Wall clock time and date at job start Tue Mar 31 2020 20:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00407 * 2 1 4 4 C 1.52998 * 109.47357 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46810 * 65.00222 * 4 3 2 6 6 C 1.36932 * 120.00455 * 267.83668 * 5 4 3 7 7 H 1.08006 * 119.99449 * 8.59474 * 6 5 4 8 8 C 1.38801 * 120.00464 * 188.59856 * 6 5 4 9 9 N 1.31628 * 120.00259 * 25.77442 * 8 6 5 10 10 Si 1.86801 * 120.00248 * 205.77727 * 8 6 5 11 11 H 1.48496 * 109.46993 * 60.00054 * 10 8 6 12 12 H 1.48499 * 109.47281 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46915 * 299.99678 * 10 8 6 14 14 C 1.46505 * 119.99623 * 87.83138 * 5 4 3 15 15 C 1.50700 * 109.46985 * 90.00536 * 14 5 4 16 16 O 1.21292 * 120.00060 * 359.97438 * 15 14 5 17 17 N 1.34770 * 120.00296 * 179.97438 * 15 14 5 18 18 C 1.39545 * 120.00575 * 185.16881 * 17 15 14 19 19 C 1.39149 * 119.91501 * 212.90298 * 18 17 15 20 20 C 1.37659 * 120.11787 * 179.69700 * 19 18 17 21 21 C 1.39808 * 119.92447 * 0.60476 * 20 19 18 22 22 C 1.43198 * 120.08764 * 179.69618 * 21 20 19 23 23 N 9.74252 * 166.39495 * 254.43921 * 5 1 2 24 24 C 1.39882 * 119.82557 * 359.41588 * 21 20 19 25 25 Cl 1.73596 * 120.06348 * 180.30250 * 24 21 20 26 26 C 1.37886 * 119.88352 * 0.27851 * 24 21 20 27 27 H 1.08995 * 109.47089 * 59.99706 * 1 2 3 28 28 H 1.08999 * 109.47428 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46473 * 299.99770 * 1 2 3 30 30 H 1.08999 * 109.46835 * 60.00399 * 3 2 1 31 31 H 1.08996 * 109.47252 * 300.00408 * 3 2 1 32 32 H 1.08993 * 109.47693 * 305.00633 * 4 3 2 33 33 H 1.09001 * 109.47075 * 184.99724 * 4 3 2 34 34 H 0.96994 * 120.00481 * 180.02562 * 9 8 6 35 35 H 1.08994 * 109.47638 * 330.00343 * 14 5 4 36 36 H 1.09000 * 109.46830 * 209.99878 * 14 5 4 37 37 H 0.96998 * 120.00110 * 5.17780 * 17 15 14 38 38 H 1.08000 * 119.94606 * 0.02562 * 19 18 17 39 39 H 1.07993 * 120.04047 * 180.31790 * 20 19 18 40 40 H 1.08000 * 119.96316 * 179.97438 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2510 6 6 4.1404 -0.7938 -1.3215 7 1 3.8140 -1.4202 -0.5044 8 6 4.7258 -1.3650 -2.4429 9 7 5.5581 -0.6617 -3.1813 10 14 4.3326 -3.1319 -2.9044 11 1 2.8748 -3.2657 -3.1533 12 1 5.0800 -3.5006 -4.1335 13 1 4.7301 -4.0337 -1.7936 14 6 4.2426 1.3958 -2.4272 15 6 5.6877 1.8232 -2.4238 16 8 6.4230 1.4682 -1.5270 17 7 6.1630 2.5999 -3.4174 18 6 7.5232 2.9067 -3.4734 19 6 7.9369 4.1375 -3.9735 20 6 9.2773 4.4471 -4.0248 21 6 10.2250 3.5179 -3.5853 22 6 11.6205 3.8337 -3.6432 23 7 12.7274 4.0846 -3.6894 24 6 9.8061 2.2812 -3.0834 25 17 10.9771 1.1260 -2.5287 26 6 8.4612 1.9815 -3.0296 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.6888 1.8463 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.8509 0.5683 0.8425 33 1 3.9785 2.1764 0.0902 34 1 5.9669 -1.0607 -3.9652 35 1 3.6028 2.2778 -2.4006 36 1 4.0351 0.8235 -3.3314 37 1 5.5597 2.9457 -4.0936 38 1 7.2049 4.8534 -4.3171 39 1 9.5967 5.4047 -4.4085 40 1 8.1364 1.0270 -2.6427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459532334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:34 Heat of formation + Delta-G solvation = -10.351223 kcal Electronic energy + Delta-G solvation = -26450.234797 eV Core-core repulsion = 22485.063697 eV Total energy + Delta-G solvation = -3965.171100 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29117 -39.70838 -38.70445 -37.64917 -37.54346 -36.72048 -35.24754 -33.40865 -31.91571 -31.43839 -30.24443 -28.44921 -27.06796 -25.29706 -24.40902 -23.93135 -22.31444 -21.10804 -20.05014 -19.12788 -18.29961 -17.70700 -17.25634 -17.00456 -16.46255 -16.28226 -15.89566 -15.72010 -15.60551 -15.34307 -15.18676 -14.98898 -14.69013 -14.43184 -14.31852 -13.90154 -13.81600 -13.47882 -13.39077 -13.20083 -12.84229 -12.75345 -12.62330 -12.52318 -12.42221 -12.14545 -12.10661 -11.97544 -11.84533 -11.63795 -11.07279 -10.67846 -10.32859 -10.21957 -9.83739 -9.00316 -8.79318 -7.81844 -5.01782 -0.35668 0.25686 0.96501 1.50598 1.53876 1.57924 1.59769 1.79584 2.33134 2.48711 2.66610 2.85545 2.86962 3.17963 3.37237 3.69425 3.82145 4.15568 4.24880 4.34313 4.41633 4.51193 4.54028 4.63986 4.69576 4.71661 4.80845 4.84080 4.95231 4.95875 5.03998 5.17377 5.26580 5.36141 5.40083 5.47955 5.81681 6.03284 6.32715 6.40598 6.60638 6.86028 7.24666 7.80837 7.98887 8.31843 9.26022 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.003274 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.268283 B = 8549.446405 C = 9563.931255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.053 3.947 4 C 0.146 3.854 5 N -0.579 5.579 6 C -0.226 4.226 7 H 0.060 0.940 8 C -0.042 4.042 9 N -0.913 5.913 10 Si 0.946 3.054 11 H -0.284 1.284 12 H -0.299 1.299 13 H -0.296 1.296 14 C 0.164 3.836 15 C 0.526 3.474 16 O -0.548 6.548 17 N -0.671 5.671 18 C 0.209 3.791 19 C -0.139 4.139 20 C -0.016 4.016 21 C -0.071 4.071 22 C 0.281 3.719 23 N -0.453 5.453 24 C 0.019 3.981 25 Cl -0.075 7.075 26 C -0.140 4.140 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.245 0.755 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.424 0.576 38 H 0.186 0.814 39 H 0.184 0.816 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.862 14.125 -3.447 15.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.026 4.026 4 C 0.020 3.980 5 N -0.298 5.298 6 C -0.356 4.356 7 H 0.078 0.922 8 C -0.237 4.237 9 N -0.561 5.561 10 Si 0.777 3.223 11 H -0.211 1.211 12 H -0.225 1.225 13 H -0.224 1.224 14 C 0.034 3.966 15 C 0.315 3.685 16 O -0.423 6.423 17 N -0.318 5.318 18 C 0.110 3.890 19 C -0.159 4.159 20 C -0.036 4.036 21 C -0.077 4.077 22 C -0.033 4.033 23 N -0.129 5.129 24 C -0.011 4.011 25 Cl -0.046 7.046 26 C -0.161 4.161 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.263 0.737 38 H 0.203 0.797 39 H 0.201 0.799 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.476 13.826 -2.880 14.339 hybrid contribution -0.475 -1.799 -0.274 1.880 sum -2.951 12.028 -3.155 12.780 Atomic orbital electron populations 1.22808 0.81009 1.02724 1.00278 1.88049 1.20148 1.28998 1.95333 1.23230 0.95245 0.84246 0.99839 1.20961 0.91782 0.97098 0.88185 1.43964 1.75162 1.02984 1.07676 1.19209 1.31364 0.83012 1.02019 0.92182 1.24988 0.98494 0.99951 1.00251 1.69921 1.29546 1.37374 1.19248 0.85657 0.77546 0.82587 0.76483 1.21087 1.22509 1.22369 1.20774 0.89008 0.94206 0.92645 1.22662 0.93245 0.73373 0.79264 1.90550 1.60266 1.52686 1.38749 1.43895 1.05808 1.52016 1.30049 1.18185 0.84627 0.92382 0.93833 1.21299 0.96952 0.94179 1.03503 1.21296 0.90491 0.98337 0.93520 1.15839 0.85711 0.95106 1.11010 1.25518 0.92460 0.92760 0.92609 1.81199 1.12098 1.09176 1.10449 1.20766 0.90007 0.90375 0.99939 1.98377 1.58166 1.59977 1.88094 1.20972 0.90181 1.01258 1.03734 0.93880 0.90081 0.93038 0.91975 0.93178 0.94585 0.91215 0.94556 0.89915 0.89201 0.73687 0.79662 0.79854 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.41 -14.49 10.28 -148.98 -1.53 -16.02 16 3 C 0.05 1.62 6.28 71.98 0.45 2.07 16 4 C 0.15 5.46 6.08 86.38 0.53 5.99 16 5 N -0.58 -25.90 1.99 -706.35 -1.40 -27.31 16 6 C -0.23 -11.87 9.29 84.03 0.78 -11.09 16 7 H 0.06 3.34 7.95 -2.91 -0.02 3.31 16 8 C -0.04 -2.23 4.87 84.86 0.41 -1.82 16 9 N -0.91 -47.77 9.00 21.65 0.19 -47.58 16 10 Si 0.95 44.74 29.63 68.60 2.03 46.78 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 13 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 14 C 0.16 6.31 5.44 85.63 0.47 6.77 16 15 C 0.53 20.56 5.62 87.66 0.49 21.05 16 16 O -0.55 -26.86 13.77 -3.07 -0.04 -26.91 16 17 N -0.67 -19.09 5.32 -303.47 -1.62 -20.71 16 18 C 0.21 5.79 6.29 38.32 0.24 6.04 16 19 C -0.14 -2.34 9.94 22.35 0.22 -2.12 16 20 C -0.02 -0.26 9.75 22.51 0.22 -0.04 16 21 C -0.07 -1.76 5.74 -21.26 -0.12 -1.88 16 22 C 0.28 7.58 14.38 88.33 1.27 8.85 16 23 N -0.45 -13.75 18.54 19.00 0.35 -13.40 16 24 C 0.02 0.60 6.34 22.58 0.14 0.74 16 25 Cl -0.08 -2.52 28.02 -2.72 -0.08 -2.59 16 26 C -0.14 -4.92 8.41 22.38 0.19 -4.74 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.49 8.02 -2.39 -0.02 1.47 16 33 H 0.07 2.34 8.09 -2.39 -0.02 2.32 16 34 H 0.24 12.95 8.31 -92.71 -0.77 12.18 16 35 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 36 H 0.09 3.83 6.33 -2.39 -0.02 3.81 16 37 H 0.42 8.33 8.81 -92.71 -0.82 7.51 16 38 H 0.19 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.12 5.59 6.36 -2.91 -0.02 5.57 16 Total: -1.00 -72.04 366.08 4.72 -67.32 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.27 Total: 8.64 kcal Atomic # 6 Polarization: 25.24 SS G_CDS: 6.54 Total: 31.78 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -2.47 Total: -108.99 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -1.57 Total: -42.93 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -0.08 Total: -2.59 kcal Total: -72.04 4.72 -67.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459532334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.965 kcal (2) G-P(sol) polarization free energy of solvation -72.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds