22 16 7 C 0.70 19.11 8.39 179.06 1.50 20.61 16 8 O -0.60 -21.31 13.01 -3.97 -0.05 -21.36 16 9 N -0.66 -18.86 5.21 -316.70 -1.65 -20.51 16 10 C 0.05 2.04 6.50 38.58 0.25 2.29 16 11 C -0.08 -3.42 8.68 22.13 0.19 -3.22 16 12 C -0.23 -10.69 6.83 22.48 0.15 -10.54 16 13 C 0.07 3.59 5.19 -21.28 -0.11 3.48 16 14 C -0.47 -25.55 9.60 23.39 0.22 -25.32 16 15 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 16 C 0.05 2.38 5.47 85.23 0.47 2.85 16 17 N -0.85 -45.70 13.93 21.82 0.30 -45.39 16 18 Si 0.96 42.02 24.36 68.60 1.67 43.69 16 19 H -0.26 -11.03 6.77 99.48 0.67 -10.35 16 20 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.24 -10.65 6.45 99.48 0.64 -10.01 16 22 C -0.19 -8.53 9.50 22.50 0.21 -8.32 16 23 C -0.01 -0.51 6.30 22.18 0.14 -0.37 16 24 Cl -0.07 -2.26 27.70 -2.72 -0.08 -2.33 16 25 C -0.17 -2.99 6.58 30.58 0.20 -2.79 16 26 C 0.51 10.66 8.02 87.90 0.71 11.37 16 27 O -0.59 -18.12 17.35 -3.05 -0.05 -18.17 16 28 H 0.06 0.82 7.53 -2.39 -0.02 0.81 16 29 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.11 0.19 8.03 -2.39 -0.02 0.17 16 33 H 0.41 4.51 8.59 -92.71 -0.80 3.71 16 34 H 0.41 9.30 7.65 -92.71 -0.71 8.59 16 35 H 0.15 6.03 5.50 -2.91 -0.02 6.01 16 36 H 0.10 4.81 4.19 -2.91 -0.01 4.80 16 37 H 0.29 14.31 8.30 -92.71 -0.77 13.54 16 38 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 39 H 0.08 1.97 8.09 -2.39 -0.02 1.95 16 40 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -72.02 347.27 0.64 -71.38 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -0.48 Total: 21.63 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 6.13 Total: -4.40 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -6.49 Total: -90.45 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.10 Total: -39.53 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.67 Total: 43.69 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.08 Total: -2.33 kcal Total: -72.02 0.64 -71.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455710945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.267 kcal (2) G-P(sol) polarization free energy of solvation -72.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds