Wall clock time and date at job start Tue Mar 31 2020 20:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46603 * 2 1 4 4 C 1.46224 * 124.85224 * 270.32864 * 3 2 1 5 5 N 1.46799 * 108.05668 * 180.17535 * 4 3 2 6 6 C 1.34775 * 127.03254 * 179.84148 * 5 4 3 7 7 O 1.21581 * 120.00238 * 359.71232 * 6 5 4 8 8 N 1.34784 * 120.00101 * 179.71483 * 6 5 4 9 9 C 1.39268 * 120.00141 * 184.67393 * 8 6 5 10 10 C 1.39475 * 119.83939 * 329.01360 * 9 8 6 11 11 C 1.36372 * 120.18118 * 180.27788 * 10 9 8 12 12 C 1.40892 * 119.84760 * 359.74527 * 11 10 9 13 13 C 1.41150 * 120.15788 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00104 * 28.82937 * 13 12 11 15 15 C 1.39889 * 119.99951 * 208.83573 * 13 12 11 16 16 N 1.30877 * 120.00358 * 16.25163 * 15 13 12 17 17 Si 1.86804 * 119.99824 * 196.25878 * 15 13 12 18 18 H 1.48498 * 109.47336 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47371 * 119.99957 * 17 15 13 20 20 H 1.48507 * 109.46570 * 239.99659 * 17 15 13 21 21 C 1.40845 * 119.68483 * 0.02562 * 12 11 10 22 22 C 1.36472 * 119.81489 * 359.97438 * 21 12 11 23 23 Cl 1.73601 * 119.92331 * 179.97438 * 22 21 12 24 24 C 1.46989 * 105.93527 * 359.58307 * 5 4 3 25 25 C 1.34298 * 124.85727 * 90.03149 * 3 2 1 26 26 O 1.21280 * 125.42513 * 0.02562 * 25 3 2 27 27 H 1.09000 * 109.47690 * 60.00130 * 1 2 3 28 28 H 1.09006 * 109.46785 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47142 * 299.99825 * 1 2 3 30 30 H 1.08995 * 109.46826 * 240.00125 * 2 1 3 31 31 H 1.08993 * 109.47064 * 119.99913 * 2 1 3 32 32 H 1.08996 * 109.88793 * 60.44337 * 4 3 2 33 33 H 1.09004 * 109.62777 * 299.75642 * 4 3 2 34 34 H 0.96996 * 119.99842 * 4.66019 * 8 6 5 35 35 H 1.08003 * 119.90706 * 0.02913 * 10 9 8 36 36 H 1.08000 * 120.07406 * 179.72558 * 11 10 9 37 37 H 0.97002 * 120.00733 * 180.02562 * 16 15 13 38 38 H 1.07992 * 120.09062 * 180.02562 * 21 12 11 39 39 H 1.09002 * 110.03505 * 119.53890 * 24 5 4 40 40 H 1.09004 * 110.03556 * 240.98259 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2902 2.1714 -1.1999 5 7 2.7648 3.4942 -0.7758 6 6 3.1272 4.5201 -1.5713 7 8 3.0827 4.3972 -2.7800 8 7 3.5389 5.6822 -1.0268 9 6 3.8201 6.7736 -1.8450 10 6 4.3074 6.5662 -3.1353 11 6 4.5904 7.6299 -3.9405 12 6 4.3846 8.9412 -3.4681 13 6 4.6748 10.0469 -4.2961 14 1 4.6005 9.9521 -5.3693 15 6 5.0589 11.2654 -3.7265 16 7 5.4567 11.3089 -2.4804 17 14 5.0039 12.8308 -4.7445 18 1 4.5222 12.5145 -6.1132 19 1 4.0808 13.8038 -4.1069 20 1 6.3655 13.4183 -4.8228 21 6 3.8877 9.1435 -2.1659 22 6 3.6090 8.0694 -1.3715 23 17 2.9971 8.3156 0.2344 24 6 2.7581 3.4732 0.6939 25 6 2.2746 2.1047 1.1020 26 8 2.1392 1.7186 2.2437 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3787 2.2782 -1.7880 33 1 3.0577 1.6785 -1.7967 34 1 3.6391 5.7586 -0.0650 35 1 4.4647 5.5605 -3.4964 36 1 4.9718 7.4674 -4.9377 37 1 5.7227 12.1539 -2.0853 38 1 3.7271 10.1458 -1.7973 39 1 3.7655 3.6423 1.0744 40 1 2.0811 4.2377 1.0753 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455738177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:29 Heat of formation + Delta-G solvation = -39.301656 kcal Electronic energy + Delta-G solvation = -26091.063461 eV Core-core repulsion = 22124.636977 eV Total energy + Delta-G solvation = -3966.426485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.27285 -41.00871 -39.36294 -37.88467 -37.23724 -36.18107 -35.91284 -34.73489 -31.97992 -31.27634 -30.66184 -29.64319 -27.45758 -25.99286 -24.24400 -23.61018 -22.72339 -21.40473 -21.06138 -19.71504 -19.21351 -18.17908 -17.97195 -17.30818 -17.16440 -16.96485 -16.36082 -16.15628 -15.93439 -15.52115 -15.24774 -14.80285 -14.72274 -14.62625 -14.42970 -14.30223 -13.94777 -13.90609 -13.64711 -13.37748 -12.95749 -12.92423 -12.88955 -12.67975 -12.17366 -12.08417 -12.06107 -11.88399 -11.65277 -11.43847 -11.25580 -10.99278 -10.66481 -10.49096 -9.70130 -9.38850 -8.87549 -8.63922 -6.31176 0.65730 0.95981 1.06328 1.22637 1.40775 1.42789 1.47210 1.57239 1.81079 1.99597 2.23028 2.69521 2.75063 3.02040 3.60249 3.79610 4.09674 4.17079 4.22487 4.25436 4.34998 4.38486 4.46487 4.52643 4.73259 4.75123 4.90132 4.94947 5.00726 5.18366 5.23558 5.26776 5.29054 5.45555 5.61608 5.78675 5.85412 5.92415 6.03206 6.24834 6.52756 6.74381 6.81514 6.87188 6.89380 7.38723 8.32160 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.026505 B = 0.002566 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.155626 B =10909.295881 C =11661.481078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.123 3.877 3 N -0.618 5.618 4 C 0.355 3.645 5 N -0.642 5.642 6 C 0.736 3.264 7 O -0.596 6.596 8 N -0.651 5.651 9 C 0.031 3.969 10 C -0.077 4.077 11 C -0.218 4.218 12 C 0.087 3.913 13 C -0.488 4.488 14 H 0.082 0.918 15 C 0.038 3.962 16 N -0.820 5.820 17 Si 0.980 3.020 18 H -0.258 1.258 19 H -0.266 1.266 20 H -0.267 1.267 21 C -0.159 4.159 22 C -0.022 4.022 23 Cl -0.089 7.089 24 C 0.064 3.936 25 C 0.523 3.477 26 O -0.549 6.549 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.039 0.961 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.409 0.591 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.290 0.710 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 -15.721 5.122 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.004 3.996 3 N -0.353 5.353 4 C 0.146 3.854 5 N -0.383 5.383 6 C 0.438 3.562 7 O -0.474 6.474 8 N -0.298 5.298 9 C -0.064 4.064 10 C -0.097 4.097 11 C -0.238 4.238 12 C 0.084 3.916 13 C -0.517 4.517 14 H 0.100 0.900 15 C -0.178 4.178 16 N -0.445 5.445 17 Si 0.801 3.199 18 H -0.181 1.181 19 H -0.190 1.190 20 H -0.192 1.192 21 C -0.180 4.180 22 C -0.050 4.050 23 Cl -0.061 7.061 24 C -0.062 4.062 25 C 0.310 3.690 26 O -0.426 6.426 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.058 0.942 30 H 0.132 0.868 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.246 0.754 35 H 0.149 0.851 36 H 0.127 0.873 37 H 0.101 0.899 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.882 -15.907 5.119 17.715 hybrid contribution 0.091 0.999 0.413 1.085 sum -5.790 -14.908 5.532 16.923 Atomic orbital electron populations 1.22152 0.94884 1.03727 1.01790 1.21653 0.94928 0.77991 1.05050 1.48614 1.65209 1.15174 1.06253 1.21183 1.00683 0.78105 0.85393 1.46974 1.71117 1.13763 1.06454 1.14969 0.78049 0.79292 0.83847 1.90901 1.61837 1.81796 1.12878 1.41788 1.68676 1.09260 1.10055 1.16622 1.12680 0.83619 0.93436 1.20666 0.97320 0.99237 0.92475 1.20986 1.09614 0.92297 1.00952 1.17855 0.88845 0.93015 0.91908 1.19780 1.41545 0.95283 0.95055 0.89981 1.26713 0.91388 1.03502 0.96227 1.69857 1.30150 1.29546 1.14970 0.85176 0.78919 0.76529 0.79252 1.18123 1.19034 1.19164 1.20691 1.04988 0.96685 0.95647 1.20327 1.04914 0.93258 0.86535 1.98253 1.86715 1.97101 1.24026 1.22068 1.05757 0.97396 0.80980 1.20482 0.76572 0.87124 0.84800 1.90773 1.55094 1.75874 1.20904 0.91956 0.89013 0.94197 0.86826 0.89695 0.89418 0.88780 0.75416 0.85107 0.87329 0.89904 0.86850 0.85923 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 10.24 71.98 0.74 -1.06 16 2 C 0.12 1.38 6.70 86.38 0.58 1.96 16 3 N -0.62 -10.18 2.93 -834.42 -2.44 -12.62 16 4 C 0.35 6.26 7.57 170.95 1.29 7.56 16 5 N -0.64 -14.66 3.36 -854.30 -2.87 -17.53 16 6 C 0.74 23.27 8.39 179.05 1.50 24.77 16 7 O -0.60 -22.91 13.88 -3.97 -0.06 -22.97 16 8 N -0.65 -21.51 5.04 -316.68 -1.60 -23.10 16 9 C 0.03 1.31 6.39 38.58 0.25 1.56 16 10 C -0.08 -3.43 8.65 22.13 0.19 -3.24 16 11 C -0.22 -10.48 9.74 22.48 0.22 -10.27 16 12 C 0.09 4.49 5.53 -21.28 -0.12 4.38 16 13 C -0.49 -25.03 9.02 23.38 0.21 -24.82 16 14 H 0.08 4.07 7.90 -2.91 -0.02 4.04 16 15 C 0.04 1.81 5.13 85.23 0.44 2.24 16 16 N -0.82 -40.94 11.15 21.82 0.24 -40.70 16 17 Si 0.98 36.68 29.59 68.60 2.03 38.71 16 18 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 19 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 20 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 21 C -0.16 -7.96 8.37 22.50 0.19 -7.77 16 22 C -0.02 -0.95 6.30 22.18 0.14 -0.81 16 23 Cl -0.09 -3.22 27.85 -2.72 -0.08 -3.30 16 24 C 0.06 1.20 6.36 85.56 0.54 1.74 16 25 C 0.52 11.00 8.13 87.75 0.71 11.71 16 26 O -0.55 -15.10 17.67 -3.03 -0.05 -15.15 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 1.06 7.97 -2.39 -0.02 1.04 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.41 11.40 7.02 -92.71 -0.65 10.75 16 35 H 0.13 5.70 5.87 -2.91 -0.02 5.68 16 36 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 37 H 0.29 13.10 8.30 -92.71 -0.77 12.33 16 38 H 0.11 5.94 6.42 -2.91 -0.02 5.92 16 39 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -63.71 355.98 2.51 -61.21 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.44 Total: 27.47 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 6.89 Total: 7.98 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -6.67 Total: -93.95 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.11 Total: -38.11 kcal Atomic # 14 Polarization: 36.68 SS G_CDS: 2.03 Total: 38.71 kcal Atomic # 17 Polarization: -3.22 SS G_CDS: -0.08 Total: -3.30 kcal Total: -63.71 2.51 -61.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455738177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.906 kcal (2) G-P(sol) polarization free energy of solvation -63.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds