Wall clock time and date at job start Tue Mar 31 2020 20:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.21468 * 2 1 4 4 C 1.53466 * 109.10347 * 119.45689 * 2 1 3 5 5 N 1.47264 * 107.93802 * 167.14943 * 4 2 1 6 6 C 1.34776 * 121.35462 * 118.50906 * 5 4 2 7 7 O 1.21585 * 120.00175 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00241 * 179.71726 * 6 5 4 9 9 C 1.39281 * 120.00324 * 175.67601 * 8 6 5 10 10 C 1.39456 * 119.83667 * 34.75555 * 9 8 6 11 11 C 1.36380 * 120.18183 * 179.76316 * 10 9 8 12 12 C 1.40890 * 119.84293 * 0.51592 * 11 10 9 13 13 C 1.41150 * 120.15940 * 179.76487 * 12 11 10 14 14 H 1.07999 * 120.00192 * 34.75810 * 13 12 11 15 15 C 1.39890 * 120.00285 * 214.76053 * 13 12 11 16 16 N 1.30882 * 119.99617 * 355.57461 * 15 13 12 17 17 Si 1.86801 * 120.00159 * 175.58085 * 15 13 12 18 18 H 1.48494 * 109.47427 * 89.99714 * 17 15 13 19 19 H 1.48499 * 109.46849 * 209.99865 * 17 15 13 20 20 H 1.48505 * 109.46830 * 329.99568 * 17 15 13 21 21 C 1.40846 * 119.68515 * 359.73724 * 12 11 10 22 22 C 1.36472 * 119.81609 * 0.02562 * 21 12 11 23 23 Cl 1.73601 * 119.92509 * 180.02562 * 22 21 12 24 24 C 1.47048 * 117.29137 * 298.24107 * 5 4 2 25 25 C 1.50432 * 108.89199 * 42.98369 * 24 5 4 26 26 O 1.21287 * 118.48575 * 167.27035 * 25 24 5 27 27 N 1.33380 * 123.02390 * 347.29489 * 25 24 5 28 28 H 1.09001 * 109.47170 * 179.37658 * 1 2 3 29 29 H 1.08991 * 109.47133 * 299.37427 * 1 2 3 30 30 H 1.09000 * 109.46826 * 59.37777 * 1 2 3 31 31 H 1.09005 * 109.85373 * 47.55041 * 4 2 1 32 32 H 1.09004 * 109.83916 * 286.74293 * 4 2 1 33 33 H 0.97003 * 120.00151 * 355.67692 * 8 6 5 34 34 H 1.08002 * 119.91057 * 0.02562 * 10 9 8 35 35 H 1.07992 * 120.08006 * 180.27752 * 11 10 9 36 36 H 0.97006 * 119.99985 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.08928 * 179.97438 * 21 12 11 38 38 H 1.09006 * 109.56997 * 162.81376 * 24 5 4 39 39 H 1.09009 * 109.56640 * 283.16225 * 24 5 4 40 40 H 0.96997 * 117.70229 * 184.34024 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0292 0.0000 4 6 2.0322 -0.7131 1.2627 5 7 3.4714 -0.9754 1.0934 6 6 4.3845 -0.4421 1.9291 7 8 4.0261 0.2722 2.8453 8 7 5.6945 -0.7049 1.7523 9 6 6.6446 -0.0831 2.5589 10 6 6.3505 0.1870 3.8951 11 6 7.2774 0.7911 4.6925 12 6 8.5309 1.1526 4.1607 13 6 9.4933 1.7827 4.9787 14 1 9.5708 1.5183 6.0230 15 6 10.3467 2.7496 4.4369 16 7 10.3122 3.0081 3.1544 17 14 11.5357 3.6718 5.5439 18 1 12.8221 2.9332 5.6130 19 1 11.7736 5.0298 4.9923 20 1 10.9564 3.7855 6.9066 21 6 8.8195 0.8818 2.8090 22 6 7.8840 0.2722 2.0243 23 17 8.2369 -0.0635 0.3581 24 6 3.8713 -1.8476 -0.0209 25 6 3.0777 -1.4720 -1.2425 26 8 3.4257 -1.9142 -2.3169 27 7 2.0094 -0.6747 -1.1985 28 1 -0.3633 -1.0276 -0.0112 29 1 -0.3633 0.5040 0.8955 30 1 -0.3633 0.5235 -0.8844 31 1 1.4995 -1.6552 1.3924 32 1 1.8742 -0.0776 2.1341 33 1 5.9757 -1.3270 1.0632 34 1 5.3877 -0.0869 4.3006 35 1 7.0496 0.9954 5.7282 36 1 10.9037 3.6789 2.7787 37 1 9.7782 1.1564 2.3945 38 1 4.9347 -1.7183 -0.2223 39 1 3.6711 -2.8871 0.2391 40 1 1.5170 -0.5347 -2.0223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455737686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:55 Heat of formation + Delta-G solvation = -56.123255 kcal Electronic energy + Delta-G solvation = -26544.710128 eV Core-core repulsion = 22577.554204 eV Total energy + Delta-G solvation = -3967.155924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.11609 -40.87345 -39.43390 -37.92785 -37.24311 -36.19715 -35.83692 -34.61560 -32.28354 -31.29098 -30.84749 -29.03079 -27.88205 -26.28211 -23.65932 -23.48052 -22.74622 -21.74565 -20.26431 -19.78699 -19.27478 -18.67043 -17.81363 -17.43809 -17.09288 -16.97773 -16.43348 -16.27072 -15.94147 -15.72705 -15.32892 -14.88011 -14.71854 -14.44716 -14.13944 -14.07993 -13.67757 -13.45687 -13.43749 -13.17541 -13.05957 -12.80328 -12.66003 -12.54869 -12.44379 -12.29129 -11.97190 -11.80213 -11.61220 -11.54921 -11.26535 -10.99096 -10.74611 -10.28683 -9.85481 -9.38576 -8.79732 -8.53098 -6.37428 0.64412 0.97937 1.31100 1.36816 1.42211 1.42622 1.50235 1.56844 1.98888 2.19400 2.24575 2.72333 2.76594 3.27864 3.55055 3.62281 3.88514 4.02627 4.10955 4.27045 4.35422 4.49906 4.69221 4.74094 4.85901 4.90303 4.99609 5.03340 5.10541 5.24529 5.29511 5.32095 5.47780 5.53650 5.70895 5.83849 5.87341 6.07278 6.14388 6.24648 6.54238 6.75509 6.88470 6.91773 7.01277 7.43379 8.38759 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020300 B = 0.002953 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.950499 B = 9481.175171 C =10245.190306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.123 3.877 3 H 0.070 0.930 4 C 0.115 3.885 5 N -0.629 5.629 6 C 0.706 3.294 7 O -0.602 6.602 8 N -0.660 5.660 9 C 0.041 3.959 10 C -0.079 4.079 11 C -0.207 4.207 12 C 0.079 3.921 13 C -0.487 4.487 14 H 0.083 0.917 15 C 0.028 3.972 16 N -0.836 5.836 17 Si 0.989 3.011 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.258 1.258 21 C -0.153 4.153 22 C -0.031 4.031 23 Cl -0.092 7.092 24 C 0.097 3.903 25 C 0.516 3.484 26 O -0.588 6.588 27 N -0.699 5.699 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.406 0.594 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.286 0.714 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.028 -7.023 -5.651 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 H 0.088 0.912 4 C -0.007 4.007 5 N -0.368 5.368 6 C 0.409 3.591 7 O -0.481 6.481 8 N -0.309 5.309 9 C -0.054 4.054 10 C -0.099 4.099 11 C -0.227 4.227 12 C 0.076 3.924 13 C -0.517 4.517 14 H 0.101 0.899 15 C -0.185 4.185 16 N -0.464 5.464 17 Si 0.810 3.190 18 H -0.186 1.186 19 H -0.197 1.197 20 H -0.182 1.182 21 C -0.173 4.173 22 C -0.060 4.060 23 Cl -0.064 7.064 24 C -0.029 4.029 25 C 0.302 3.698 26 O -0.468 6.468 27 N -0.351 5.351 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.245 0.755 34 H 0.145 0.855 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.145 0.855 38 H 0.126 0.874 39 H 0.154 0.846 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -15.882 -6.644 -5.671 18.125 hybrid contribution 0.771 0.406 -0.574 1.043 sum -15.110 -6.238 -6.245 17.499 Atomic orbital electron populations 1.22074 0.90371 1.04170 1.04548 1.21567 0.97122 0.95960 0.83637 0.91195 1.22282 0.77231 1.02862 0.98368 1.47333 1.07085 1.52154 1.30227 1.15847 0.80919 0.80030 0.82334 1.90885 1.79624 1.43258 1.34347 1.42070 1.03644 1.46988 1.38188 1.16735 0.88965 1.09115 0.90557 1.20525 0.98963 0.99262 0.91146 1.21058 0.93730 1.07864 1.00093 1.17904 0.92232 0.90081 0.92180 1.19747 1.15107 1.19404 0.97481 0.89928 1.26774 0.97730 0.97255 0.96714 1.69822 1.34168 1.28681 1.13686 0.85083 0.77859 0.77360 0.78706 1.18606 1.19726 1.18208 1.21088 0.99506 1.01569 0.95172 1.20456 0.96111 1.04945 0.84463 1.98255 1.95139 1.94350 1.18635 1.21933 1.00400 0.97525 0.83023 1.20342 0.81051 0.78087 0.90306 1.90801 1.69117 1.56053 1.30854 1.45539 1.28656 1.47107 1.13777 0.90565 0.89259 0.90578 0.87474 0.87497 0.75527 0.85545 0.87040 0.90339 0.85520 0.87398 0.84584 0.75640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.33 71.98 0.67 -0.31 16 2 C 0.12 1.62 3.87 45.31 0.18 1.79 16 3 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.11 1.85 5.86 86.39 0.51 2.35 16 5 N -0.63 -14.26 2.97 -840.37 -2.50 -16.75 16 6 C 0.71 23.06 8.17 179.06 1.46 24.52 16 7 O -0.60 -23.84 13.20 -3.98 -0.05 -23.89 16 8 N -0.66 -22.67 4.90 -316.70 -1.55 -24.22 16 9 C 0.04 1.78 6.32 38.57 0.24 2.03 16 10 C -0.08 -3.56 8.61 22.13 0.19 -3.37 16 11 C -0.21 -10.03 9.74 22.49 0.22 -9.81 16 12 C 0.08 4.15 5.55 -21.28 -0.12 4.03 16 13 C -0.49 -25.40 9.02 23.39 0.21 -25.19 16 14 H 0.08 4.10 7.85 -2.91 -0.02 4.07 16 15 C 0.03 1.39 5.42 85.23 0.46 1.85 16 16 N -0.84 -43.27 10.59 21.82 0.23 -43.04 16 17 Si 0.99 37.82 29.56 68.60 2.03 39.85 16 18 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 19 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 21 C -0.15 -7.84 8.38 22.50 0.19 -7.65 16 22 C -0.03 -1.41 6.30 22.18 0.14 -1.27 16 23 Cl -0.09 -3.54 27.92 -2.72 -0.08 -3.62 16 24 C 0.10 1.87 6.40 85.44 0.55 2.41 16 25 C 0.52 11.13 7.84 87.79 0.69 11.82 16 26 O -0.59 -17.15 17.80 -3.05 -0.05 -17.21 16 27 N -0.70 -11.10 5.12 -445.65 -2.28 -13.38 16 28 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.11 1.14 8.09 -2.38 -0.02 1.12 16 32 H 0.11 2.01 7.06 -2.39 -0.02 1.99 16 33 H 0.41 11.91 5.73 -92.71 -0.53 11.38 16 34 H 0.13 5.54 6.17 -2.91 -0.02 5.52 16 35 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 36 H 0.29 13.54 8.30 -92.70 -0.77 12.77 16 37 H 0.13 6.90 6.13 -2.91 -0.02 6.88 16 38 H 0.11 2.24 6.01 -2.38 -0.01 2.23 16 39 H 0.14 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.41 5.45 8.61 -92.71 -0.80 4.65 16 Total: -1.00 -67.60 346.93 1.12 -66.48 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.21 Total: 32.57 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.59 Total: 3.22 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -6.10 Total: -97.40 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -0.11 Total: -41.09 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Atomic # 17 Polarization: -3.54 SS G_CDS: -0.08 Total: -3.62 kcal Total: -67.60 1.12 -66.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455737686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.354 kcal (2) G-P(sol) polarization free energy of solvation -67.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds