Wall clock time and date at job start Tue Mar 31 2020 20:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.17596 * 2 1 4 4 C 1.52990 * 109.21757 * 240.64469 * 2 1 3 5 5 N 1.47275 * 108.18788 * 286.39446 * 4 2 1 6 6 C 1.34774 * 121.35400 * 118.47258 * 5 4 2 7 7 O 1.21582 * 120.00148 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.39271 * 119.99953 * 175.21017 * 8 6 5 10 10 C 1.39469 * 119.83981 * 34.42039 * 9 8 6 11 11 C 1.36380 * 120.18125 * 179.76296 * 10 9 8 12 12 C 1.40887 * 119.84234 * 0.51128 * 11 10 9 13 13 C 1.41157 * 120.15210 * 179.76584 * 12 11 10 14 14 H 1.08004 * 119.99887 * 148.64634 * 13 12 11 15 15 C 1.39887 * 120.00273 * 328.63482 * 13 12 11 16 16 N 1.30880 * 120.00145 * 167.60362 * 15 13 12 17 17 Si 1.86803 * 120.00030 * 347.60990 * 15 13 12 18 18 H 1.48504 * 109.47150 * 92.54696 * 17 15 13 19 19 H 1.48495 * 109.47267 * 212.54969 * 17 15 13 20 20 H 1.48501 * 109.46963 * 332.54817 * 17 15 13 21 21 C 1.40834 * 119.69127 * 359.74662 * 12 11 10 22 22 C 1.36476 * 119.81658 * 359.97438 * 21 12 11 23 23 Cl 1.73606 * 119.92777 * 180.02562 * 22 21 12 24 24 C 1.47049 * 117.29050 * 298.49697 * 5 4 2 25 25 C 1.50432 * 108.89321 * 42.73357 * 24 5 4 26 26 O 1.21283 * 118.48935 * 167.26520 * 25 24 5 27 27 N 1.33381 * 123.02484 * 347.29797 * 25 24 5 28 28 H 1.09002 * 109.47371 * 300.63539 * 1 2 3 29 29 H 1.08996 * 109.47237 * 60.63870 * 1 2 3 30 30 H 1.09010 * 109.46986 * 180.63827 * 1 2 3 31 31 H 1.09001 * 109.72187 * 166.72145 * 4 2 1 32 32 H 1.08995 * 109.75621 * 46.08199 * 4 2 1 33 33 H 0.96996 * 120.00016 * 355.21066 * 8 6 5 34 34 H 1.08004 * 119.90540 * 0.02562 * 10 9 8 35 35 H 1.07997 * 120.07408 * 180.24142 * 11 10 9 36 36 H 0.97001 * 120.00106 * 180.02562 * 16 15 13 37 37 H 1.07996 * 120.09629 * 180.02562 * 21 12 11 38 38 H 1.09000 * 109.56492 * 282.91413 * 24 5 4 39 39 H 1.08998 * 109.66418 * 162.62171 * 24 5 4 40 40 H 0.97005 * 117.70808 * 184.03276 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8880 1.0295 0.0000 4 6 2.0336 -0.7082 -1.2591 5 7 1.8120 -2.1546 -1.0928 6 6 1.0072 -2.8414 -1.9277 7 8 0.4470 -2.2672 -2.8413 8 7 0.8234 -4.1647 -1.7498 9 6 -0.0842 -4.8554 -2.5491 10 6 -0.2582 -4.4835 -3.8820 11 6 -1.1415 -5.1581 -4.6723 12 6 -1.8875 -6.2264 -4.1365 13 6 -2.8072 -6.9259 -4.9473 14 1 -2.9946 -7.9746 -4.7700 15 6 -3.4761 -6.2607 -5.9802 16 7 -4.1367 -6.9450 -6.8793 17 14 -3.4263 -4.3958 -6.0765 18 1 -2.2973 -3.9749 -6.9447 19 1 -4.7027 -3.8954 -6.6469 20 1 -3.2391 -3.8347 -4.7144 21 6 -1.7110 -6.5933 -2.7883 22 6 -0.8193 -5.9129 -2.0109 23 17 -0.5989 -6.3632 -0.3489 24 6 2.5041 -2.8190 0.0217 25 6 2.4107 -1.9456 1.2430 26 8 2.7138 -2.4194 2.3175 27 7 2.0094 -0.6744 1.1987 28 1 -0.3634 0.5237 0.8842 29 1 -0.3633 0.5039 -0.8956 30 1 -0.3633 -1.0277 0.0114 31 1 3.0976 -0.5119 -1.3909 32 1 1.4830 -0.3495 -2.1287 33 1 1.3233 -4.6361 -1.0651 34 1 0.3114 -3.6618 -4.2906 35 1 -1.2720 -4.8711 -5.7053 36 1 -4.6002 -6.4837 -7.5958 37 1 -2.2791 -7.4115 -2.3709 38 1 3.5515 -2.9720 -0.2384 39 1 2.0338 -3.7812 0.2241 40 1 2.0350 -0.1643 2.0234 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455737685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:52 Heat of formation + Delta-G solvation = -33.245662 kcal Electronic energy + Delta-G solvation = -26978.306223 eV Core-core repulsion = 23012.142346 eV Total energy + Delta-G solvation = -3966.163877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.15287 -39.73274 -38.10808 -36.96913 -35.84312 -34.82214 -34.54682 -33.17059 -31.43571 -29.87183 -29.73661 -28.16596 -26.90547 -24.76820 -23.04314 -22.04621 -21.50184 -20.32659 -19.18871 -18.65431 -17.69976 -17.56587 -17.10567 -16.31126 -16.19590 -15.51586 -15.13821 -14.87875 -14.56029 -14.41510 -14.30098 -13.95904 -13.77294 -13.07343 -12.96869 -12.84668 -12.62612 -12.55064 -12.45267 -12.27018 -11.80327 -11.66818 -11.61967 -11.10037 -10.93495 -10.72892 -10.64141 -10.44986 -10.23696 -9.88091 -9.79007 -9.53159 -9.28908 -9.16494 -8.90313 -7.85335 -7.32303 -7.04836 -4.59449 2.16163 2.21810 2.36729 2.45965 2.84621 2.91052 3.06717 3.18089 3.27315 3.34908 3.88932 3.92056 4.07197 4.28491 4.34462 4.62150 4.67704 4.82161 4.99093 5.21104 5.26075 5.36977 5.47124 5.52678 5.84091 5.91206 5.99978 6.17551 6.35104 6.42699 6.48658 6.63629 6.70685 6.88800 6.91892 7.14000 7.24687 7.40894 7.67810 7.78190 7.80105 8.02344 8.19170 8.40858 8.62881 8.70726 9.96210 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.003642 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.292852 B = 7685.458980 C = 8812.382260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.122 3.878 3 H 0.098 0.902 4 C 0.119 3.881 5 N -0.636 5.636 6 C 0.708 3.292 7 O -0.567 6.567 8 N -0.662 5.662 9 C 0.016 3.984 10 C -0.051 4.051 11 C -0.226 4.226 12 C 0.095 3.905 13 C -0.433 4.433 14 H 0.095 0.905 15 C 0.082 3.918 16 N -0.804 5.804 17 Si 0.913 3.087 18 H -0.268 1.268 19 H -0.291 1.291 20 H -0.240 1.240 21 C -0.189 4.189 22 C 0.001 3.999 23 Cl -0.113 7.113 24 C 0.098 3.902 25 C 0.517 3.483 26 O -0.549 6.549 27 N -0.710 5.710 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.395 0.605 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.288 0.712 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.229 12.818 10.224 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.016 3.984 3 H 0.116 0.884 4 C -0.004 4.004 5 N -0.377 5.377 6 C 0.411 3.589 7 O -0.444 6.444 8 N -0.310 5.310 9 C -0.078 4.078 10 C -0.071 4.071 11 C -0.245 4.245 12 C 0.091 3.909 13 C -0.461 4.461 14 H 0.113 0.887 15 C -0.137 4.137 16 N -0.427 5.427 17 Si 0.739 3.261 18 H -0.194 1.194 19 H -0.218 1.218 20 H -0.164 1.164 21 C -0.209 4.209 22 C -0.027 4.027 23 Cl -0.084 7.084 24 C -0.029 4.029 25 C 0.302 3.698 26 O -0.426 6.426 27 N -0.362 5.362 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.135 0.865 33 H 0.231 0.769 34 H 0.143 0.857 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 10.791 12.731 9.808 19.358 hybrid contribution 0.147 0.650 0.670 0.945 sum 10.938 13.382 10.478 20.211 Atomic orbital electron populations 1.22234 0.94157 1.03387 1.02581 1.21436 0.95485 0.96659 0.84869 0.88390 1.21864 1.01698 0.78732 0.98136 1.47297 1.50409 1.08977 1.30986 1.15718 0.79436 0.81625 0.82170 1.90913 1.52014 1.68610 1.32819 1.42119 1.43761 1.06263 1.38850 1.16541 1.00805 0.99689 0.90756 1.20467 0.98062 0.98053 0.90519 1.20835 1.01980 1.02441 0.99266 1.17659 0.91651 0.90966 0.90620 1.19477 1.18549 0.98952 1.09151 0.88717 1.26190 0.92931 1.01859 0.92763 1.69663 1.24117 1.39289 1.09661 0.86299 0.76784 0.81621 0.81356 1.19409 1.21836 1.16353 1.20558 1.02431 1.04511 0.93449 1.20315 0.99845 0.99450 0.83136 1.98279 1.96679 1.92498 1.20973 1.21774 1.00291 0.96802 0.84009 1.20238 0.76284 0.82523 0.90717 1.90811 1.50061 1.72054 1.29654 1.45473 1.65514 1.12203 1.13002 0.92272 0.90746 0.91956 0.90441 0.86500 0.76851 0.85695 0.87349 0.90147 0.86521 0.87660 0.86930 0.76517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 9.37 37.16 0.35 -1.10 16 2 C 0.12 0.85 3.87 -68.39 -0.26 0.58 16 3 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 4 C 0.12 1.01 5.89 -3.62 -0.02 0.99 16 5 N -0.64 -7.20 2.75 -179.89 -0.49 -7.70 16 6 C 0.71 11.17 8.18 -86.92 -0.71 10.46 16 7 O -0.57 -10.82 13.17 5.29 0.07 -10.75 16 8 N -0.66 -10.84 4.91 -14.07 -0.07 -10.91 16 9 C 0.02 0.33 6.33 -83.52 -0.53 -0.20 16 10 C -0.05 -1.11 8.62 -39.79 -0.34 -1.45 16 11 C -0.23 -5.28 6.94 -39.25 -0.27 -5.55 16 12 C 0.09 2.30 5.13 -106.81 -0.55 1.75 16 13 C -0.43 -11.18 9.59 -37.86 -0.36 -11.54 16 14 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 15 C 0.08 2.08 5.46 -17.34 -0.09 1.99 16 16 N -0.80 -20.71 13.93 55.54 0.77 -19.94 16 17 Si 0.91 20.55 24.40 -169.99 -4.15 16.40 16 18 H -0.27 -5.86 6.66 56.52 0.38 -5.49 16 19 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.24 -5.67 6.69 56.52 0.38 -5.29 16 21 C -0.19 -4.20 9.50 -39.24 -0.37 -4.57 16 22 C 0.00 0.02 6.30 -39.72 -0.25 -0.23 16 23 Cl -0.11 -1.92 27.91 -51.86 -1.45 -3.36 16 24 C 0.10 0.96 6.40 -5.02 -0.03 0.93 16 25 C 0.52 5.62 7.84 -11.74 -0.09 5.53 16 26 O -0.55 -7.91 17.80 5.56 0.10 -7.81 16 27 N -0.71 -5.83 5.00 -54.79 -0.27 -6.10 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.76 7.99 -51.92 -0.42 0.34 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.12 1.12 6.98 -51.93 -0.36 0.76 16 33 H 0.40 5.52 5.73 -40.82 -0.23 5.29 16 34 H 0.13 2.68 6.14 -52.48 -0.32 2.36 16 35 H 0.11 2.54 4.43 -52.49 -0.23 2.31 16 36 H 0.29 6.73 8.30 -40.82 -0.34 6.39 16 37 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 38 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.11 1.15 6.01 -51.93 -0.31 0.84 16 40 H 0.40 2.79 8.80 -40.82 -0.36 2.43 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -30.33 340.94 -8.28 -38.61 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -4.38 Total: 8.86 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.55 Total: -2.43 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.06 Total: -44.65 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.17 Total: -18.56 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.15 Total: 16.40 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -1.45 Total: -3.36 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.33 -8.28 -38.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455737685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.364 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds