Wall clock time and date at job start Tue Mar 31 2020 20:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40060 * 125.98027 * 2 1 4 4 C 1.31261 * 108.29652 * 179.97438 * 3 2 1 5 5 N 1.40013 * 125.93370 * 179.73715 * 4 3 2 6 6 C 1.34775 * 120.00171 * 180.02562 * 5 4 3 7 7 O 1.21608 * 119.99623 * 359.97438 * 6 5 4 8 8 C 1.47595 * 120.00284 * 179.97438 * 6 5 4 9 9 C 1.40035 * 119.89329 * 359.71917 * 8 6 5 10 10 C 1.36300 * 120.10128 * 179.75946 * 9 8 6 11 11 C 1.40902 * 119.89398 * 0.51864 * 10 9 8 12 12 C 1.41086 * 120.10058 * 179.71794 * 11 10 9 13 13 H 1.08006 * 119.99912 * 207.67764 * 12 11 10 14 14 C 1.40229 * 120.00548 * 27.67994 * 12 11 10 15 15 N 1.30650 * 119.99475 * 12.48256 * 14 12 11 16 16 Si 1.86800 * 120.00336 * 192.48417 * 14 12 11 17 17 H 1.48497 * 109.47126 * 89.99967 * 16 14 12 18 18 H 1.48506 * 109.47019 * 210.00078 * 16 14 12 19 19 H 1.48506 * 109.46993 * 329.99851 * 16 14 12 20 20 C 1.40902 * 119.79645 * 359.73738 * 11 10 9 21 21 C 1.36298 * 119.89084 * 0.02562 * 20 11 10 22 22 C 1.40371 * 108.12814 * 359.97438 * 4 3 2 23 23 C 1.35188 * 125.97165 * 179.97438 * 2 1 3 24 24 O 1.35746 * 126.12909 * 0.02618 * 23 2 1 25 25 C 1.42902 * 116.99744 * 182.48757 * 24 23 2 26 26 F 1.39898 * 109.46700 * 298.11939 * 25 24 23 27 27 F 1.39892 * 109.47403 * 58.11922 * 25 24 23 28 28 H 1.09002 * 109.47521 * 85.30033 * 1 2 3 29 29 H 1.08995 * 109.47902 * 205.30503 * 1 2 3 30 30 H 1.09003 * 109.46755 * 325.30436 * 1 2 3 31 31 H 0.97004 * 120.00142 * 0.02562 * 5 4 3 32 32 H 1.07999 * 119.95059 * 0.02562 * 9 8 6 33 33 H 1.08006 * 120.05777 * 180.23840 * 10 9 8 34 34 H 0.96997 * 119.99998 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.04963 * 179.97438 * 20 11 10 36 36 H 1.08004 * 119.94726 * 179.97438 * 21 20 11 37 37 H 1.07999 * 126.10104 * 179.97438 * 22 4 3 38 38 H 1.09000 * 109.47021 * 178.12240 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2878 1.1334 0.0000 4 6 3.5384 0.7347 0.0006 5 7 4.6656 1.5652 -0.0045 6 6 5.9005 1.0253 -0.0037 7 8 6.0356 -0.1833 0.0017 8 6 7.0887 1.9007 -0.0096 9 6 6.9305 3.2921 -0.0218 10 6 8.0249 4.1045 -0.0223 11 6 9.3169 3.5423 -0.0216 12 6 10.4527 4.3792 -0.0281 13 1 11.3780 4.0304 -0.4623 14 6 10.3803 5.6640 0.5292 15 7 9.3544 5.9999 1.2652 16 14 11.7506 6.8951 0.2193 17 1 11.4445 7.6789 -1.0043 18 1 11.8624 7.8140 1.3806 19 1 13.0342 6.1713 0.0354 20 6 9.4710 2.1418 -0.0147 21 6 8.3708 1.3374 -0.0093 22 6 3.5493 -0.6690 0.0015 23 6 2.2590 -1.0941 0.0005 24 8 1.8418 -2.3859 0.0006 25 6 2.8529 -3.3941 0.0564 26 9 3.6698 -3.2983 -1.0753 27 9 3.6276 -3.2145 1.2073 28 1 -0.3634 0.0842 -1.0242 29 1 -0.3635 -0.9290 0.4392 30 1 -0.3633 0.8450 0.5850 31 1 4.5578 2.5292 -0.0084 32 1 5.9398 3.7220 -0.0265 33 1 7.9020 5.1776 -0.0279 34 1 9.3041 6.8886 1.6504 35 1 10.4594 1.7065 -0.0145 36 1 8.4879 0.2637 -0.0045 37 1 4.4268 -1.2986 0.0018 38 1 2.3840 -4.3777 0.0838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490952149.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:50 Heat of formation + Delta-G solvation = -69.750335 kcal Electronic energy + Delta-G solvation = -28025.879292 eV Core-core repulsion = 23506.335774 eV Total energy + Delta-G solvation = -4519.543519 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.37448 -47.44554 -41.43701 -39.30045 -38.24040 -37.18894 -34.60423 -33.92195 -32.33379 -30.18149 -29.58957 -29.45923 -26.86756 -26.34232 -25.51673 -22.71125 -21.55246 -21.24359 -20.69665 -19.66835 -18.92949 -18.08756 -18.00292 -17.56567 -16.71809 -16.56602 -15.98093 -15.77715 -15.44827 -14.64217 -14.38314 -14.25943 -14.15474 -14.03844 -13.88077 -13.82688 -13.62435 -13.26464 -12.91167 -12.82694 -12.61644 -12.57629 -12.25186 -12.13281 -11.94024 -11.46230 -11.31576 -10.99452 -10.72388 -10.65754 -10.34778 -10.05729 -9.59425 -9.46244 -9.06586 -8.46490 -8.12462 -7.77752 -7.56446 -7.03945 -4.66904 1.57937 1.73326 2.11526 2.67169 2.80449 2.93481 2.96832 2.98644 3.01908 3.24113 3.65866 3.72105 3.87436 4.06580 4.42189 4.53234 4.59734 5.00204 5.03892 5.26718 5.38766 5.50391 5.69253 5.76159 5.98670 6.11414 6.25731 6.39558 6.72693 6.78973 6.95262 6.97446 7.06434 7.12868 7.34628 7.42529 7.64061 7.77259 7.81039 8.01974 8.16211 8.35375 8.58138 8.68986 8.84247 9.87194 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.023519 B = 0.002403 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.224371 B =11650.464568 C =12590.368891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.366 5.366 3 N -0.319 5.319 4 C 0.340 3.660 5 N -0.641 5.641 6 C 0.579 3.421 7 O -0.544 6.544 8 C -0.281 4.281 9 C -0.063 4.063 10 C -0.172 4.172 11 C 0.130 3.870 12 C -0.439 4.439 13 H 0.086 0.914 14 C 0.071 3.929 15 N -0.774 5.774 16 Si 0.917 3.083 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.235 4.235 21 C -0.018 4.018 22 C -0.312 4.312 23 C 0.263 3.737 24 O -0.322 6.322 25 C 0.429 3.571 26 F -0.190 7.190 27 F -0.189 7.189 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.415 0.585 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.287 0.713 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.183 0.817 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.664 -10.615 -1.391 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.157 5.157 3 N -0.154 5.154 4 C 0.085 3.915 5 N -0.291 5.291 6 C 0.375 3.625 7 O -0.423 6.423 8 C -0.286 4.286 9 C -0.083 4.083 10 C -0.191 4.191 11 C 0.127 3.873 12 C -0.467 4.467 13 H 0.104 0.896 14 C -0.150 4.150 15 N -0.398 5.398 16 Si 0.741 3.259 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.255 4.255 21 C -0.037 4.037 22 C -0.343 4.343 23 C 0.094 3.906 24 O -0.235 6.235 25 C 0.338 3.662 26 F -0.171 7.171 27 F -0.171 7.171 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.252 0.748 32 H 0.109 0.891 33 H 0.142 0.858 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.200 0.800 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -15.634 -10.413 -1.236 18.825 hybrid contribution 1.064 0.490 0.025 1.172 sum -14.570 -9.924 -1.211 17.670 Atomic orbital electron populations 1.21794 0.73690 1.04273 1.03388 1.47901 1.06089 1.00241 1.61435 1.77602 0.99312 1.03394 1.35051 1.18860 0.87052 0.90088 0.95533 1.42950 1.02603 1.09726 1.73792 1.18754 0.81698 0.88094 0.73976 1.90579 1.85738 1.15176 1.50784 1.18681 0.91002 0.92333 1.26579 1.20513 0.97387 0.92210 0.98151 1.21033 0.91593 0.99631 1.06850 1.17837 0.93131 0.91335 0.85019 1.19889 0.98128 0.97258 1.31385 0.89619 1.26117 0.97154 0.99042 0.92648 1.69714 1.28274 1.21001 1.20791 0.86145 0.81084 0.79607 0.79070 1.18942 1.19969 1.18278 1.20753 0.96744 0.93695 1.14305 1.20351 0.91204 0.98219 0.93915 1.21742 0.95413 0.95150 1.21989 1.18675 0.89975 0.80322 1.01591 1.86259 1.36088 1.11964 1.89171 1.23345 0.78268 0.92051 0.72527 1.93158 1.74918 1.96603 1.52468 1.93159 1.77164 1.95972 1.50817 0.90894 0.89459 0.89229 0.74781 0.89116 0.85826 0.90164 0.88135 0.87804 0.79992 0.79650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.97 11.44 59.84 0.68 1.65 16 2 N -0.37 -5.29 4.02 -68.30 -0.27 -5.56 16 3 N -0.32 -5.48 12.59 31.41 0.40 -5.08 16 4 C 0.34 6.40 8.10 -154.51 -1.25 5.15 16 5 N -0.64 -12.13 5.39 -12.08 -0.07 -12.19 16 6 C 0.58 12.48 7.73 -12.44 -0.10 12.39 16 7 O -0.54 -12.69 13.44 5.27 0.07 -12.62 16 8 C -0.28 -6.32 5.89 -104.73 -0.62 -6.94 16 9 C -0.06 -1.39 9.47 -39.61 -0.38 -1.76 16 10 C -0.17 -4.13 8.61 -39.27 -0.34 -4.47 16 11 C 0.13 3.24 5.56 -106.80 -0.59 2.65 16 12 C -0.44 -10.69 9.05 -37.75 -0.34 -11.03 16 13 H 0.09 1.99 7.88 -52.48 -0.41 1.57 16 14 C 0.07 1.63 5.23 -17.31 -0.09 1.54 16 15 N -0.77 -18.31 10.84 55.56 0.60 -17.71 16 16 Si 0.92 17.08 29.58 -169.99 -5.03 12.05 16 17 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 18 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 19 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 20 C -0.24 -5.55 9.73 -39.27 -0.38 -5.93 16 21 C -0.02 -0.40 9.52 -39.61 -0.38 -0.78 16 22 C -0.31 -5.74 7.83 -39.64 -0.31 -6.05 16 23 C 0.26 4.02 7.45 -16.93 -0.13 3.89 16 24 O -0.32 -3.73 10.34 -18.95 -0.20 -3.93 16 25 C 0.43 4.10 5.99 101.05 0.61 4.71 16 26 F -0.19 -2.38 16.15 2.25 0.04 -2.34 16 27 F -0.19 -2.39 16.05 2.25 0.04 -2.35 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.58 8.04 -51.93 -0.42 0.17 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.41 6.95 6.82 -40.82 -0.28 6.67 16 32 H 0.09 1.69 6.37 -52.49 -0.33 1.35 16 33 H 0.12 3.02 6.18 -52.48 -0.32 2.69 16 34 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 35 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.10 2.28 7.63 -52.48 -0.40 1.88 16 37 H 0.18 3.68 4.48 -52.49 -0.23 3.44 16 38 H 0.19 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 339.50 15.07 5.12 5.12 Total: -1.00 -31.07 339.50 -6.14 -37.22 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -3.23 Total: 12.39 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -3.61 Total: -4.99 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.66 Total: -40.54 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.13 Total: -16.54 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.07 Total: -4.70 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.07 -6.14 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490952149.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.533 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds