Wall clock time and date at job start Tue Mar 31 2020 19:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00189 * 2 1 4 4 N 1.46500 * 109.47416 * 125.00400 * 3 2 1 5 5 C 1.46502 * 119.99993 * 270.00268 * 4 3 2 6 6 C 1.50696 * 109.47365 * 269.99961 * 5 4 3 7 7 H 1.08000 * 119.99798 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00353 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00057 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00341 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47589 * 89.99840 * 10 8 6 12 12 H 1.48506 * 109.47521 * 210.00141 * 10 8 6 13 13 H 1.48506 * 109.47130 * 330.00003 * 10 8 6 14 14 C 1.34772 * 120.00235 * 90.00177 * 4 3 2 15 15 O 1.21583 * 120.00214 * 180.02562 * 14 4 3 16 16 N 1.34780 * 119.99719 * 0.02562 * 14 4 3 17 17 C 1.40033 * 119.99938 * 185.30078 * 16 14 4 18 18 C 1.39009 * 119.98078 * 213.25753 * 17 16 14 19 19 C 1.38166 * 120.24411 * 180.02562 * 18 17 16 20 20 C 1.38173 * 120.20961 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 120.02083 * 179.97438 * 20 19 18 22 22 C 1.39692 * 119.95995 * 359.97438 * 20 19 18 23 23 C 1.47786 * 120.12395 * 179.97438 * 22 20 19 24 24 N 1.34777 * 120.00065 * 179.97438 * 23 22 20 25 25 O 1.21565 * 119.99939 * 359.97438 * 23 22 20 26 26 C 1.38544 * 119.97773 * 33.49260 * 17 16 14 27 27 H 1.07994 * 120.00141 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.99776 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00449 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.46845 * 5.00184 * 3 2 1 31 31 H 1.09000 * 109.47561 * 245.00680 * 3 2 1 32 32 H 1.09001 * 109.46860 * 29.99677 * 5 4 3 33 33 H 1.09002 * 109.47213 * 149.99383 * 5 4 3 34 34 H 0.97000 * 120.00393 * 180.02562 * 9 8 6 35 35 H 0.96997 * 120.00201 * 5.30040 * 16 14 4 36 36 H 1.07992 * 119.87649 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.89283 * 179.97438 * 19 18 17 38 38 H 0.97004 * 120.00200 * 359.97438 * 24 23 22 39 39 H 0.97006 * 119.99948 * 179.73020 * 24 23 22 40 40 H 1.07999 * 120.10357 * 359.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1313 5 6 2.5590 1.8648 2.4248 6 6 2.8443 3.3435 2.4805 7 1 3.3040 3.8368 1.6368 8 6 2.5186 4.0665 3.6082 9 7 1.9583 3.4659 4.6354 10 14 2.8729 5.8993 3.6775 11 1 1.7007 6.6501 3.1602 12 1 3.1363 6.2999 5.0830 13 1 4.0635 6.2051 2.8442 14 6 4.2497 0.8662 0.9823 15 8 5.0217 0.8880 1.9213 16 7 4.6499 0.3763 -0.2079 17 6 5.9159 -0.2088 -0.3343 18 6 6.6198 -0.0905 -1.5271 19 6 7.8690 -0.6661 -1.6579 20 6 8.4274 -1.3629 -0.6035 21 17 9.9971 -2.0847 -0.7735 22 6 7.7280 -1.4862 0.5995 23 6 8.3215 -2.2312 1.7294 24 7 7.6448 -2.3482 2.8891 25 8 9.4201 -2.7385 1.6129 26 6 6.4639 -0.9094 0.7280 27 1 -0.5400 0.9352 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.4889 1.6965 2.5459 33 1 3.0991 1.3601 3.2259 34 1 1.7288 3.9747 5.4287 35 1 4.0610 0.4290 -0.9768 36 1 6.1883 0.4526 -2.3548 37 1 8.4108 -0.5710 -2.5874 38 1 6.7683 -1.9431 2.9822 39 1 8.0327 -2.8406 3.6295 40 1 5.9164 -1.0048 1.6540 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493905966.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:07 Heat of formation + Delta-G solvation = -6.087957 kcal Electronic energy + Delta-G solvation = -26371.954173 eV Core-core repulsion = 22406.967942 eV Total energy + Delta-G solvation = -3964.986231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.71014 -39.61598 -38.16809 -36.47123 -35.87499 -34.48202 -33.77550 -33.24371 -32.22481 -31.13982 -29.49186 -27.47699 -25.65514 -24.40999 -23.57752 -22.24894 -20.73641 -20.20081 -19.53070 -18.54959 -17.56310 -16.81292 -16.71938 -16.55358 -16.23877 -15.32452 -15.16172 -14.84128 -14.79286 -14.54845 -14.40733 -14.09568 -13.60277 -13.36970 -13.12102 -12.92472 -12.47799 -12.34786 -12.05423 -11.89036 -11.63146 -11.38295 -11.20447 -11.18968 -10.98043 -10.69063 -10.26972 -10.09078 -9.75260 -9.66014 -9.61344 -9.55192 -9.34745 -9.16990 -8.51405 -8.16556 -7.78872 -6.12744 -4.17811 0.62713 1.09433 2.18253 2.27560 2.75449 2.98569 3.24722 3.32457 3.36464 3.45778 3.52159 3.81424 4.21772 4.39978 4.58833 4.65814 5.00464 5.03352 5.12329 5.21776 5.22590 5.24291 5.37079 5.60027 5.70204 5.84731 5.97342 6.00915 6.04354 6.23892 6.57505 6.65536 6.76177 6.79296 6.84424 7.21187 7.31006 7.33987 7.49289 7.83868 8.12281 8.24098 8.35332 8.81292 9.01167 9.47884 10.95139 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012356 B = 0.003173 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.543616 B = 8820.974440 C = 9693.235294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.174 4.174 3 C 0.136 3.864 4 N -0.599 5.599 5 C 0.262 3.738 6 C -0.530 4.530 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.698 3.302 15 O -0.566 6.566 16 N -0.695 5.695 17 C 0.182 3.818 18 C -0.119 4.119 19 C -0.098 4.098 20 C -0.012 4.012 21 Cl -0.041 7.041 22 C -0.114 4.114 23 C 0.562 3.438 24 N -0.848 5.848 25 O -0.525 6.525 26 C -0.079 4.079 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.405 0.595 39 H 0.405 0.595 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 -10.617 -13.423 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.193 4.193 3 C 0.012 3.988 4 N -0.332 5.332 5 C 0.143 3.857 6 C -0.569 4.569 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.400 3.600 15 O -0.442 6.442 16 N -0.345 5.345 17 C 0.085 3.915 18 C -0.140 4.140 19 C -0.117 4.117 20 C -0.041 4.041 21 Cl -0.012 7.012 22 C -0.118 4.118 23 C 0.347 3.653 24 N -0.412 5.412 25 O -0.402 6.402 26 C -0.101 4.101 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.242 0.758 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.236 0.764 39 H 0.236 0.764 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.747 -10.816 -12.705 17.347 hybrid contribution -0.514 1.170 0.080 1.280 sum 4.234 -9.646 -12.625 16.443 Atomic orbital electron populations 1.23847 0.95823 1.01924 0.99760 1.23408 0.96509 0.98816 1.00606 1.20558 0.93233 0.95894 0.89119 1.47628 1.08476 1.62766 1.14329 1.19272 0.95360 0.93680 0.77415 1.21425 1.40776 0.93311 1.01368 0.92457 1.24905 0.94959 0.98770 0.95274 1.69919 1.41838 1.36222 1.05221 0.86509 0.78616 0.84929 0.77441 1.20632 1.21040 1.19901 1.15948 0.83298 0.78609 0.82192 1.90907 1.52538 1.61717 1.39068 1.43077 1.15820 1.62650 1.12955 1.17439 0.86107 0.93505 0.94473 1.21005 0.94096 1.01105 0.97835 1.20765 0.95177 0.97607 0.98193 1.20867 0.89094 0.99776 0.94359 1.98393 1.23883 1.81458 1.97462 1.19563 0.95400 1.02744 0.94133 1.18048 0.84816 0.79608 0.82781 1.43792 1.23498 1.58507 1.15414 1.90887 1.19367 1.47502 1.82407 1.21372 0.94276 0.94501 0.99954 0.88165 0.88658 0.87733 0.88871 0.91512 0.94617 0.93646 0.92634 0.75754 0.84408 0.84092 0.76413 0.76444 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 14.32 29.02 0.42 -1.55 16 2 C -0.17 -2.11 9.85 -36.03 -0.35 -2.46 16 3 C 0.14 1.90 5.66 -5.20 -0.03 1.87 16 4 N -0.60 -11.27 2.44 -182.18 -0.44 -11.71 16 5 C 0.26 6.31 5.16 -5.19 -0.03 6.28 16 6 C -0.53 -14.18 9.39 -34.44 -0.32 -14.51 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 10 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.70 12.97 8.01 -86.92 -0.70 12.27 16 15 O -0.57 -12.71 13.62 5.29 0.07 -12.64 16 16 N -0.70 -9.43 5.22 -14.25 -0.07 -9.50 16 17 C 0.18 2.40 6.27 -83.71 -0.53 1.88 16 18 C -0.12 -1.25 9.95 -39.32 -0.39 -1.64 16 19 C -0.10 -1.04 9.81 -39.63 -0.39 -1.43 16 20 C -0.01 -0.16 6.35 -39.06 -0.25 -0.41 16 21 Cl -0.04 -0.56 26.01 -51.86 -1.35 -1.91 16 22 C -0.11 -1.60 5.87 -104.96 -0.62 -2.22 16 23 C 0.56 8.14 8.04 -12.36 -0.10 8.04 16 24 N -0.85 -9.69 8.82 30.52 0.27 -9.42 16 25 O -0.52 -8.82 14.79 5.31 0.08 -8.74 16 26 C -0.08 -1.13 8.14 -38.98 -0.32 -1.44 16 27 H 0.10 1.11 7.84 -52.49 -0.41 0.70 16 28 H 0.10 0.92 8.06 -52.49 -0.42 0.49 16 29 H 0.10 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.09 1.38 7.72 -51.93 -0.40 0.98 16 31 H 0.07 0.72 6.29 -51.93 -0.33 0.40 16 32 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.40 4.19 6.51 -40.82 -0.27 3.92 16 36 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.41 4.37 6.86 -40.82 -0.28 4.09 16 39 H 0.40 3.84 8.93 -40.82 -0.36 3.48 16 40 H 0.15 2.25 4.76 -52.49 -0.25 2.00 16 LS Contribution 360.08 15.07 5.43 5.43 Total: -1.00 -33.39 360.08 -8.34 -41.74 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.34 Total: 9.00 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -3.70 Total: 6.31 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.49 Total: -55.31 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: 0.15 Total: -21.38 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.35 Total: -1.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.39 -8.34 -41.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493905966.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.650 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds