Wall clock time and date at job start Tue Mar 31 2020 20:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42906 * 113.99622 * 2 1 4 4 C 1.53002 * 109.46889 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47024 * 64.99683 * 4 3 2 6 6 C 1.36941 * 120.00243 * 271.08322 * 5 4 3 7 7 H 1.07999 * 119.99834 * 146.13506 * 6 5 4 8 8 C 1.38809 * 120.00188 * 326.14111 * 6 5 4 9 9 N 1.31627 * 119.99614 * 336.79294 * 8 6 5 10 10 Si 1.86798 * 120.00255 * 156.79379 * 8 6 5 11 11 H 1.48501 * 109.47030 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47278 * 119.99754 * 10 8 6 13 13 H 1.48500 * 109.47326 * 240.00259 * 10 8 6 14 14 C 1.46498 * 120.00089 * 91.08957 * 5 4 3 15 15 C 1.50713 * 109.46963 * 269.99920 * 14 5 4 16 16 N 1.30971 * 126.43371 * 89.99950 * 15 14 5 17 17 C 1.35225 * 105.57317 * 180.02562 * 16 15 14 18 18 C 1.48401 * 126.41386 * 179.97438 * 17 16 15 19 19 C 1.39344 * 120.10614 * 359.71715 * 18 17 16 20 20 C 1.37987 * 119.89223 * 179.79315 * 19 18 17 21 21 C 1.38453 * 120.10600 * 0.48595 * 20 19 18 22 22 Cl 1.73600 * 119.88992 * 179.76813 * 21 20 19 23 23 C 1.38442 * 120.21453 * 359.74317 * 21 20 19 24 24 C 1.37987 * 120.10762 * 0.02577 * 23 21 20 25 25 N 1.30774 * 107.17111 * 359.97438 * 17 16 15 26 26 O 1.21287 * 110.09449 * 0.02562 * 25 17 16 27 27 H 1.08998 * 109.47282 * 300.00744 * 1 2 3 28 28 H 1.09000 * 109.46761 * 59.99916 * 1 2 3 29 29 H 1.08994 * 109.46797 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47271 * 59.99873 * 3 2 1 31 31 H 1.08996 * 109.47285 * 299.99419 * 3 2 1 32 32 H 1.09007 * 109.46822 * 305.00017 * 4 3 2 33 33 H 1.08995 * 109.47454 * 184.99943 * 4 3 2 34 34 H 0.96996 * 119.99514 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47998 * 150.00105 * 14 5 4 36 36 H 1.08996 * 109.47395 * 29.99276 * 14 5 4 37 37 H 1.08001 * 120.05160 * 0.02562 * 19 18 17 38 38 H 1.08003 * 119.94665 * 180.23353 * 20 19 18 39 39 H 1.08001 * 119.95164 * 180.02562 * 23 21 20 40 40 H 1.08005 * 120.05428 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5641 -1.2508 6 6 4.0766 -0.7987 -1.3412 7 1 3.8585 -1.2953 -2.2751 8 6 4.4579 -1.5418 -0.2325 9 7 5.1472 -0.9743 0.7346 10 14 3.9928 -3.3470 -0.1130 11 1 3.2236 -3.7410 -1.3206 12 1 5.2250 -4.1705 -0.0199 13 1 3.1595 -3.5645 1.0967 14 6 4.3112 1.4012 -2.4056 15 6 3.0769 1.6187 -3.2427 16 7 2.2124 2.5942 -3.1148 17 6 1.2813 2.3818 -4.0721 18 6 0.0852 3.2189 -4.3388 19 6 -0.1665 4.3466 -3.5599 20 6 -1.2777 5.1241 -3.8145 21 6 -2.1472 4.7797 -4.8354 22 17 -3.5467 5.7586 -5.1469 23 6 -1.9040 3.6576 -5.6089 24 6 -0.7930 2.8764 -5.3651 25 7 1.6321 1.3008 -4.7189 26 8 2.6590 0.8523 -4.2548 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6885 1.8465 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.8508 0.5686 0.8428 33 1 3.9785 2.1766 0.0902 34 1 5.4134 -1.4935 1.5095 35 1 5.0741 0.9050 -3.0054 36 1 4.6896 2.3630 -2.0596 37 1 0.5090 4.6137 -2.7608 38 1 -1.4716 6.0005 -3.2138 39 1 -2.5849 3.3931 -6.4044 40 1 -0.6043 2.0009 -5.9688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459544822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:02 Heat of formation + Delta-G solvation = 54.017464 kcal Electronic energy + Delta-G solvation = -26823.896448 eV Core-core repulsion = 22861.516584 eV Total energy + Delta-G solvation = -3962.379864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.39570 -40.40555 -38.98385 -37.65735 -37.39586 -36.54666 -34.33673 -33.03457 -32.26610 -31.56462 -30.65640 -28.22921 -27.24474 -25.72790 -25.28469 -24.26429 -23.37984 -22.60823 -21.76065 -19.10126 -18.95105 -18.63430 -17.90613 -17.40192 -16.90566 -16.77199 -16.54410 -16.38306 -15.85359 -15.55417 -15.36270 -15.03993 -14.95115 -14.73697 -14.64042 -13.89151 -13.50649 -13.39915 -13.30749 -13.03397 -12.81795 -12.74426 -12.68126 -12.65436 -12.42433 -12.34616 -12.12485 -11.99977 -11.93224 -11.82485 -11.58536 -11.15234 -10.53968 -10.39007 -10.21996 -9.65640 -8.76130 -7.85512 -5.41931 -0.52893 0.15046 0.38786 0.99046 1.38059 1.46657 1.52578 1.60429 2.01630 2.49091 2.56152 2.56687 3.01563 3.13256 3.33476 3.61032 3.70771 3.77779 4.02574 4.10519 4.30194 4.32422 4.39879 4.48240 4.52163 4.56715 4.63692 4.69241 4.71683 4.81886 4.84901 4.89238 4.93983 4.94895 5.04436 5.15933 5.29808 5.54408 5.70788 5.78995 6.35832 6.58726 7.10790 7.19924 7.77219 8.22594 9.13976 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.019175 B = 0.002931 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.851768 B = 9551.248541 C = 9890.730770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.394 6.394 3 C 0.047 3.953 4 C 0.136 3.864 5 N -0.565 5.565 6 C -0.256 4.256 7 H 0.052 0.948 8 C -0.009 4.009 9 N -0.905 5.905 10 Si 0.945 3.055 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.295 1.295 14 C 0.218 3.782 15 C 0.201 3.799 16 N -0.494 5.494 17 C 0.196 3.804 18 C -0.030 4.030 19 C -0.067 4.067 20 C -0.106 4.106 21 C -0.023 4.023 22 Cl -0.055 7.055 23 C -0.106 4.106 24 C -0.079 4.079 25 N -0.405 5.405 26 O 0.059 5.941 27 H 0.051 0.949 28 H 0.024 0.976 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.253 0.747 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.145 0.855 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.691 13.419 -8.482 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.313 6.313 3 C -0.031 4.031 4 C 0.010 3.990 5 N -0.284 5.284 6 C -0.386 4.386 7 H 0.070 0.930 8 C -0.207 4.207 9 N -0.549 5.549 10 Si 0.775 3.225 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.222 1.222 14 C 0.087 3.913 15 C -0.022 4.022 16 N -0.228 5.228 17 C -0.074 4.074 18 C -0.032 4.032 19 C -0.087 4.087 20 C -0.125 4.125 21 C -0.050 4.050 22 Cl -0.026 7.026 23 C -0.125 4.125 24 C -0.100 4.100 25 N -0.117 5.117 26 O 0.005 5.995 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.120 0.880 36 H 0.134 0.866 37 H 0.163 0.837 38 H 0.182 0.818 39 H 0.180 0.820 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.176 13.250 -8.814 20.661 hybrid contribution -0.466 -1.044 0.287 1.179 sum -13.643 12.206 -8.527 20.195 Atomic orbital electron populations 1.22731 0.82128 1.02383 0.99359 1.88128 1.19023 1.28985 1.95150 1.23313 0.97370 0.83798 0.98615 1.21223 0.89136 0.97257 0.91350 1.43891 1.74043 1.02519 1.07923 1.18974 1.39733 0.82200 0.97653 0.93011 1.25351 0.96907 1.00330 0.98154 1.70033 1.36951 1.37083 1.10789 0.85588 0.77352 0.82351 0.77227 1.20373 1.21510 1.22170 1.19898 0.85368 0.98623 0.87420 1.31630 0.99805 0.83618 0.87174 1.71936 1.03988 1.25027 1.21845 1.24291 0.97871 0.93368 0.91849 1.17653 0.91123 0.95329 0.99137 1.21252 0.97085 0.92191 0.98206 1.21231 0.92949 1.01052 0.97227 1.21231 0.91088 0.94534 0.98193 1.98388 1.39623 1.69511 1.95107 1.21164 0.97606 0.93291 1.00420 1.21210 0.93093 0.99745 0.95911 1.74759 1.01012 1.13407 1.22519 1.85254 1.29090 1.46162 1.38959 0.93073 0.95738 0.89903 0.93764 0.94180 0.90010 0.91364 0.93790 0.88038 0.86613 0.83746 0.81836 0.81981 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 11.01 113.37 1.25 2.31 16 2 O -0.39 -17.58 10.13 -148.98 -1.51 -19.09 16 3 C 0.05 1.90 6.28 71.98 0.45 2.35 16 4 C 0.14 5.89 5.78 86.38 0.50 6.39 16 5 N -0.57 -25.44 2.42 -706.34 -1.71 -27.15 16 6 C -0.26 -13.21 8.93 84.03 0.75 -12.46 16 7 H 0.05 2.77 7.93 -2.91 -0.02 2.74 16 8 C -0.01 -0.49 4.96 84.86 0.42 -0.07 16 9 N -0.91 -49.55 11.31 21.65 0.24 -49.31 16 10 Si 0.95 44.83 29.61 68.60 2.03 46.86 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 13 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 14 C 0.22 7.88 6.33 85.64 0.54 8.42 16 15 C 0.20 7.41 7.69 88.36 0.68 8.09 16 16 N -0.49 -17.39 9.95 -302.51 -3.01 -20.40 16 17 C 0.20 6.72 7.80 137.28 1.07 7.79 16 18 C -0.03 -0.84 5.88 -20.04 -0.12 -0.95 16 19 C -0.07 -1.53 9.70 22.48 0.22 -1.32 16 20 C -0.11 -1.90 9.81 22.26 0.22 -1.68 16 21 C -0.02 -0.41 6.32 22.37 0.14 -0.26 16 22 Cl -0.06 -0.85 28.95 -2.72 -0.08 -0.93 16 23 C -0.11 -1.92 9.81 22.26 0.22 -1.71 16 24 C -0.08 -1.84 9.69 22.48 0.22 -1.62 16 25 N -0.40 -15.05 11.86 -59.14 -0.70 -15.75 16 26 O 0.06 2.32 11.29 74.68 0.84 3.16 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 29 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.04 1.59 6.34 -2.39 -0.02 1.58 16 32 H 0.08 4.17 5.31 -2.38 -0.01 4.16 16 33 H 0.07 2.60 7.88 -2.39 -0.02 2.58 16 34 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 35 H 0.10 3.46 8.04 -2.39 -0.02 3.44 16 36 H 0.12 3.56 7.88 -2.39 -0.02 3.54 16 37 H 0.14 3.28 7.88 -2.91 -0.02 3.25 16 38 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 39 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.14 3.19 7.87 -2.91 -0.02 3.16 16 Total: -1.00 -61.89 362.97 3.74 -58.15 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.07 Total: 9.16 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 6.56 Total: 15.28 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -5.18 Total: -112.61 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.67 Total: -15.92 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -61.89 3.74 -58.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459544822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.168 kcal (2) G-P(sol) polarization free energy of solvation -61.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds