Wall clock time and date at job start Tue Mar 31 2020 19:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00189 * 2 1 4 4 N 1.46500 * 109.47416 * 125.00400 * 3 2 1 5 5 C 1.46502 * 119.99993 * 270.00268 * 4 3 2 6 6 C 1.50696 * 109.47365 * 269.99961 * 5 4 3 7 7 H 1.08000 * 119.99798 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00353 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00057 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00341 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47589 * 89.99840 * 10 8 6 12 12 H 1.48506 * 109.47521 * 210.00141 * 10 8 6 13 13 H 1.48506 * 109.47130 * 330.00003 * 10 8 6 14 14 C 1.34772 * 120.00235 * 90.00177 * 4 3 2 15 15 O 1.21583 * 120.00214 * 180.02562 * 14 4 3 16 16 N 1.34780 * 119.99719 * 0.02562 * 14 4 3 17 17 C 1.40033 * 119.99938 * 185.30078 * 16 14 4 18 18 C 1.39009 * 119.98078 * 213.25753 * 17 16 14 19 19 C 1.38166 * 120.24411 * 180.02562 * 18 17 16 20 20 C 1.38173 * 120.20961 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 120.02083 * 179.97438 * 20 19 18 22 22 C 1.39692 * 119.95995 * 359.97438 * 20 19 18 23 23 C 1.47786 * 120.12395 * 179.97438 * 22 20 19 24 24 N 1.34777 * 120.00065 * 179.97438 * 23 22 20 25 25 O 1.21565 * 119.99939 * 359.97438 * 23 22 20 26 26 C 1.38544 * 119.97773 * 33.49260 * 17 16 14 27 27 H 1.07994 * 120.00141 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.99776 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00449 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.46845 * 5.00184 * 3 2 1 31 31 H 1.09000 * 109.47561 * 245.00680 * 3 2 1 32 32 H 1.09001 * 109.46860 * 29.99677 * 5 4 3 33 33 H 1.09002 * 109.47213 * 149.99383 * 5 4 3 34 34 H 0.97000 * 120.00393 * 180.02562 * 9 8 6 35 35 H 0.96997 * 120.00201 * 5.30040 * 16 14 4 36 36 H 1.07992 * 119.87649 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.89283 * 179.97438 * 19 18 17 38 38 H 0.97004 * 120.00200 * 359.97438 * 24 23 22 39 39 H 0.97006 * 119.99948 * 179.73020 * 24 23 22 40 40 H 1.07999 * 120.10357 * 359.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1313 5 6 2.5590 1.8648 2.4248 6 6 2.8443 3.3435 2.4805 7 1 3.3040 3.8368 1.6368 8 6 2.5186 4.0665 3.6082 9 7 1.9583 3.4659 4.6354 10 14 2.8729 5.8993 3.6775 11 1 1.7007 6.6501 3.1602 12 1 3.1363 6.2999 5.0830 13 1 4.0635 6.2051 2.8442 14 6 4.2497 0.8662 0.9823 15 8 5.0217 0.8880 1.9213 16 7 4.6499 0.3763 -0.2079 17 6 5.9159 -0.2088 -0.3343 18 6 6.6198 -0.0905 -1.5271 19 6 7.8690 -0.6661 -1.6579 20 6 8.4274 -1.3629 -0.6035 21 17 9.9971 -2.0847 -0.7735 22 6 7.7280 -1.4862 0.5995 23 6 8.3215 -2.2312 1.7294 24 7 7.6448 -2.3482 2.8891 25 8 9.4201 -2.7385 1.6129 26 6 6.4639 -0.9094 0.7280 27 1 -0.5400 0.9352 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.4889 1.6965 2.5459 33 1 3.0991 1.3601 3.2259 34 1 1.7288 3.9747 5.4287 35 1 4.0610 0.4290 -0.9768 36 1 6.1883 0.4526 -2.3548 37 1 8.4108 -0.5710 -2.5874 38 1 6.7683 -1.9431 2.9822 39 1 8.0327 -2.8406 3.6295 40 1 5.9164 -1.0048 1.6540 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493905966.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:06 Heat of formation + Delta-G solvation = -28.944173 kcal Electronic energy + Delta-G solvation = -26372.945292 eV Core-core repulsion = 22406.967942 eV Total energy + Delta-G solvation = -3965.977351 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90466 -40.82501 -39.29329 -37.56806 -37.16433 -35.78177 -34.94484 -34.80168 -33.70240 -32.10728 -30.73922 -29.11639 -26.94713 -25.44039 -25.21245 -23.51369 -21.84158 -21.33707 -20.71220 -19.66045 -18.86042 -18.52589 -17.88773 -17.85513 -17.27199 -16.70772 -16.55608 -15.98369 -15.96517 -15.86649 -15.72187 -15.34095 -14.70999 -14.55508 -14.40113 -14.13537 -14.09078 -13.48358 -13.26394 -13.08866 -13.04892 -12.85370 -12.62783 -12.54779 -12.26654 -12.22806 -12.19969 -11.67004 -11.26353 -11.03674 -10.72450 -10.69076 -10.60879 -10.32077 -10.14913 -9.58572 -9.03681 -8.19384 -6.33034 -0.37190 0.10104 1.17026 1.27840 1.38650 1.41563 1.50919 1.69049 1.78942 2.17565 2.40604 2.48023 2.71657 3.00071 3.11502 3.63454 3.71702 4.02864 4.09422 4.13673 4.23641 4.29928 4.38590 4.62970 4.73453 4.81672 4.93286 5.04529 5.06858 5.14238 5.24557 5.28010 5.51873 5.72140 5.75852 5.76063 5.82760 5.92256 6.05740 6.09122 6.27301 6.75977 7.00988 7.19962 7.33714 7.59740 8.86909 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012356 B = 0.003173 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.543616 B = 8820.974440 C = 9693.235294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.185 4.185 3 C 0.132 3.868 4 N -0.604 5.604 5 C 0.281 3.719 6 C -0.541 4.541 7 H 0.053 0.947 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.961 3.039 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.275 1.275 14 C 0.696 3.304 15 O -0.613 6.613 16 N -0.672 5.672 17 C 0.161 3.839 18 C -0.095 4.095 19 C -0.088 4.088 20 C -0.022 4.022 21 Cl -0.048 7.048 22 C -0.131 4.131 23 C 0.556 3.444 24 N -0.835 5.835 25 O -0.555 6.555 26 C -0.090 4.090 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.026 0.974 33 H 0.004 0.996 34 H 0.266 0.734 35 H 0.423 0.577 36 H 0.179 0.821 37 H 0.176 0.824 38 H 0.409 0.591 39 H 0.413 0.587 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 -9.909 -16.244 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.204 4.204 3 C 0.010 3.990 4 N -0.337 5.337 5 C 0.160 3.840 6 C -0.579 4.579 7 H 0.071 0.929 8 C -0.187 4.187 9 N -0.566 5.566 10 Si 0.786 3.214 11 H -0.190 1.190 12 H -0.210 1.210 13 H -0.200 1.200 14 C 0.397 3.603 15 O -0.493 6.493 16 N -0.323 5.323 17 C 0.065 3.935 18 C -0.116 4.116 19 C -0.107 4.107 20 C -0.051 4.051 21 Cl -0.019 7.019 22 C -0.135 4.135 23 C 0.341 3.659 24 N -0.399 5.399 25 O -0.434 6.434 26 C -0.111 4.111 27 H 0.118 0.882 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.044 0.956 33 H 0.022 0.978 34 H 0.075 0.925 35 H 0.264 0.736 36 H 0.197 0.803 37 H 0.193 0.807 38 H 0.240 0.760 39 H 0.246 0.754 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.374 -10.131 -15.589 19.099 hybrid contribution -0.427 0.893 0.919 1.351 sum 3.946 -9.238 -14.669 17.780 Atomic orbital electron populations 1.24055 0.95642 1.02864 0.97915 1.23305 0.96777 0.98141 1.02194 1.20811 0.92866 0.96678 0.88635 1.47409 1.09596 1.62741 1.13953 1.18646 0.93959 0.92285 0.79155 1.21721 1.40325 0.94639 1.01251 0.92866 1.25734 0.94814 1.03159 0.94991 1.70031 1.42864 1.37875 1.05783 0.85519 0.78748 0.79870 0.77280 1.18960 1.20987 1.19975 1.16072 0.82715 0.78435 0.83029 1.90878 1.53799 1.63476 1.41101 1.42643 1.16331 1.61670 1.11703 1.17672 0.86219 0.94165 0.95464 1.21382 0.93272 0.99507 0.97442 1.21163 0.95129 0.95889 0.98528 1.21156 0.88906 1.00175 0.94844 1.98390 1.24378 1.81684 1.97422 1.19572 0.95683 1.03620 0.94637 1.18282 0.84623 0.79453 0.83517 1.43712 1.23354 1.57814 1.15052 1.90862 1.20527 1.48987 1.83039 1.21273 0.94425 0.95426 1.00013 0.88215 0.86782 0.86920 0.89898 0.87900 0.95609 0.97800 0.92506 0.73604 0.80344 0.80707 0.75986 0.75428 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 14.32 67.78 0.97 -2.44 16 2 C -0.18 -4.15 9.85 25.65 0.25 -3.90 16 3 C 0.13 3.49 5.66 85.63 0.48 3.97 16 4 N -0.60 -22.75 2.44 -848.57 -2.07 -24.82 16 5 C 0.28 13.99 5.16 85.63 0.44 14.43 16 6 C -0.54 -29.37 9.39 25.60 0.24 -29.13 16 7 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 8 C 0.01 0.68 5.46 84.65 0.46 1.14 16 9 N -0.93 -53.71 13.29 21.44 0.28 -53.43 16 10 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 11 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 C 0.70 25.79 8.01 179.05 1.43 27.22 16 15 O -0.61 -28.38 13.62 -3.98 -0.05 -28.44 16 16 N -0.67 -16.94 5.22 -317.25 -1.66 -18.60 16 17 C 0.16 3.94 6.27 38.09 0.24 4.18 16 18 C -0.10 -1.62 9.95 22.44 0.22 -1.40 16 19 C -0.09 -1.57 9.81 22.24 0.22 -1.35 16 20 C -0.02 -0.55 6.35 22.61 0.14 -0.40 16 21 Cl -0.05 -1.26 26.01 -2.72 -0.07 -1.33 16 22 C -0.13 -3.66 5.87 -20.08 -0.12 -3.78 16 23 C 0.56 16.44 8.04 86.77 0.70 17.14 16 24 N -0.83 -19.87 8.82 -175.64 -1.55 -21.41 16 25 O -0.55 -19.00 14.79 -3.92 -0.06 -19.06 16 26 C -0.09 -2.54 8.14 22.66 0.18 -2.35 16 27 H 0.10 2.04 7.84 -2.91 -0.02 2.02 16 28 H 0.11 1.91 8.06 -2.91 -0.02 1.88 16 29 H 0.11 2.36 8.06 -2.91 -0.02 2.34 16 30 H 0.08 2.36 7.72 -2.38 -0.02 2.35 16 31 H 0.10 1.91 6.29 -2.39 -0.02 1.89 16 32 H 0.03 1.32 8.07 -2.39 -0.02 1.30 16 33 H 0.00 0.22 7.42 -2.39 -0.02 0.21 16 34 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.42 7.33 6.51 -92.71 -0.60 6.73 16 36 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 38 H 0.41 9.39 6.86 -92.71 -0.64 8.75 16 39 H 0.41 8.16 8.93 -92.70 -0.83 7.33 16 40 H 0.13 4.20 4.76 -2.91 -0.01 4.19 16 Total: -1.00 -75.12 360.08 1.78 -73.34 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -0.94 Total: 25.00 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: 5.87 Total: 23.33 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -4.99 Total: -118.26 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -0.11 Total: -47.49 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.07 Total: -1.33 kcal Total: -75.12 1.78 -73.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493905966.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.391 kcal (2) G-P(sol) polarization free energy of solvation -75.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds