Wall clock time and date at job start Tue Mar 31 2020 20:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99659 * 2 1 4 4 C 1.53008 * 109.47132 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46652 * 65.00225 * 4 3 2 6 6 C 1.36933 * 120.00115 * 264.83521 * 5 4 3 7 7 H 1.08005 * 119.99829 * 8.70433 * 6 5 4 8 8 C 1.38812 * 120.00291 * 188.70183 * 6 5 4 9 9 N 1.31615 * 119.99713 * 24.98065 * 8 6 5 10 10 Si 1.86802 * 120.00107 * 204.98569 * 8 6 5 11 11 H 1.48495 * 109.47083 * 59.99597 * 10 8 6 12 12 H 1.48493 * 109.46895 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47181 * 299.99928 * 10 8 6 14 14 C 1.46499 * 119.99852 * 84.84033 * 5 4 3 15 15 C 1.50700 * 109.47380 * 89.99783 * 14 5 4 16 16 O 1.21283 * 119.99739 * 359.97438 * 15 14 5 17 17 N 1.34772 * 120.00398 * 179.97438 * 15 14 5 18 18 C 1.39399 * 120.00380 * 184.44264 * 17 15 14 19 19 C 1.38742 * 120.15524 * 331.63847 * 18 17 15 20 20 C 1.38211 * 120.06723 * 179.97438 * 19 18 17 21 21 Cl 1.73595 * 119.81202 * 179.97438 * 20 19 18 22 22 C 1.38681 * 120.37484 * 0.02562 * 20 19 18 23 23 C 1.37783 * 120.31528 * 359.67038 * 22 20 19 24 24 C 1.39723 * 119.92421 * 0.62985 * 23 22 20 25 25 C 1.43199 * 120.18350 * 179.67460 * 24 23 22 26 26 N 9.18808 * 123.80376 * 294.01564 * 2 1 3 27 27 H 1.08999 * 109.47123 * 60.00045 * 1 2 3 28 28 H 1.09000 * 109.46615 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47229 * 299.99436 * 1 2 3 30 30 H 1.08999 * 109.47073 * 60.00193 * 3 2 1 31 31 H 1.08993 * 109.47467 * 299.99756 * 3 2 1 32 32 H 1.08993 * 109.47164 * 305.00711 * 4 3 2 33 33 H 1.08994 * 109.47079 * 185.00389 * 4 3 2 34 34 H 0.97004 * 120.00019 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47257 * 329.99800 * 14 5 4 36 36 H 1.09006 * 109.47086 * 209.99569 * 14 5 4 37 37 H 0.97008 * 119.99686 * 4.44032 * 17 15 14 38 38 H 1.08002 * 119.96669 * 359.97438 * 19 18 17 39 39 H 1.08007 * 119.84010 * 179.97438 * 22 20 19 40 40 H 1.08001 * 120.03624 * 180.32454 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.1997 -0.7858 -1.3044 7 1 3.9181 -1.4130 -0.4714 8 6 4.7876 -1.3483 -2.4290 9 7 5.5598 -0.6162 -3.2036 10 14 4.4825 -3.1441 -2.8433 11 1 3.0287 -3.3643 -3.0503 12 1 5.2179 -3.4977 -4.0839 13 1 4.9581 -3.9977 -1.7250 14 6 4.1793 1.3879 -2.4454 15 6 5.6034 1.8793 -2.4810 16 8 6.3733 1.5721 -1.5956 17 7 6.0217 2.6601 -3.4968 18 6 7.3608 3.0384 -3.5794 19 6 8.1256 3.1511 -2.4273 20 6 9.4533 3.5258 -2.5114 21 17 10.4040 3.6653 -1.0656 22 6 10.0301 3.7920 -3.7442 23 6 9.2868 3.6789 -4.8988 24 6 7.9417 3.3072 -4.8282 25 6 7.1621 3.1947 -6.0241 26 7 6.5408 3.1073 -6.9739 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5686 0.8426 33 1 3.9784 2.1766 0.0903 34 1 5.9710 -1.0093 -3.9894 35 1 3.5012 2.2409 -2.4178 36 1 3.9781 0.7923 -3.3359 37 1 5.3908 2.9589 -4.1704 38 1 7.6831 2.9458 -1.4638 39 1 11.0683 4.0845 -3.7999 40 1 9.7419 3.8822 -5.8569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459538831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:37 Heat of formation + Delta-G solvation = -7.650368 kcal Electronic energy + Delta-G solvation = -26735.270301 eV Core-core repulsion = 22770.216320 eV Total energy + Delta-G solvation = -3965.053982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.50298 -39.65731 -38.70581 -37.82748 -37.17504 -36.82114 -35.40841 -33.46539 -32.11072 -31.37741 -30.20361 -28.44017 -27.09930 -25.21046 -24.82943 -24.01387 -22.29169 -21.20974 -20.14782 -18.97030 -18.30835 -17.81311 -17.30779 -17.04304 -16.54963 -16.42464 -16.26898 -15.74424 -15.67465 -15.27173 -15.16147 -14.87591 -14.68710 -14.47445 -14.32941 -14.06142 -13.97651 -13.52185 -13.28459 -13.02876 -12.85905 -12.79697 -12.68928 -12.59706 -12.47105 -12.19917 -12.06769 -11.95815 -11.88840 -11.68087 -11.23901 -10.67406 -10.36992 -10.25088 -9.78882 -9.08537 -8.86209 -7.87206 -5.08496 -0.39159 0.31552 1.08742 1.46662 1.49436 1.54790 1.55624 1.82337 2.09403 2.35805 2.58826 2.78399 2.92809 3.13875 3.32639 3.61870 3.81176 4.14750 4.16739 4.25812 4.37082 4.45164 4.47857 4.57338 4.64720 4.67882 4.78338 4.81485 4.91370 4.93009 4.98068 5.15650 5.17796 5.28084 5.31233 5.42770 5.74461 5.88597 6.24587 6.39642 6.56014 6.62528 7.15981 7.65144 7.90467 8.25297 9.20427 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.003709 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.631080 B = 7548.082921 C = 8117.608206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.052 3.948 4 C 0.145 3.855 5 N -0.577 5.577 6 C -0.222 4.222 7 H 0.066 0.934 8 C -0.050 4.050 9 N -0.919 5.919 10 Si 0.951 3.049 11 H -0.285 1.285 12 H -0.301 1.301 13 H -0.289 1.289 14 C 0.164 3.836 15 C 0.532 3.468 16 O -0.535 6.535 17 N -0.676 5.676 18 C 0.225 3.775 19 C -0.152 4.152 20 C 0.012 3.988 21 Cl -0.061 7.061 22 C -0.136 4.136 23 C -0.018 4.018 24 C -0.085 4.085 25 C 0.278 3.722 26 N -0.452 5.452 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.242 0.758 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.411 0.589 38 H 0.141 0.859 39 H 0.175 0.825 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.781 13.701 0.341 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C -0.027 4.027 4 C 0.019 3.981 5 N -0.296 5.296 6 C -0.352 4.352 7 H 0.084 0.916 8 C -0.244 4.244 9 N -0.567 5.567 10 Si 0.782 3.218 11 H -0.211 1.211 12 H -0.228 1.228 13 H -0.216 1.216 14 C 0.033 3.967 15 C 0.321 3.679 16 O -0.409 6.409 17 N -0.320 5.320 18 C 0.123 3.877 19 C -0.174 4.174 20 C -0.016 4.016 21 Cl -0.032 7.032 22 C -0.155 4.155 23 C -0.039 4.039 24 C -0.092 4.092 25 C -0.036 4.036 26 N -0.128 5.128 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.247 0.753 38 H 0.159 0.841 39 H 0.192 0.808 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.489 13.021 -0.394 13.263 hybrid contribution -0.254 -1.113 -0.081 1.144 sum 2.235 11.908 -0.476 12.126 Atomic orbital electron populations 1.22814 0.80974 1.02801 1.00247 1.88042 1.20174 1.28890 1.95330 1.23233 0.95357 0.84294 0.99801 1.20995 0.91678 0.97238 0.88156 1.43931 1.75332 1.03905 1.06433 1.19252 1.31442 0.83281 1.01234 0.91608 1.25105 0.98899 1.00366 1.00005 1.69935 1.32391 1.36428 1.17932 0.85559 0.77351 0.82452 0.76424 1.21136 1.22825 1.21561 1.20717 0.89333 0.94116 0.92544 1.22596 0.93127 0.73093 0.79061 1.90462 1.56342 1.54827 1.39232 1.43937 1.07336 1.50713 1.30035 1.17793 0.85552 0.92433 0.91876 1.21220 0.93643 1.03137 0.99392 1.21152 0.91537 0.99816 0.89079 1.98374 1.71209 1.96071 1.37549 1.21167 1.02356 1.03355 0.88655 1.21248 0.89111 0.93134 1.00411 1.15961 0.94309 1.14180 0.84715 1.25636 0.92962 0.92382 0.92664 1.81353 1.08930 1.10881 1.11656 0.94122 0.89924 0.92887 0.91675 0.93628 0.93700 0.91384 0.94851 0.90363 0.89732 0.75301 0.84110 0.80764 0.80374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.41 -14.84 10.42 -148.98 -1.55 -16.39 16 3 C 0.05 1.65 6.28 71.98 0.45 2.10 16 4 C 0.15 5.59 6.07 86.38 0.52 6.12 16 5 N -0.58 -26.92 1.98 -706.33 -1.40 -28.31 16 6 C -0.22 -11.96 9.44 84.03 0.79 -11.16 16 7 H 0.07 3.67 7.94 -2.91 -0.02 3.65 16 8 C -0.05 -2.73 4.89 84.86 0.42 -2.31 16 9 N -0.92 -51.07 8.96 21.65 0.19 -50.88 16 10 Si 0.95 46.27 29.62 68.60 2.03 48.30 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 12 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 13 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 14 C 0.16 6.94 5.45 85.63 0.47 7.41 16 15 C 0.53 22.70 5.76 87.66 0.50 23.21 16 16 O -0.53 -26.68 13.19 -3.04 -0.04 -26.72 16 17 N -0.68 -23.57 5.11 -302.90 -1.55 -25.12 16 18 C 0.23 7.23 6.42 38.57 0.25 7.47 16 19 C -0.15 -4.99 8.52 22.38 0.19 -4.79 16 20 C 0.01 0.32 6.32 22.37 0.14 0.46 16 21 Cl -0.06 -1.51 28.94 -2.72 -0.08 -1.58 16 22 C -0.14 -2.56 9.80 22.27 0.22 -2.34 16 23 C -0.02 -0.34 9.75 22.52 0.22 -0.12 16 24 C -0.08 -2.22 5.75 -21.17 -0.12 -2.34 16 25 C 0.28 7.94 14.31 88.30 1.26 9.21 16 26 N -0.45 -14.52 18.55 19.03 0.35 -14.17 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.86 8.00 -2.39 -0.02 1.84 16 33 H 0.07 2.37 8.11 -2.39 -0.02 2.35 16 34 H 0.24 13.68 8.31 -92.71 -0.77 12.91 16 35 H 0.08 2.66 8.07 -2.39 -0.02 2.64 16 36 H 0.08 4.03 6.31 -2.38 -0.02 4.02 16 37 H 0.41 12.45 7.99 -92.70 -0.74 11.71 16 38 H 0.14 5.48 5.71 -2.91 -0.02 5.47 16 39 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 40 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -69.64 365.14 4.88 -64.76 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.35 Total: 15.21 kcal Atomic # 6 Polarization: 28.33 SS G_CDS: 6.56 Total: 34.89 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -2.40 Total: -118.47 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -1.59 Total: -43.11 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.58 kcal Total: -69.64 4.88 -64.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459538831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.109 kcal (2) G-P(sol) polarization free energy of solvation -69.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds