Wall clock time and date at job start Tue Mar 31 2020 19:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 113.28306 * 2 1 4 4 N 1.34770 * 120.00283 * 46.93334 * 3 2 1 5 5 O 1.21283 * 119.99889 * 226.93212 * 3 2 1 6 6 C 1.53502 * 114.20642 * 226.92807 * 2 1 3 7 7 N 1.47066 * 87.98810 * 220.15011 * 6 2 1 8 8 C 1.34773 * 136.05878 * 207.08963 * 7 6 2 9 9 O 1.21579 * 119.99728 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99918 * 179.72524 * 8 7 6 11 11 C 1.39275 * 119.99838 * 174.58806 * 10 8 7 12 12 C 1.39461 * 119.84267 * 335.10048 * 11 10 8 13 13 C 1.36377 * 120.18590 * 179.97438 * 12 11 10 14 14 C 1.40892 * 119.84414 * 0.02562 * 13 12 11 15 15 C 1.41151 * 120.15692 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00058 * 34.91086 * 15 14 13 17 17 C 1.39885 * 119.99884 * 214.91218 * 15 14 13 18 18 N 1.30883 * 120.00349 * 355.23158 * 17 15 14 19 19 Si 1.86804 * 119.99998 * 175.22926 * 17 15 14 20 20 H 1.48500 * 109.47078 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47277 * 119.99835 * 19 17 15 22 22 H 1.48504 * 109.47023 * 240.00389 * 19 17 15 23 23 C 1.40841 * 119.68514 * 359.97438 * 14 13 12 24 24 C 1.36479 * 119.81741 * 359.70118 * 23 14 13 25 25 Cl 1.73594 * 119.92616 * 180.29009 * 24 23 14 26 26 C 1.47068 * 87.88302 * 27.34025 * 7 6 2 27 27 H 1.08997 * 109.47491 * 193.06982 * 1 2 3 28 28 H 1.09003 * 109.46988 * 313.06709 * 1 2 3 29 29 H 1.09000 * 109.46758 * 73.06364 * 1 2 3 30 30 H 0.97001 * 120.00097 * 359.97438 * 4 3 2 31 31 H 0.97001 * 120.00148 * 180.02562 * 4 3 2 32 32 H 1.08995 * 113.46286 * 105.37042 * 6 2 1 33 33 H 1.08998 * 113.52134 * 334.94108 * 6 2 1 34 34 H 0.97000 * 120.00162 * 354.58963 * 10 8 7 35 35 H 1.08001 * 119.90681 * 0.02562 * 12 11 10 36 36 H 1.07993 * 120.07588 * 180.02562 * 13 12 11 37 37 H 0.96998 * 120.00164 * 180.02562 * 18 17 15 38 38 H 1.07995 * 120.09278 * 179.97438 * 23 14 13 39 39 H 1.09004 * 113.46431 * 87.44081 * 26 7 6 40 40 H 1.08998 * 113.47180 * 217.87467 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1257 1.3843 0.0000 4 7 1.6600 2.3183 0.8526 5 8 3.0242 1.6578 -0.7673 6 6 2.1594 -0.9561 -1.0227 7 7 3.1629 -1.3017 -0.0047 8 6 4.4370 -1.7408 -0.0078 9 8 5.0092 -1.9388 -1.0621 10 7 5.0786 -1.9557 1.1579 11 6 6.3539 -2.5155 1.1579 12 6 6.7618 -3.3128 0.0889 13 6 8.0092 -3.8640 0.0815 14 6 8.8869 -3.6269 1.1578 15 6 10.1793 -4.1946 1.1571 16 1 10.7192 -4.3072 0.2286 17 6 10.7606 -4.6115 2.3592 18 7 10.1471 -4.3907 3.4941 19 14 12.4126 -5.4834 2.3448 20 1 12.8930 -5.6105 0.9454 21 1 13.3937 -4.6983 3.1361 22 1 12.2640 -6.8353 2.9413 23 6 8.4687 -2.8208 2.2343 24 6 7.2199 -2.2704 2.2248 25 17 6.7043 -1.2702 3.5466 26 6 2.1619 -0.9632 1.0183 27 1 -0.3634 -1.0010 0.2324 28 1 -0.3633 0.7018 0.7508 29 1 -0.3633 0.2994 -0.9831 30 1 0.9411 2.0997 1.4661 31 1 2.0432 3.2095 0.8524 32 1 2.5790 -0.4480 -1.8909 33 1 1.5120 -1.7898 -1.2947 34 1 4.6521 -1.7204 1.9967 35 1 6.0883 -3.4935 -0.7358 36 1 8.3234 -4.4808 -0.7475 37 1 10.5505 -4.6794 4.3277 38 1 9.1360 -2.6351 3.0629 39 1 1.5146 -1.7986 1.2853 40 1 2.5837 -0.4612 1.8891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521622008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:04 Heat of formation + Delta-G solvation = -33.532668 kcal Electronic energy + Delta-G solvation = -26370.092535 eV Core-core repulsion = 22403.916213 eV Total energy + Delta-G solvation = -3966.176323 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.33810 -40.97436 -39.45416 -38.52162 -37.27699 -36.13929 -34.94263 -34.77171 -32.59436 -31.32465 -30.75759 -28.03611 -27.17905 -26.34920 -24.71482 -23.61413 -22.67967 -21.17861 -20.20443 -19.49993 -19.06064 -18.33636 -18.06977 -17.58013 -17.18528 -16.96595 -16.41391 -16.09780 -15.84580 -15.50382 -15.26476 -14.93711 -14.73207 -14.43598 -14.37445 -13.98098 -13.77081 -13.51382 -13.31270 -13.15288 -13.07042 -12.84538 -12.74670 -12.54194 -12.23239 -12.05656 -11.88890 -11.65060 -11.51431 -11.30695 -11.08383 -11.01906 -10.69373 -10.67567 -9.83424 -9.42845 -8.74925 -8.54246 -6.36618 0.62223 0.93508 1.29791 1.41289 1.42066 1.46750 1.52348 1.56853 2.09289 2.24532 2.44387 2.73994 2.84570 3.06800 3.53734 3.72847 3.92281 4.04613 4.26791 4.32040 4.42830 4.50224 4.66844 4.74316 4.85014 4.88587 4.94642 4.99117 4.99524 5.21457 5.29393 5.38134 5.45439 5.65589 5.83556 5.86082 6.02466 6.18725 6.22293 6.44610 6.52282 6.86056 6.90774 6.93784 7.33181 7.50043 8.39207 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.024107 B = 0.002765 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.211839 B =10122.625996 C =10713.217174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.111 4.111 3 C 0.533 3.467 4 N -0.829 5.829 5 O -0.590 6.590 6 C 0.137 3.863 7 N -0.672 5.672 8 C 0.725 3.275 9 O -0.619 6.619 10 N -0.655 5.655 11 C 0.049 3.951 12 C -0.097 4.097 13 C -0.205 4.205 14 C 0.075 3.925 15 C -0.490 4.490 16 H 0.078 0.922 17 C 0.030 3.970 18 N -0.835 5.835 19 Si 0.991 3.009 20 H -0.260 1.260 21 H -0.265 1.265 22 H -0.266 1.266 23 C -0.146 4.146 24 C -0.036 4.036 25 Cl -0.087 7.087 26 C 0.118 3.882 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.421 0.579 31 H 0.407 0.593 32 H 0.054 0.946 33 H 0.126 0.874 34 H 0.407 0.593 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.287 0.713 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.197 8.106 2.677 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.115 4.115 3 C 0.317 3.683 4 N -0.393 5.393 5 O -0.470 6.470 6 C 0.014 3.986 7 N -0.411 5.411 8 C 0.429 3.571 9 O -0.499 6.499 10 N -0.302 5.302 11 C -0.046 4.046 12 C -0.117 4.117 13 C -0.225 4.225 14 C 0.072 3.928 15 C -0.520 4.520 16 H 0.096 0.904 17 C -0.183 4.183 18 N -0.462 5.462 19 Si 0.812 3.188 20 H -0.184 1.184 21 H -0.190 1.190 22 H -0.191 1.191 23 C -0.167 4.167 24 C -0.065 4.065 25 Cl -0.059 7.059 26 C -0.004 4.004 27 H 0.117 0.883 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.253 0.747 31 H 0.239 0.761 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.244 0.756 35 H 0.142 0.858 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.097 7.958 1.751 23.552 hybrid contribution 0.744 0.173 0.691 1.030 sum -21.353 8.131 2.442 22.979 Atomic orbital electron populations 1.21732 0.86330 1.05829 1.04351 1.22313 0.99816 0.90478 0.98922 1.20214 0.81220 0.87198 0.79632 1.43620 1.41189 1.14698 1.39800 1.90814 1.31943 1.81890 1.42339 1.23069 0.86256 0.96625 0.92612 1.48576 1.08614 1.70047 1.13889 1.15345 0.80528 0.77678 0.83547 1.90834 1.66741 1.60171 1.32193 1.41825 1.15756 1.64832 1.07767 1.16834 0.85867 1.04112 0.97815 1.20640 0.97190 0.96516 0.97378 1.21077 0.94162 1.05641 1.01627 1.17899 0.94007 0.89950 0.90951 1.19719 1.00461 1.36839 0.94967 0.90369 1.26751 1.02303 0.95160 0.94078 1.69809 1.38984 1.38023 0.99427 0.85020 0.76284 0.78076 0.79465 1.18394 1.19003 1.19112 1.21097 0.94224 0.99249 1.02149 1.20358 0.95204 1.00392 0.90514 1.98232 1.90894 1.68974 1.47800 1.23491 0.87679 0.97247 0.91979 0.88263 0.89010 0.90885 0.74667 0.76146 0.92706 0.85630 0.75634 0.85757 0.87252 0.90206 0.85110 0.84329 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.33 9.23 71.98 0.66 0.34 16 2 C -0.11 -1.47 1.42 -52.50 -0.07 -1.54 16 3 C 0.53 10.58 7.17 87.66 0.63 11.21 16 4 N -0.83 -7.98 8.75 -173.54 -1.52 -9.50 16 5 O -0.59 -19.97 16.82 -3.04 -0.05 -20.02 16 6 C 0.14 2.94 7.52 83.18 0.63 3.56 16 7 N -0.67 -18.83 3.57 -875.87 -3.13 -21.96 16 8 C 0.73 29.12 8.59 179.06 1.54 30.66 16 9 O -0.62 -30.74 14.25 -3.96 -0.06 -30.80 16 10 N -0.66 -25.80 5.16 -316.70 -1.64 -27.44 16 11 C 0.05 2.34 6.44 38.58 0.25 2.59 16 12 C -0.10 -4.91 8.63 22.13 0.19 -4.72 16 13 C -0.21 -10.80 9.74 22.49 0.22 -10.58 16 14 C 0.07 4.16 5.55 -21.28 -0.12 4.05 16 15 C -0.49 -26.70 9.02 23.38 0.21 -26.49 16 16 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 17 C 0.03 1.51 5.42 85.23 0.46 1.98 16 18 N -0.84 -43.49 10.59 21.82 0.23 -43.26 16 19 Si 0.99 38.80 29.56 68.60 2.03 40.83 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 22 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 23 C -0.15 -7.86 8.38 22.50 0.19 -7.67 16 24 C -0.04 -1.72 6.30 22.18 0.14 -1.58 16 25 Cl -0.09 -3.42 27.75 -2.72 -0.08 -3.49 16 26 C 0.12 1.69 7.46 83.26 0.62 2.31 16 27 H 0.10 -0.10 7.90 -2.39 -0.02 -0.11 16 28 H 0.09 -0.19 6.91 -2.39 -0.02 -0.20 16 29 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.42 0.51 7.63 -92.71 -0.71 -0.20 16 31 H 0.41 3.89 8.93 -92.71 -0.83 3.06 16 32 H 0.05 1.59 7.52 -2.39 -0.02 1.57 16 33 H 0.13 1.79 8.11 -2.39 -0.02 1.77 16 34 H 0.41 13.42 7.46 -92.71 -0.69 12.73 16 35 H 0.12 6.35 5.76 -2.91 -0.02 6.33 16 36 H 0.11 5.43 8.06 -2.91 -0.02 5.40 16 37 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 38 H 0.13 7.31 6.13 -2.91 -0.02 7.29 16 39 H 0.14 0.94 7.94 -2.38 -0.02 0.92 16 40 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 Total: -1.00 -82.92 353.42 0.25 -82.67 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -1.09 Total: 28.86 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.54 Total: 4.10 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -6.05 Total: -102.16 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.11 Total: -50.81 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Atomic # 17 Polarization: -3.42 SS G_CDS: -0.08 Total: -3.49 kcal Total: -82.92 0.25 -82.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521622008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.141 kcal (2) G-P(sol) polarization free energy of solvation -82.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds