Wall clock time and date at job start Tue Mar 31 2020 20:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.17596 * 2 1 4 4 C 1.52990 * 109.21757 * 240.64469 * 2 1 3 5 5 N 1.47275 * 108.18788 * 286.39446 * 4 2 1 6 6 C 1.34774 * 121.35400 * 118.47258 * 5 4 2 7 7 O 1.21582 * 120.00148 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.39271 * 119.99953 * 175.21017 * 8 6 5 10 10 C 1.39469 * 119.83981 * 34.42039 * 9 8 6 11 11 C 1.36380 * 120.18125 * 179.76296 * 10 9 8 12 12 C 1.40887 * 119.84234 * 0.51128 * 11 10 9 13 13 C 1.41157 * 120.15210 * 179.76584 * 12 11 10 14 14 H 1.08004 * 119.99887 * 148.64634 * 13 12 11 15 15 C 1.39887 * 120.00273 * 328.63482 * 13 12 11 16 16 N 1.30880 * 120.00145 * 167.60362 * 15 13 12 17 17 Si 1.86803 * 120.00030 * 347.60990 * 15 13 12 18 18 H 1.48504 * 109.47150 * 92.54696 * 17 15 13 19 19 H 1.48495 * 109.47267 * 212.54969 * 17 15 13 20 20 H 1.48501 * 109.46963 * 332.54817 * 17 15 13 21 21 C 1.40834 * 119.69127 * 359.74662 * 12 11 10 22 22 C 1.36476 * 119.81658 * 359.97438 * 21 12 11 23 23 Cl 1.73606 * 119.92777 * 180.02562 * 22 21 12 24 24 C 1.47049 * 117.29050 * 298.49697 * 5 4 2 25 25 C 1.50432 * 108.89321 * 42.73357 * 24 5 4 26 26 O 1.21283 * 118.48935 * 167.26520 * 25 24 5 27 27 N 1.33381 * 123.02484 * 347.29797 * 25 24 5 28 28 H 1.09002 * 109.47371 * 300.63539 * 1 2 3 29 29 H 1.08996 * 109.47237 * 60.63870 * 1 2 3 30 30 H 1.09010 * 109.46986 * 180.63827 * 1 2 3 31 31 H 1.09001 * 109.72187 * 166.72145 * 4 2 1 32 32 H 1.08995 * 109.75621 * 46.08199 * 4 2 1 33 33 H 0.96996 * 120.00016 * 355.21066 * 8 6 5 34 34 H 1.08004 * 119.90540 * 0.02562 * 10 9 8 35 35 H 1.07997 * 120.07408 * 180.24142 * 11 10 9 36 36 H 0.97001 * 120.00106 * 180.02562 * 16 15 13 37 37 H 1.07996 * 120.09629 * 180.02562 * 21 12 11 38 38 H 1.09000 * 109.56492 * 282.91413 * 24 5 4 39 39 H 1.08998 * 109.66418 * 162.62171 * 24 5 4 40 40 H 0.97005 * 117.70808 * 184.03276 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8880 1.0295 0.0000 4 6 2.0336 -0.7082 -1.2591 5 7 1.8120 -2.1546 -1.0928 6 6 1.0072 -2.8414 -1.9277 7 8 0.4470 -2.2672 -2.8413 8 7 0.8234 -4.1647 -1.7498 9 6 -0.0842 -4.8554 -2.5491 10 6 -0.2582 -4.4835 -3.8820 11 6 -1.1415 -5.1581 -4.6723 12 6 -1.8875 -6.2264 -4.1365 13 6 -2.8072 -6.9259 -4.9473 14 1 -2.9946 -7.9746 -4.7700 15 6 -3.4761 -6.2607 -5.9802 16 7 -4.1367 -6.9450 -6.8793 17 14 -3.4263 -4.3958 -6.0765 18 1 -2.2973 -3.9749 -6.9447 19 1 -4.7027 -3.8954 -6.6469 20 1 -3.2391 -3.8347 -4.7144 21 6 -1.7110 -6.5933 -2.7883 22 6 -0.8193 -5.9129 -2.0109 23 17 -0.5989 -6.3632 -0.3489 24 6 2.5041 -2.8190 0.0217 25 6 2.4107 -1.9456 1.2430 26 8 2.7138 -2.4194 2.3175 27 7 2.0094 -0.6744 1.1987 28 1 -0.3634 0.5237 0.8842 29 1 -0.3633 0.5039 -0.8956 30 1 -0.3633 -1.0277 0.0114 31 1 3.0976 -0.5119 -1.3909 32 1 1.4830 -0.3495 -2.1287 33 1 1.3233 -4.6361 -1.0651 34 1 0.3114 -3.6618 -4.2906 35 1 -1.2720 -4.8711 -5.7053 36 1 -4.6002 -6.4837 -7.5958 37 1 -2.2791 -7.4115 -2.3709 38 1 3.5515 -2.9720 -0.2384 39 1 2.0338 -3.7812 0.2241 40 1 2.0350 -0.1643 2.0234 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455737685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:51 Heat of formation + Delta-G solvation = -53.981098 kcal Electronic energy + Delta-G solvation = -26979.205379 eV Core-core repulsion = 23012.142346 eV Total energy + Delta-G solvation = -3967.063033 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.17756 -40.92566 -39.61716 -37.95558 -37.42076 -36.21756 -35.73113 -34.83777 -32.23418 -31.62962 -31.39760 -28.98315 -27.99349 -26.30357 -23.85358 -23.76286 -23.02574 -21.64190 -19.97992 -19.94541 -19.47316 -18.77895 -18.03811 -17.45737 -17.14632 -17.11485 -16.34916 -16.13370 -15.97881 -15.87109 -15.30573 -15.07438 -14.85603 -14.70045 -14.48284 -14.31266 -14.15328 -13.69826 -13.49860 -13.36015 -13.04259 -12.86841 -12.64529 -12.50820 -12.39632 -12.36930 -12.17577 -11.84369 -11.70043 -11.58779 -11.25618 -11.02545 -10.79848 -10.27332 -9.86517 -9.58134 -9.00529 -8.92259 -6.50989 0.45828 0.64855 1.19717 1.26297 1.35299 1.38530 1.40204 1.48026 1.95803 2.09656 2.20672 2.53638 2.71105 3.31327 3.35251 3.62002 3.90196 3.98044 4.12238 4.22024 4.31195 4.36945 4.55304 4.70639 4.72413 4.74656 4.79754 4.84330 4.91166 5.09316 5.16200 5.26761 5.32638 5.40463 5.68193 5.70334 5.75106 5.82280 6.02833 6.17183 6.26937 6.57102 6.72635 6.73500 7.04102 7.41712 8.14901 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.003642 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.292852 B = 7685.458980 C = 8812.382260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.128 3.872 3 H 0.143 0.857 4 C 0.111 3.889 5 N -0.625 5.625 6 C 0.708 3.292 7 O -0.601 6.601 8 N -0.662 5.662 9 C 0.044 3.956 10 C -0.061 4.061 11 C -0.230 4.230 12 C 0.079 3.921 13 C -0.468 4.468 14 H 0.067 0.933 15 C 0.053 3.947 16 N -0.843 5.843 17 Si 0.960 3.040 18 H -0.258 1.258 19 H -0.277 1.277 20 H -0.258 1.258 21 C -0.192 4.192 22 C -0.007 4.007 23 Cl -0.077 7.077 24 C 0.096 3.904 25 C 0.517 3.483 26 O -0.588 6.588 27 N -0.698 5.698 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.024 0.976 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.409 0.591 34 H 0.131 0.869 35 H 0.106 0.894 36 H 0.296 0.704 37 H 0.121 0.879 38 H 0.136 0.864 39 H 0.109 0.891 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.471 15.485 12.028 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 H 0.160 0.840 4 C -0.011 4.011 5 N -0.364 5.364 6 C 0.410 3.590 7 O -0.480 6.480 8 N -0.311 5.311 9 C -0.051 4.051 10 C -0.081 4.081 11 C -0.250 4.250 12 C 0.076 3.924 13 C -0.497 4.497 14 H 0.086 0.914 15 C -0.163 4.163 16 N -0.469 5.469 17 Si 0.785 3.215 18 H -0.184 1.184 19 H -0.204 1.204 20 H -0.182 1.182 21 C -0.213 4.213 22 C -0.035 4.035 23 Cl -0.048 7.048 24 C -0.029 4.029 25 C 0.303 3.697 26 O -0.469 6.469 27 N -0.349 5.349 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.248 0.752 34 H 0.149 0.851 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.139 0.861 38 H 0.153 0.847 39 H 0.127 0.873 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 13.070 15.448 11.647 23.348 hybrid contribution -0.347 -0.067 0.398 0.533 sum 12.722 15.380 12.045 23.313 Atomic orbital electron populations 1.22224 0.95579 1.01067 1.03342 1.21562 0.94141 0.98446 0.83517 0.83969 1.22206 1.03646 0.76716 0.98547 1.47268 1.48922 1.10075 1.30140 1.15810 0.79617 0.81233 0.82303 1.90896 1.53432 1.69145 1.34486 1.42045 1.43390 1.06884 1.38776 1.16643 0.99521 0.98432 0.90519 1.20590 0.98047 0.98271 0.91232 1.20902 1.02241 1.02348 0.99479 1.17735 0.91740 0.91532 0.91390 1.19422 1.20875 0.98195 1.11237 0.91439 1.26687 0.92544 1.04624 0.92401 1.69682 1.25967 1.40518 1.10781 0.85583 0.77595 0.77996 0.80357 1.18366 1.20403 1.18241 1.20670 1.02845 1.04665 0.93090 1.20307 0.99155 0.99138 0.84940 1.98288 1.96465 1.92231 1.17824 1.21934 1.01712 0.96270 0.83020 1.20329 0.75969 0.83163 0.90244 1.90806 1.52201 1.72983 1.30898 1.45442 1.64047 1.11507 1.13918 0.90950 0.90658 0.95705 0.87227 0.87493 0.75241 0.85087 0.87664 0.89368 0.86139 0.84655 0.87318 0.75516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.37 71.98 0.67 -1.79 16 2 C 0.13 1.28 3.87 45.15 0.17 1.45 16 3 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 4 C 0.11 1.48 5.89 86.23 0.51 1.98 16 5 N -0.62 -12.29 2.75 -841.31 -2.31 -14.60 16 6 C 0.71 20.80 8.18 179.05 1.46 22.26 16 7 O -0.60 -21.98 13.17 -3.97 -0.05 -22.03 16 8 N -0.66 -20.22 4.91 -316.69 -1.55 -21.77 16 9 C 0.04 1.72 6.33 38.58 0.24 1.96 16 10 C -0.06 -2.62 8.62 22.13 0.19 -2.43 16 11 C -0.23 -10.83 6.94 22.48 0.16 -10.68 16 12 C 0.08 3.94 5.13 -21.28 -0.11 3.83 16 13 C -0.47 -25.34 9.59 23.39 0.22 -25.12 16 14 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 15 C 0.05 2.78 5.46 85.23 0.47 3.24 16 16 N -0.84 -45.16 13.93 21.82 0.30 -44.86 16 17 Si 0.96 43.07 24.40 68.60 1.67 44.74 16 18 H -0.26 -11.03 6.66 99.48 0.66 -10.36 16 19 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.26 -12.20 6.69 99.48 0.67 -11.53 16 21 C -0.19 -8.58 9.50 22.49 0.21 -8.37 16 22 C -0.01 -0.26 6.30 22.18 0.14 -0.12 16 23 Cl -0.08 -2.45 27.91 -2.72 -0.08 -2.53 16 24 C 0.10 1.58 6.40 85.44 0.55 2.13 16 25 C 0.52 9.74 7.84 87.79 0.69 10.43 16 26 O -0.59 -15.76 17.80 -3.04 -0.05 -15.81 16 27 N -0.70 -9.01 5.00 -446.41 -2.23 -11.24 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.02 0.55 7.99 -2.38 -0.02 0.53 16 31 H 0.11 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.11 1.75 6.98 -2.39 -0.02 1.73 16 33 H 0.41 10.31 5.73 -92.71 -0.53 9.78 16 34 H 0.13 5.49 6.14 -2.91 -0.02 5.48 16 35 H 0.11 4.97 4.43 -2.91 -0.01 4.95 16 36 H 0.30 14.25 8.30 -92.71 -0.77 13.48 16 37 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 38 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.11 1.90 6.01 -2.39 -0.01 1.89 16 40 H 0.41 4.27 8.80 -92.70 -0.82 3.45 16 Total: -1.00 -68.21 340.94 0.97 -67.24 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -0.31 Total: 22.07 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 5.58 Total: -1.21 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -5.80 Total: -92.47 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.11 Total: -37.84 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.67 Total: 44.74 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -0.08 Total: -2.53 kcal Total: -68.21 0.97 -67.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455737685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.255 kcal (2) G-P(sol) polarization free energy of solvation -68.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds