Wall clock time and date at job start Tue Mar 31 2020 20:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34773 * 120.00363 * 2 1 4 4 O 1.21283 * 119.99941 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00312 * 179.97438 * 3 2 1 6 6 C 1.53496 * 114.20653 * 180.02562 * 5 3 2 7 7 N 1.47067 * 87.98461 * 220.14565 * 6 5 3 8 8 C 1.34781 * 136.06156 * 207.08403 * 7 6 5 9 9 O 1.21580 * 119.99720 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00198 * 179.97438 * 8 7 6 11 11 C 1.39274 * 119.99996 * 185.40756 * 10 8 7 12 12 C 1.39466 * 119.83721 * 20.68495 * 11 10 8 13 13 C 1.36371 * 120.17702 * 179.70261 * 12 11 10 14 14 C 1.40893 * 119.85434 * 0.27204 * 13 12 11 15 15 C 1.41151 * 120.16412 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00071 * 152.62627 * 15 14 13 17 17 C 1.39892 * 119.99799 * 332.63085 * 15 14 13 18 18 N 1.30878 * 120.00292 * 159.86818 * 17 15 14 19 19 Si 1.86799 * 119.99764 * 339.85952 * 17 15 14 20 20 H 1.48504 * 109.46742 * 95.20223 * 19 17 15 21 21 H 1.48502 * 109.47188 * 215.19766 * 19 17 15 22 22 H 1.48499 * 109.47354 * 335.20010 * 19 17 15 23 23 C 1.40841 * 119.67796 * 359.97438 * 14 13 12 24 24 C 1.36472 * 119.82414 * 0.02562 * 23 14 13 25 25 Cl 1.73601 * 119.93247 * 180.02562 * 24 23 14 26 26 C 1.47069 * 87.88362 * 27.34220 * 7 6 5 27 27 H 1.09004 * 109.46947 * 300.00593 * 1 2 3 28 28 H 1.09001 * 109.46892 * 59.99851 * 1 2 3 29 29 H 1.08999 * 109.47482 * 180.02562 * 1 2 3 30 30 H 0.96996 * 120.00173 * 179.97438 * 2 1 3 31 31 H 1.09001 * 113.27876 * 313.06036 * 5 3 2 32 32 H 1.08993 * 113.47356 * 105.36907 * 6 5 3 33 33 H 1.08998 * 113.52191 * 334.93250 * 6 5 3 34 34 H 0.97000 * 120.00240 * 5.41517 * 10 8 7 35 35 H 1.07999 * 119.90922 * 359.97360 * 12 11 10 36 36 H 1.08004 * 120.07672 * 180.29728 * 13 12 11 37 37 H 0.97000 * 120.00120 * 179.97438 * 18 17 15 38 38 H 1.08010 * 120.09117 * 179.97438 * 23 14 13 39 39 H 1.08994 * 113.46839 * 87.44190 * 26 7 6 40 40 H 1.09006 * 113.46582 * 217.87973 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.2753 2.5671 0.0011 7 7 5.2791 2.0595 -0.9462 8 6 6.5535 2.3616 -1.2644 9 8 7.1255 3.2670 -0.6887 10 7 7.1938 1.6603 -2.2206 11 6 8.5433 1.8962 -2.4715 12 6 9.3335 2.5076 -1.4984 13 6 10.6569 2.7364 -1.7345 14 6 11.2250 2.3589 -2.9673 15 6 12.5941 2.5931 -3.2187 16 1 13.1330 1.9588 -3.9070 17 6 13.2529 3.6468 -2.5763 18 7 14.5583 3.6426 -2.4829 19 14 12.2693 5.0602 -1.8521 20 1 12.0272 4.8063 -0.4091 21 1 13.0302 6.3255 -2.0112 22 1 10.9688 5.1722 -2.5601 23 6 10.4202 1.7466 -3.9476 24 6 9.0973 1.5238 -3.6975 25 17 8.1028 0.7688 -4.9036 26 6 4.2783 1.0812 -1.3982 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.9500 -0.8400 0.0004 31 1 4.0764 0.4836 0.7325 32 1 4.6946 2.8542 0.9654 33 1 3.6281 3.3352 -0.4224 34 1 6.7147 0.9912 -2.7342 35 1 8.8970 2.7966 -0.5538 36 1 11.2685 3.2056 -0.9779 37 1 15.0151 4.3734 -2.0378 38 1 10.8487 1.4549 -4.8952 39 1 3.6314 1.4568 -2.1909 40 1 4.7003 0.1023 -1.6260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455735197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:07 Heat of formation + Delta-G solvation = -22.309787 kcal Electronic energy + Delta-G solvation = -25822.948678 eV Core-core repulsion = 21857.259016 eV Total energy + Delta-G solvation = -3965.689662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.14585 -41.02910 -39.71738 -38.60433 -37.41462 -36.16321 -35.60766 -35.02452 -32.17805 -31.57295 -30.70314 -28.11883 -27.08936 -26.55530 -24.29811 -23.78613 -22.77030 -21.38051 -20.60757 -19.62851 -19.36630 -18.66942 -18.37513 -17.44248 -16.95253 -16.72612 -16.51191 -16.10812 -16.03431 -15.81004 -15.48239 -14.75644 -14.74499 -14.60704 -14.36913 -14.23499 -13.95835 -13.86647 -13.53336 -13.41199 -13.24614 -13.01963 -12.82587 -12.63213 -12.45466 -12.30230 -11.86986 -11.85119 -11.70766 -11.46402 -11.10463 -10.97308 -10.74124 -10.13028 -9.89872 -9.58575 -8.98514 -8.93967 -6.45657 0.48324 0.65705 1.17742 1.25239 1.29110 1.35877 1.45760 1.48010 1.95367 2.08734 2.30196 2.54246 2.78025 3.12245 3.38580 3.75009 3.89256 4.10175 4.14323 4.23676 4.39844 4.42739 4.52356 4.55862 4.62579 4.67465 4.74738 4.75508 4.96950 5.00495 5.01583 5.11161 5.35501 5.42744 5.43993 5.69830 5.82628 6.02723 6.11791 6.27909 6.53656 6.58676 6.74207 6.88039 7.22716 7.44131 8.09134 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.002672 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.849087 B =10477.698460 C =11581.131128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.716 5.716 3 C 0.528 3.472 4 O -0.579 6.579 5 C -0.128 4.128 6 C 0.138 3.862 7 N -0.668 5.668 8 C 0.727 3.273 9 O -0.614 6.614 10 N -0.651 5.651 11 C 0.045 3.955 12 C -0.083 4.083 13 C -0.233 4.233 14 C 0.074 3.926 15 C -0.466 4.466 16 H 0.071 0.929 17 C 0.058 3.942 18 N -0.831 5.831 19 Si 0.954 3.046 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.262 1.262 23 C -0.191 4.191 24 C -0.009 4.009 25 Cl -0.072 7.072 26 C 0.119 3.881 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.110 0.890 30 H 0.422 0.578 31 H 0.159 0.841 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.413 0.587 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.297 0.703 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.472 -11.479 3.851 28.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.367 5.367 3 C 0.314 3.686 4 O -0.459 6.459 5 C -0.150 4.150 6 C 0.014 3.986 7 N -0.407 5.407 8 C 0.431 3.569 9 O -0.495 6.495 10 N -0.297 5.297 11 C -0.051 4.051 12 C -0.103 4.103 13 C -0.252 4.252 14 C 0.070 3.930 15 C -0.494 4.494 16 H 0.089 0.911 17 C -0.159 4.159 18 N -0.456 5.456 19 Si 0.778 3.222 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.186 1.186 23 C -0.211 4.211 24 C -0.038 4.038 25 Cl -0.043 7.043 26 C -0.003 4.003 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.129 0.871 30 H 0.259 0.741 31 H 0.177 0.823 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.250 0.750 35 H 0.154 0.846 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.142 0.858 39 H 0.113 0.887 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -25.141 -10.061 4.157 27.397 hybrid contribution 0.173 0.165 -0.144 0.279 sum -24.968 -9.896 4.014 27.156 Atomic orbital electron populations 1.21691 0.78804 1.04292 1.01446 1.45714 1.08351 1.08641 1.74022 1.20278 0.89270 0.83835 0.75223 1.90740 1.70865 1.33149 1.51133 1.23082 0.91250 0.99717 1.00985 1.22773 0.85785 0.96415 0.93598 1.48571 1.08696 1.40153 1.43311 1.15286 0.80165 0.81005 0.80449 1.90832 1.66391 1.34506 1.57756 1.41781 1.08457 1.41431 1.38068 1.16706 0.83348 1.11172 0.93828 1.20903 0.92623 0.97828 0.98974 1.20876 0.95745 1.10751 0.97877 1.17744 0.92903 0.91467 0.90859 1.19395 0.93295 1.13381 1.23358 0.91051 1.26636 0.95509 1.00893 0.92838 1.69719 1.10300 1.32226 1.33345 0.85671 0.79359 0.77522 0.79598 1.18922 1.19891 1.18600 1.20614 0.91339 1.09237 0.99953 1.20090 0.92148 1.03124 0.88422 1.98270 1.69813 1.80666 1.55552 1.23147 0.87297 0.94634 0.95256 0.93232 0.93161 0.87118 0.74073 0.82349 0.90133 0.89577 0.74974 0.84610 0.88041 0.89256 0.85780 0.88659 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 10.70 127.77 1.37 1.86 16 2 N -0.72 -4.57 5.71 -484.53 -2.77 -7.34 16 3 C 0.53 7.16 7.40 87.66 0.65 7.81 16 4 O -0.58 -13.58 15.95 -3.04 -0.05 -13.63 16 5 C -0.13 -1.43 4.50 -11.12 -0.05 -1.48 16 6 C 0.14 2.77 7.96 83.18 0.66 3.43 16 7 N -0.67 -15.63 3.69 -876.04 -3.23 -18.86 16 8 C 0.73 24.64 8.62 179.06 1.54 26.18 16 9 O -0.61 -26.68 14.01 -3.97 -0.06 -26.74 16 10 N -0.65 -21.15 5.22 -316.70 -1.65 -22.80 16 11 C 0.05 1.84 6.51 38.58 0.25 2.09 16 12 C -0.08 -3.84 8.69 22.13 0.19 -3.64 16 13 C -0.23 -11.54 7.17 22.48 0.16 -11.38 16 14 C 0.07 3.75 5.15 -21.28 -0.11 3.64 16 15 C -0.47 -25.39 9.55 23.39 0.22 -25.17 16 16 H 0.07 4.08 8.06 -2.91 -0.02 4.05 16 17 C 0.06 3.10 5.39 85.24 0.46 3.56 16 18 N -0.83 -44.46 13.93 21.82 0.30 -44.16 16 19 Si 0.95 44.29 24.51 68.60 1.68 45.97 16 20 H -0.26 -11.92 6.65 99.48 0.66 -11.26 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 22 H -0.26 -12.87 6.91 99.48 0.69 -12.18 16 23 C -0.19 -8.60 9.50 22.49 0.21 -8.38 16 24 C -0.01 -0.35 6.30 22.18 0.14 -0.21 16 25 Cl -0.07 -2.18 27.69 -2.72 -0.08 -2.26 16 26 C 0.12 1.45 7.88 83.26 0.66 2.10 16 27 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.11 -0.08 8.14 -2.39 -0.02 -0.09 16 30 H 0.42 -0.24 8.83 -92.71 -0.82 -1.06 16 31 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 1.93 7.46 -2.39 -0.02 1.92 16 34 H 0.41 10.50 7.34 -92.71 -0.68 9.82 16 35 H 0.14 6.40 5.44 -2.91 -0.02 6.38 16 36 H 0.10 5.09 4.52 -2.91 -0.01 5.07 16 37 H 0.30 14.29 8.30 -92.71 -0.77 13.52 16 38 H 0.12 5.29 8.06 -2.91 -0.02 5.26 16 39 H 0.10 1.10 8.10 -2.39 -0.02 1.08 16 40 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -73.83 351.66 0.07 -73.76 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -0.44 Total: 15.65 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 6.36 Total: 0.41 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -7.35 Total: -93.16 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.10 Total: -40.37 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.68 Total: 45.97 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -0.08 Total: -2.26 kcal Total: -73.83 0.07 -73.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455735197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.449 kcal (2) G-P(sol) polarization free energy of solvation -73.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds