Wall clock time and date at job start Tue Mar 31 2020 19:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 113.28306 * 2 1 4 4 N 1.34770 * 120.00283 * 46.93334 * 3 2 1 5 5 O 1.21283 * 119.99889 * 226.93212 * 3 2 1 6 6 C 1.53502 * 114.20642 * 226.92807 * 2 1 3 7 7 N 1.47066 * 87.98810 * 220.15011 * 6 2 1 8 8 C 1.34773 * 136.05878 * 207.08963 * 7 6 2 9 9 O 1.21579 * 119.99728 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99918 * 179.72524 * 8 7 6 11 11 C 1.39275 * 119.99838 * 174.58806 * 10 8 7 12 12 C 1.39461 * 119.84267 * 335.10048 * 11 10 8 13 13 C 1.36377 * 120.18590 * 179.97438 * 12 11 10 14 14 C 1.40892 * 119.84414 * 0.02562 * 13 12 11 15 15 C 1.41151 * 120.15692 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00058 * 34.91086 * 15 14 13 17 17 C 1.39885 * 119.99884 * 214.91218 * 15 14 13 18 18 N 1.30883 * 120.00349 * 355.23158 * 17 15 14 19 19 Si 1.86804 * 119.99998 * 175.22926 * 17 15 14 20 20 H 1.48500 * 109.47078 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47277 * 119.99835 * 19 17 15 22 22 H 1.48504 * 109.47023 * 240.00389 * 19 17 15 23 23 C 1.40841 * 119.68514 * 359.97438 * 14 13 12 24 24 C 1.36479 * 119.81741 * 359.70118 * 23 14 13 25 25 Cl 1.73594 * 119.92616 * 180.29009 * 24 23 14 26 26 C 1.47068 * 87.88302 * 27.34025 * 7 6 2 27 27 H 1.08997 * 109.47491 * 193.06982 * 1 2 3 28 28 H 1.09003 * 109.46988 * 313.06709 * 1 2 3 29 29 H 1.09000 * 109.46758 * 73.06364 * 1 2 3 30 30 H 0.97001 * 120.00097 * 359.97438 * 4 3 2 31 31 H 0.97001 * 120.00148 * 180.02562 * 4 3 2 32 32 H 1.08995 * 113.46286 * 105.37042 * 6 2 1 33 33 H 1.08998 * 113.52134 * 334.94108 * 6 2 1 34 34 H 0.97000 * 120.00162 * 354.58963 * 10 8 7 35 35 H 1.08001 * 119.90681 * 0.02562 * 12 11 10 36 36 H 1.07993 * 120.07588 * 180.02562 * 13 12 11 37 37 H 0.96998 * 120.00164 * 180.02562 * 18 17 15 38 38 H 1.07995 * 120.09278 * 179.97438 * 23 14 13 39 39 H 1.09004 * 113.46431 * 87.44081 * 26 7 6 40 40 H 1.08998 * 113.47180 * 217.87467 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1257 1.3843 0.0000 4 7 1.6600 2.3183 0.8526 5 8 3.0242 1.6578 -0.7673 6 6 2.1594 -0.9561 -1.0227 7 7 3.1629 -1.3017 -0.0047 8 6 4.4370 -1.7408 -0.0078 9 8 5.0092 -1.9388 -1.0621 10 7 5.0786 -1.9557 1.1579 11 6 6.3539 -2.5155 1.1579 12 6 6.7618 -3.3128 0.0889 13 6 8.0092 -3.8640 0.0815 14 6 8.8869 -3.6269 1.1578 15 6 10.1793 -4.1946 1.1571 16 1 10.7192 -4.3072 0.2286 17 6 10.7606 -4.6115 2.3592 18 7 10.1471 -4.3907 3.4941 19 14 12.4126 -5.4834 2.3448 20 1 12.8930 -5.6105 0.9454 21 1 13.3937 -4.6983 3.1361 22 1 12.2640 -6.8353 2.9413 23 6 8.4687 -2.8208 2.2343 24 6 7.2199 -2.2704 2.2248 25 17 6.7043 -1.2702 3.5466 26 6 2.1619 -0.9632 1.0183 27 1 -0.3634 -1.0010 0.2324 28 1 -0.3633 0.7018 0.7508 29 1 -0.3633 0.2994 -0.9831 30 1 0.9411 2.0997 1.4661 31 1 2.0432 3.2095 0.8524 32 1 2.5790 -0.4480 -1.8909 33 1 1.5120 -1.7898 -1.2947 34 1 4.6521 -1.7204 1.9967 35 1 6.0883 -3.4935 -0.7358 36 1 8.3234 -4.4808 -0.7475 37 1 10.5505 -4.6794 4.3277 38 1 9.1360 -2.6351 3.0629 39 1 1.5146 -1.7986 1.2853 40 1 2.5837 -0.4612 1.8891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521622008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:05 Heat of formation + Delta-G solvation = -7.265385 kcal Electronic energy + Delta-G solvation = -26368.953500 eV Core-core repulsion = 22403.916213 eV Total energy + Delta-G solvation = -3965.037288 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36053 -39.50395 -38.09814 -37.07153 -35.49630 -34.37795 -34.11497 -33.00988 -31.66815 -29.40533 -29.03041 -26.92228 -26.32997 -24.78415 -23.81751 -21.79071 -20.86556 -19.85696 -19.24679 -17.96930 -17.52927 -17.31435 -16.83741 -16.54994 -15.81816 -15.34837 -15.19555 -14.72310 -14.42053 -14.20205 -14.03983 -13.63466 -13.24804 -13.09067 -12.91306 -12.77704 -12.59151 -12.38665 -12.24657 -11.91808 -11.65656 -11.36216 -11.06436 -10.93547 -10.79180 -10.47562 -10.33320 -10.17920 -10.06201 -9.96789 -9.91014 -9.49201 -9.26446 -8.86730 -8.67021 -7.50517 -6.89096 -6.66786 -4.39058 2.29847 2.45721 2.65413 2.89874 3.07553 3.09664 3.11351 3.15778 3.19614 3.64444 3.75177 3.96010 4.15834 4.43635 4.55206 4.62002 4.64068 5.03539 5.09691 5.20320 5.24390 5.44947 5.47501 5.52080 5.64210 5.78576 6.21474 6.48267 6.55126 6.69944 6.91597 7.00585 7.06611 7.18000 7.36892 7.41065 7.74068 7.76167 7.97574 8.00352 8.16043 8.38995 8.49707 8.80713 8.86216 9.02738 10.24469 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.024107 B = 0.002765 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.211839 B =10122.625996 C =10713.217174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.134 4.134 3 C 0.543 3.457 4 N -0.854 5.854 5 O -0.520 6.520 6 C 0.150 3.850 7 N -0.664 5.664 8 C 0.734 3.266 9 O -0.567 6.567 10 N -0.661 5.661 11 C 0.041 3.959 12 C -0.088 4.088 13 C -0.194 4.194 14 C 0.103 3.897 15 C -0.457 4.457 16 H 0.080 0.920 17 C 0.069 3.931 18 N -0.809 5.809 19 Si 0.917 3.083 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.131 4.131 24 C -0.029 4.029 25 Cl -0.123 7.123 26 C 0.118 3.882 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.400 0.600 31 H 0.403 0.597 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.394 0.606 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.279 0.721 38 H 0.145 0.855 39 H 0.097 0.903 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.511 7.926 0.911 22.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.138 4.138 3 C 0.326 3.674 4 N -0.418 5.418 5 O -0.393 6.393 6 C 0.026 3.974 7 N -0.405 5.405 8 C 0.438 3.562 9 O -0.443 6.443 10 N -0.306 5.306 11 C -0.053 4.053 12 C -0.109 4.109 13 C -0.215 4.215 14 C 0.099 3.901 15 C -0.487 4.487 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.436 5.436 19 Si 0.742 3.258 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.200 1.200 23 C -0.151 4.151 24 C -0.058 4.058 25 Cl -0.094 7.094 26 C -0.006 4.006 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.229 0.771 31 H 0.234 0.766 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.228 0.772 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.162 0.838 39 H 0.114 0.886 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.263 7.721 -0.093 20.752 hybrid contribution 0.144 0.064 1.207 1.217 sum -19.118 7.785 1.114 20.673 Atomic orbital electron populations 1.21651 0.90630 1.03468 1.03173 1.22448 0.97132 0.92929 1.01318 1.19640 0.82004 0.85667 0.80080 1.43783 1.41631 1.15310 1.41102 1.90828 1.28694 1.80524 1.39304 1.22656 0.86730 0.94689 0.93311 1.48473 1.09554 1.72236 1.10252 1.15118 0.78898 0.77685 0.84525 1.90885 1.64773 1.57967 1.30677 1.42001 1.16883 1.64904 1.06848 1.16778 0.84538 1.05298 0.98690 1.20558 0.97389 0.96034 0.96878 1.20936 0.93795 1.05188 1.01533 1.17600 0.93207 0.89116 0.90127 1.19505 0.99903 1.35164 0.94148 0.90145 1.25903 0.98786 0.95000 0.94945 1.69751 1.37454 1.37615 0.98759 0.86109 0.81066 0.79165 0.79451 1.18516 1.19949 1.19955 1.21192 0.93319 0.98239 1.02376 1.20355 0.95777 1.00332 0.89301 1.98239 1.91327 1.70212 1.49667 1.23007 0.89100 0.95739 0.92760 0.90621 0.91661 0.91078 0.77118 0.76554 0.89104 0.89143 0.77202 0.85568 0.87838 0.90990 0.83762 0.88550 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.50 9.23 37.16 0.34 -0.15 16 2 C -0.13 -1.08 1.42 -155.01 -0.22 -1.30 16 3 C 0.54 5.78 7.17 -10.99 -0.08 5.70 16 4 N -0.85 -5.23 8.75 31.22 0.27 -4.96 16 5 O -0.52 -8.56 16.82 5.56 0.09 -8.47 16 6 C 0.15 1.70 7.52 -8.51 -0.06 1.63 16 7 N -0.66 -9.66 3.57 -190.81 -0.68 -10.34 16 8 C 0.73 14.59 8.59 -86.92 -0.75 13.84 16 9 O -0.57 -13.53 14.25 5.30 0.08 -13.46 16 10 N -0.66 -13.08 5.16 -14.07 -0.07 -13.15 16 11 C 0.04 0.96 6.44 -83.52 -0.54 0.42 16 12 C -0.09 -2.16 8.63 -39.80 -0.34 -2.51 16 13 C -0.19 -4.90 9.74 -39.25 -0.38 -5.28 16 14 C 0.10 2.74 5.55 -106.80 -0.59 2.15 16 15 C -0.46 -12.04 9.02 -37.86 -0.34 -12.38 16 16 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 17 C 0.07 1.73 5.42 -17.34 -0.09 1.63 16 18 N -0.81 -20.76 10.59 55.54 0.59 -20.17 16 19 Si 0.92 18.86 29.56 -169.99 -5.03 13.83 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.13 -3.40 8.38 -39.23 -0.33 -3.73 16 24 C -0.03 -0.69 6.30 -39.71 -0.25 -0.94 16 25 Cl -0.12 -2.45 27.75 -51.86 -1.44 -3.89 16 26 C 0.12 1.06 7.46 -8.37 -0.06 1.00 16 27 H 0.07 0.20 7.90 -51.93 -0.41 -0.21 16 28 H 0.06 0.13 6.91 -51.93 -0.36 -0.23 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.40 1.07 7.63 -40.82 -0.31 0.76 16 31 H 0.40 2.32 8.93 -40.82 -0.36 1.96 16 32 H 0.09 1.26 7.52 -51.93 -0.39 0.87 16 33 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 34 H 0.39 6.76 7.46 -40.82 -0.30 6.45 16 35 H 0.13 3.08 5.76 -52.49 -0.30 2.78 16 36 H 0.10 2.44 8.06 -52.49 -0.42 2.02 16 37 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 38 H 0.14 3.90 6.13 -52.49 -0.32 3.58 16 39 H 0.10 0.60 7.94 -51.93 -0.41 0.19 16 40 H 0.08 0.66 8.12 -51.93 -0.42 0.23 16 LS Contribution 353.42 15.07 5.33 5.33 Total: -1.00 -35.02 353.42 -8.97 -44.00 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -4.41 Total: 11.21 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -3.70 Total: 0.07 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.11 Total: -48.63 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.17 Total: -21.92 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -1.44 Total: -3.89 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.02 -8.97 -44.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521622008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.732 kcal (2) G-P(sol) polarization free energy of solvation -35.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds