Wall clock time and date at job start Tue Mar 31 2020 20:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99853 * 2 1 4 4 C 1.53001 * 109.47310 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46795 * 65.00075 * 4 3 2 6 6 C 1.36932 * 119.99862 * 270.00142 * 5 4 3 7 7 H 1.07999 * 119.99890 * 142.57363 * 6 5 4 8 8 C 1.38810 * 120.00206 * 322.56932 * 6 5 4 9 9 N 1.31617 * 120.00064 * 157.37311 * 8 6 5 10 10 Si 1.86797 * 119.99934 * 337.37647 * 8 6 5 11 11 H 1.48494 * 109.47191 * 95.36786 * 10 8 6 12 12 H 1.48504 * 109.46920 * 215.36832 * 10 8 6 13 13 H 1.48502 * 109.47192 * 335.36622 * 10 8 6 14 14 C 1.46505 * 120.00081 * 89.99977 * 5 4 3 15 15 C 1.50699 * 109.46871 * 270.13794 * 14 5 4 16 16 N 1.30368 * 126.18823 * 89.69358 * 15 14 5 17 17 N 1.28664 * 109.52861 * 179.97438 * 16 15 14 18 18 C 1.31239 * 109.24938 * 359.97438 * 17 16 15 19 19 C 1.47834 * 126.38112 * 179.97438 * 18 17 16 20 20 C 1.39574 * 120.13050 * 179.74973 * 19 18 17 21 21 C 1.37936 * 119.86513 * 179.79131 * 20 19 18 22 22 C 1.38476 * 120.13103 * 0.49040 * 21 20 19 23 23 Cl 1.73602 * 119.86751 * 179.76660 * 22 21 20 24 24 C 1.38480 * 120.26624 * 359.73952 * 22 21 20 25 25 C 1.37938 * 120.12421 * 0.02562 * 24 22 21 26 26 O 1.34422 * 126.18466 * 269.68252 * 15 14 5 27 27 H 1.09005 * 109.46724 * 179.97438 * 1 2 3 28 28 H 1.08989 * 109.47654 * 300.00351 * 1 2 3 29 29 H 1.08998 * 109.46763 * 60.00693 * 1 2 3 30 30 H 1.09003 * 109.46960 * 59.99489 * 3 2 1 31 31 H 1.09000 * 109.47552 * 299.99921 * 3 2 1 32 32 H 1.08997 * 109.47248 * 305.00360 * 4 3 2 33 33 H 1.09001 * 109.47256 * 184.99668 * 4 3 2 34 34 H 0.97003 * 120.00195 * 180.02562 * 9 8 6 35 35 H 1.08993 * 109.47338 * 150.13249 * 14 5 4 36 36 H 1.09000 * 109.46600 * 30.13466 * 14 5 4 37 37 H 1.07992 * 120.06419 * 0.02733 * 20 19 18 38 38 H 1.07999 * 119.92725 * 180.22951 * 21 20 19 39 39 H 1.08001 * 119.93704 * 180.02562 * 24 22 21 40 40 H 1.08000 * 120.05791 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7974 -1.3345 7 1 3.8254 -1.3088 -2.2459 8 6 4.5708 -1.5201 -0.2479 9 7 4.2853 -2.7999 -0.1342 10 14 5.6123 -0.6763 1.0531 11 1 4.7449 -0.2451 2.1785 12 1 6.6402 -1.6233 1.5550 13 1 6.2799 0.5101 0.4598 14 6 4.2882 1.3999 -2.4131 15 6 3.0432 1.5954 -3.2394 16 7 2.1701 2.5536 -3.1011 17 7 1.2352 2.4128 -3.9738 18 6 1.4823 1.3516 -4.7052 19 6 0.6528 0.8404 -5.8170 20 6 1.0436 -0.3039 -6.5141 21 6 0.2633 -0.7785 -7.5478 22 6 -0.9004 -0.1163 -7.9009 23 17 -1.8742 -0.7163 -9.2069 24 6 -1.2909 1.0222 -7.2161 25 6 -0.5212 1.5035 -6.1775 26 8 2.6323 0.8134 -4.2526 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8898 29 1 -0.3633 0.5137 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9784 2.1766 0.0902 34 1 4.6155 -3.3049 0.6254 35 1 5.0525 0.9116 -3.0175 36 1 4.6561 2.3688 -2.0755 37 1 1.9532 -0.8187 -6.2422 38 1 0.5629 -1.6660 -8.0854 39 1 -2.1998 1.5342 -7.4957 40 1 -0.8270 2.3913 -5.6439 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459538795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:05 Heat of formation + Delta-G solvation = 25.288851 kcal Electronic energy + Delta-G solvation = -26728.043229 eV Core-core repulsion = 22764.417599 eV Total energy + Delta-G solvation = -3963.625630 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.09455 -40.37487 -39.14576 -37.61375 -37.44953 -37.15894 -34.22992 -33.51580 -32.31993 -31.70892 -30.40063 -28.22143 -27.29343 -25.41968 -25.13858 -24.15971 -23.30284 -22.77397 -22.40215 -19.10198 -18.83414 -18.36740 -17.84097 -17.63437 -17.25376 -16.99459 -16.61380 -16.39780 -16.01272 -15.72237 -15.36873 -15.30355 -14.78116 -14.68881 -14.68134 -14.21740 -13.70654 -13.51743 -13.34914 -13.14935 -13.12792 -12.97960 -12.80604 -12.70845 -12.66861 -12.41628 -12.25592 -12.02790 -11.88620 -11.77048 -11.50072 -11.10244 -10.64121 -10.43750 -10.25623 -9.55224 -9.03054 -8.14527 -5.59692 -0.72869 0.12320 0.53573 0.96837 1.26988 1.36470 1.38625 1.47870 1.58104 2.47505 2.47856 2.74640 2.98702 3.04197 3.33525 3.40173 3.64963 3.73458 3.94710 4.03479 4.21676 4.25931 4.29930 4.35783 4.40874 4.43112 4.46578 4.49822 4.54360 4.62201 4.65685 4.73537 4.81673 4.82907 4.98747 5.01181 5.01757 5.20633 5.49256 5.90179 6.16500 6.43640 6.86666 7.23424 7.56434 7.90029 9.04246 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.016875 B = 0.002950 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.836115 B = 9489.297793 C = 9730.381639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.038 3.962 4 C 0.122 3.878 5 N -0.584 5.584 6 C -0.257 4.257 7 H 0.031 0.969 8 C -0.002 4.002 9 N -0.941 5.941 10 Si 0.942 3.058 11 H -0.280 1.280 12 H -0.311 1.311 13 H -0.238 1.238 14 C 0.222 3.778 15 C 0.177 3.823 16 N -0.310 5.310 17 N -0.294 5.294 18 C 0.182 3.818 19 C -0.033 4.033 20 C -0.079 4.079 21 C -0.106 4.106 22 C -0.018 4.018 23 Cl -0.052 7.052 24 C -0.103 4.103 25 C -0.059 4.059 26 O -0.228 6.228 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.025 0.975 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.106 0.894 34 H 0.261 0.739 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.163 0.837 39 H 0.171 0.829 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.991 9.774 -13.360 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.314 6.314 3 C -0.040 4.040 4 C -0.003 4.003 5 N -0.304 5.304 6 C -0.386 4.386 7 H 0.049 0.951 8 C -0.199 4.199 9 N -0.583 5.583 10 Si 0.769 3.231 11 H -0.208 1.208 12 H -0.240 1.240 13 H -0.161 1.161 14 C 0.093 3.907 15 C -0.037 4.037 16 N -0.158 5.158 17 N -0.141 5.141 18 C -0.026 4.026 19 C -0.035 4.035 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.045 4.045 23 Cl -0.023 7.023 24 C -0.121 4.121 25 C -0.078 4.078 26 O -0.106 6.106 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.180 0.820 39 H 0.189 0.811 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.472 10.473 -12.880 19.113 hybrid contribution 0.497 -1.248 0.324 1.381 sum -8.975 9.225 -12.556 17.981 Atomic orbital electron populations 1.22719 0.81728 1.02332 0.99574 1.88189 1.19461 1.28576 1.95212 1.23324 0.96491 0.84375 0.99836 1.21712 0.91529 0.98441 0.88599 1.44131 1.75106 1.02911 1.08262 1.18285 1.38504 0.81269 1.00557 0.95109 1.25889 0.98581 0.95279 1.00166 1.70029 1.46005 1.10459 1.31813 0.85914 0.78737 0.79009 0.79390 1.20775 1.23983 1.16054 1.19993 0.85404 0.98882 0.86471 1.30845 1.01332 0.84952 0.86521 1.74218 1.00789 1.22726 1.18037 1.74482 1.20005 1.15641 1.04008 1.25857 0.86130 0.91846 0.98804 1.17534 0.95016 0.98128 0.92841 1.21332 1.00219 0.93992 0.94329 1.21174 0.93050 1.01089 0.97126 1.21298 0.93955 0.96426 0.92837 1.98396 1.69771 1.87437 1.46697 1.21244 1.01229 0.95095 0.94517 1.21235 0.91184 0.99455 0.95933 1.84926 1.34544 1.49649 1.41506 0.90226 0.92589 0.95609 0.92446 0.93510 0.93409 0.87644 0.92962 0.87901 0.84767 0.84422 0.81957 0.81136 0.83001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.21 11.01 113.37 1.25 2.46 16 2 O -0.40 -18.40 10.18 -148.98 -1.52 -19.91 16 3 C 0.04 1.51 6.28 71.98 0.45 1.96 16 4 C 0.12 4.85 4.98 86.38 0.43 5.28 16 5 N -0.58 -25.61 2.04 -706.34 -1.44 -27.05 16 6 C -0.26 -14.02 9.42 84.03 0.79 -13.23 16 7 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 8 C 0.00 -0.09 5.30 84.86 0.45 0.36 16 9 N -0.94 -58.21 13.97 21.65 0.30 -57.91 16 10 Si 0.94 43.68 25.06 68.60 1.72 45.40 16 11 H -0.28 -12.72 6.66 99.48 0.66 -12.06 16 12 H -0.31 -14.84 7.11 99.48 0.71 -14.14 16 13 H -0.24 -9.76 7.11 99.48 0.71 -9.06 16 14 C 0.22 7.80 6.33 85.63 0.54 8.34 16 15 C 0.18 6.68 7.65 88.33 0.68 7.36 16 16 N -0.31 -11.73 10.79 -165.34 -1.78 -13.51 16 17 N -0.29 -10.75 11.92 -166.32 -1.98 -12.74 16 18 C 0.18 6.33 7.99 87.32 0.70 7.03 16 19 C -0.03 -0.90 5.87 -20.09 -0.12 -1.02 16 20 C -0.08 -1.88 9.73 22.52 0.22 -1.66 16 21 C -0.11 -1.98 9.81 22.25 0.22 -1.76 16 22 C -0.02 -0.31 6.32 22.38 0.14 -0.17 16 23 Cl -0.05 -0.79 28.95 -2.72 -0.08 -0.87 16 24 C -0.10 -1.70 9.81 22.26 0.22 -1.48 16 25 C -0.06 -1.25 9.70 22.52 0.22 -1.03 16 26 O -0.23 -8.84 10.67 -8.55 -0.09 -8.93 16 27 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.88 6.19 -2.39 -0.01 1.86 16 32 H 0.05 2.12 3.27 -2.39 -0.01 2.12 16 33 H 0.11 3.27 7.89 -2.39 -0.02 3.25 16 34 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.10 3.42 8.04 -2.39 -0.02 3.40 16 36 H 0.13 3.63 7.90 -2.39 -0.02 3.61 16 37 H 0.14 3.40 7.93 -2.91 -0.02 3.38 16 38 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 40 H 0.15 3.07 7.86 -2.91 -0.02 3.05 16 Total: -1.00 -72.14 358.79 2.34 -69.79 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.03 Total: 13.31 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.19 Total: 12.43 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -4.91 Total: -111.21 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -1.61 Total: -28.84 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.72 Total: 45.40 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -72.14 2.34 -69.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459538795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.081 kcal (2) G-P(sol) polarization free energy of solvation -72.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds