Wall clock time and date at job start Tue Mar 31 2020 20:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00080 * 2 1 4 4 C 1.52996 * 109.47015 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46905 * 65.00593 * 4 3 2 6 6 C 1.36943 * 119.99943 * 269.99478 * 5 4 3 7 7 H 1.07993 * 119.99637 * 146.28635 * 6 5 4 8 8 C 1.38807 * 119.99918 * 326.29257 * 6 5 4 9 9 N 1.31623 * 119.99752 * 336.44436 * 8 6 5 10 10 Si 1.86795 * 120.00244 * 156.44695 * 8 6 5 11 11 H 1.48509 * 109.47060 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47314 * 119.99429 * 10 8 6 13 13 H 1.48495 * 109.47303 * 239.99877 * 10 8 6 14 14 C 1.46496 * 120.00194 * 89.99709 * 5 4 3 15 15 C 1.50698 * 109.47258 * 266.65361 * 14 5 4 16 16 C 1.38145 * 119.97766 * 114.99846 * 15 14 5 17 17 C 1.39951 * 118.92178 * 179.97438 * 16 15 14 18 18 O 1.22101 * 120.51525 * 180.02562 * 17 16 15 19 19 N 1.35016 * 118.96852 * 359.97438 * 17 16 15 20 20 C 1.36219 * 119.65430 * 179.97438 * 19 17 16 21 21 C 1.35299 * 120.72829 * 180.02562 * 20 19 17 22 22 Cl 1.73601 * 119.93667 * 179.97438 * 21 20 19 23 23 C 1.40279 * 120.12672 * 359.97438 * 21 20 19 24 24 C 1.36259 * 119.55339 * 0.02562 * 23 21 20 25 25 C 1.36686 * 119.87626 * 359.97438 * 19 17 16 26 26 N 1.32367 * 119.97310 * 294.93280 * 15 14 5 27 27 H 1.08994 * 109.47431 * 59.99714 * 1 2 3 28 28 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46873 * 299.99402 * 1 2 3 30 30 H 1.09005 * 109.46731 * 60.00088 * 3 2 1 31 31 H 1.09001 * 109.47160 * 300.00439 * 3 2 1 32 32 H 1.08999 * 109.47315 * 305.00366 * 4 3 2 33 33 H 1.08998 * 109.47111 * 185.00205 * 4 3 2 34 34 H 0.97006 * 119.99616 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.47280 * 146.65371 * 14 5 4 36 36 H 1.09002 * 109.47388 * 26.65399 * 14 5 4 37 37 H 1.07996 * 120.53286 * 0.25682 * 16 15 14 38 38 H 1.07998 * 119.63663 * 0.02562 * 20 19 17 39 39 H 1.08003 * 120.22551 * 179.97438 * 23 21 20 40 40 H 1.08007 * 120.26173 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.0978 -0.7975 -1.3346 7 1 3.8827 -1.3025 -2.2646 8 6 4.4969 -1.5283 -0.2240 9 7 5.1882 -0.9463 0.7330 10 14 4.0531 -3.3376 -0.0877 11 1 3.2780 -3.7488 -1.2859 12 1 5.2952 -4.1467 0.0005 13 1 3.2328 -3.5556 1.1307 14 6 4.2882 1.3999 -2.4130 15 6 3.0650 1.5250 -3.2843 16 6 2.4602 2.7556 -3.4524 17 6 1.3257 2.8466 -4.2668 18 8 0.7684 3.9197 -4.4360 19 7 0.8577 1.7294 -4.8634 20 6 -0.2459 1.8019 -5.6586 21 6 -0.7338 0.6960 -6.2665 22 17 -2.1420 0.8117 -7.2751 23 6 -0.1039 -0.5440 -6.0834 24 6 1.0006 -0.6260 -5.2896 25 6 1.4927 0.5352 -4.6661 26 7 2.5717 0.4558 -3.8890 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5684 0.8426 33 1 3.9785 2.1764 0.0902 34 1 5.4668 -1.4569 1.5093 35 1 5.0958 0.9417 -2.9841 36 1 4.5973 2.3895 -2.0764 37 1 2.8592 3.6339 -2.9669 38 1 -0.7369 2.7525 -5.8054 39 1 -0.4922 -1.4279 -6.5675 40 1 1.4949 -1.5748 -5.1410 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459537629.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:50 Heat of formation + Delta-G solvation = 8.596256 kcal Electronic energy + Delta-G solvation = -27584.149570 eV Core-core repulsion = 23619.800094 eV Total energy + Delta-G solvation = -3964.349475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.75967 -39.61581 -39.26695 -38.56345 -37.76378 -36.72271 -35.07881 -33.63856 -32.44259 -30.94256 -30.57590 -28.18244 -27.21091 -26.22415 -25.44645 -24.57345 -23.59570 -22.14962 -20.23105 -19.69852 -18.80790 -18.45406 -17.77923 -17.36784 -17.09618 -16.78667 -16.63146 -16.42221 -15.86690 -15.69751 -15.43343 -15.27943 -14.91550 -14.81188 -14.71230 -14.00666 -13.82764 -13.45419 -13.44305 -13.40306 -12.87411 -12.71081 -12.63376 -12.55881 -12.33857 -12.23918 -11.91282 -11.85654 -11.58283 -11.52399 -11.49562 -11.02172 -10.51396 -10.33887 -10.26083 -8.86444 -8.54414 -7.69839 -5.22649 -0.97111 -0.70860 0.47638 0.82235 1.25130 1.47525 1.51912 1.56771 1.64930 2.57283 2.72611 2.88125 3.11619 3.13983 3.34475 3.42337 3.49235 3.67609 3.75348 4.06180 4.28216 4.32458 4.39199 4.41326 4.50483 4.52745 4.64549 4.68673 4.70495 4.76782 4.84594 4.84963 4.94612 4.97765 5.06355 5.24661 5.36924 5.79783 5.94283 6.44979 6.49702 6.66814 6.81078 7.28836 7.95638 8.43655 9.30111 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.004015 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.286093 B = 6971.521031 C = 7591.198211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.057 3.943 4 C 0.136 3.864 5 N -0.572 5.572 6 C -0.218 4.218 7 H 0.062 0.938 8 C -0.031 4.031 9 N -0.922 5.922 10 Si 0.945 3.055 11 H -0.269 1.269 12 H -0.297 1.297 13 H -0.301 1.301 14 C 0.181 3.819 15 C 0.219 3.781 16 C -0.349 4.349 17 C 0.502 3.498 18 O -0.577 6.577 19 N -0.426 5.426 20 C 0.088 3.912 21 C -0.072 4.072 22 Cl -0.013 7.013 23 C -0.015 4.015 24 C -0.114 4.114 25 C 0.369 3.631 26 N -0.523 5.523 27 H 0.025 0.975 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.023 0.977 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.245 0.755 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.158 0.842 38 H 0.186 0.814 39 H 0.203 0.797 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 1.769 -14.419 19.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.022 4.022 4 C 0.009 3.991 5 N -0.291 5.291 6 C -0.348 4.348 7 H 0.080 0.920 8 C -0.227 4.227 9 N -0.568 5.568 10 Si 0.776 3.224 11 H -0.194 1.194 12 H -0.225 1.225 13 H -0.228 1.228 14 C 0.053 3.947 15 C 0.085 3.915 16 C -0.374 4.374 17 C 0.312 3.688 18 O -0.461 6.461 19 N -0.129 5.129 20 C -0.036 4.036 21 C -0.102 4.102 22 Cl 0.015 6.985 23 C -0.039 4.039 24 C -0.134 4.134 25 C 0.126 3.874 26 N -0.246 5.246 27 H 0.043 0.957 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.176 0.824 38 H 0.203 0.797 39 H 0.220 0.780 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -13.191 1.589 -14.182 19.433 hybrid contribution -0.870 0.435 0.408 1.055 sum -14.061 2.024 -13.774 19.787 Atomic orbital electron populations 1.22744 0.82129 1.02566 0.99184 1.88149 1.18984 1.28438 1.95044 1.23232 0.97518 0.83905 0.97547 1.21140 0.89008 0.96926 0.91996 1.43744 1.75183 1.02811 1.07321 1.19109 1.35987 0.82269 0.97447 0.92034 1.25421 0.98066 1.00236 0.98933 1.70085 1.38422 1.36848 1.11467 0.85554 0.76990 0.82640 0.77250 1.19382 1.22502 1.22816 1.20055 0.90174 0.96531 0.87929 1.23018 0.95071 0.86888 0.86475 1.22639 1.01545 1.00990 1.12268 1.17278 0.86852 0.82384 0.82333 1.90919 1.62395 1.26574 1.66237 1.44331 1.22368 1.11218 1.34980 1.22163 0.87967 1.02106 0.91353 1.20342 0.95093 0.94034 1.00754 1.98425 1.36157 1.98329 1.65547 1.21797 0.91379 0.97551 0.93197 1.21289 0.97882 0.96728 0.97498 1.21458 0.88730 0.85243 0.92000 1.68964 1.11418 1.30643 1.13592 0.95679 0.89454 0.93519 0.93866 0.95856 0.90177 0.92338 0.94533 0.91219 0.89831 0.82393 0.79658 0.78030 0.79333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 11.01 113.37 1.25 2.27 16 2 O -0.39 -17.18 10.18 -148.98 -1.52 -18.69 16 3 C 0.06 2.33 6.28 71.98 0.45 2.78 16 4 C 0.14 6.18 5.77 86.38 0.50 6.67 16 5 N -0.57 -26.94 2.42 -706.36 -1.71 -28.65 16 6 C -0.22 -11.46 8.89 84.03 0.75 -10.72 16 7 H 0.06 3.31 7.84 -2.91 -0.02 3.29 16 8 C -0.03 -1.70 4.94 84.86 0.42 -1.28 16 9 N -0.92 -52.88 11.33 21.65 0.25 -52.63 16 10 Si 0.95 45.47 29.61 68.60 2.03 47.50 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 13 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 14 C 0.18 7.13 6.11 85.63 0.52 7.65 16 15 C 0.22 8.09 5.87 42.46 0.25 8.34 16 16 C -0.35 -12.25 9.39 22.66 0.21 -12.04 16 17 C 0.50 17.58 7.36 84.62 0.62 18.20 16 18 O -0.58 -22.32 16.69 -5.65 -0.09 -22.42 16 19 N -0.43 -12.39 2.76 -478.54 -1.32 -13.71 16 20 C 0.09 1.95 9.84 83.33 0.82 2.77 16 21 C -0.07 -1.15 6.28 22.09 0.14 -1.01 16 22 Cl -0.01 -0.17 28.94 -2.72 -0.08 -0.25 16 23 C -0.02 -0.20 9.87 22.30 0.22 0.02 16 24 C -0.11 -2.26 9.96 22.41 0.22 -2.04 16 25 C 0.37 10.78 7.33 133.98 0.98 11.76 16 26 N -0.52 -18.95 10.06 -181.00 -1.82 -20.78 16 27 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.02 0.95 7.32 -2.39 -0.02 0.94 16 32 H 0.08 4.29 5.32 -2.39 -0.01 4.28 16 33 H 0.06 2.40 7.87 -2.39 -0.02 2.38 16 34 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16 35 H 0.07 2.81 8.07 -2.38 -0.02 2.79 16 36 H 0.08 2.91 7.61 -2.39 -0.02 2.89 16 37 H 0.16 5.19 7.97 -2.91 -0.02 5.17 16 38 H 0.19 3.99 7.34 -2.91 -0.02 3.96 16 39 H 0.20 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.19 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -70.45 358.55 4.16 -66.29 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.07 Total: 9.94 kcal Atomic # 6 Polarization: 26.03 SS G_CDS: 7.36 Total: 33.39 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -4.61 Total: -115.76 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -1.61 Total: -41.11 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.25 kcal Total: -70.45 4.16 -66.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459537629.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.888 kcal (2) G-P(sol) polarization free energy of solvation -70.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds