Wall clock time and date at job start Tue Mar 31 2020 19:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39733 * 125.78325 * 2 1 4 4 C 1.36146 * 107.86077 * 180.02562 * 3 2 1 5 5 N 1.39380 * 126.26155 * 179.97438 * 4 3 2 6 6 C 1.34772 * 120.00379 * 0.03200 * 5 4 3 7 7 O 1.21608 * 119.99486 * 359.97438 * 6 5 4 8 8 C 1.47568 * 120.00522 * 180.02562 * 6 5 4 9 9 C 1.39739 * 120.07210 * 359.72333 * 8 6 5 10 10 C 1.37937 * 119.91755 * 179.72303 * 9 8 6 11 11 F 1.35099 * 119.95845 * 180.27450 * 10 9 8 12 12 C 1.39093 * 120.07939 * 0.55133 * 10 9 8 13 13 O 1.35809 * 119.92316 * 179.69762 * 12 10 9 14 14 C 1.39093 * 120.15078 * 359.72417 * 12 10 9 15 15 F 1.35107 * 119.96109 * 179.97438 * 14 12 10 16 16 C 1.37936 * 120.07997 * 359.97438 * 14 12 10 17 17 N 1.35805 * 107.47406 * 0.02562 * 4 3 2 18 18 C 1.46501 * 126.09680 * 179.97438 * 17 4 3 19 19 C 1.50697 * 109.46785 * 269.97573 * 18 17 4 20 20 H 1.07993 * 120.00371 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99978 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99920 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99749 * 359.97438 * 21 19 18 24 24 H 1.48510 * 109.46995 * 89.99926 * 23 21 19 25 25 H 1.48494 * 109.47396 * 209.99904 * 23 21 19 26 26 H 1.48504 * 109.47406 * 330.00373 * 23 21 19 27 27 N 1.30835 * 125.77694 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47047 * 270.00356 * 1 2 3 29 29 H 1.09000 * 109.46455 * 29.99615 * 1 2 3 30 30 H 1.08997 * 109.47335 * 149.99991 * 1 2 3 31 31 H 1.07995 * 126.06673 * 0.02562 * 3 2 1 32 32 H 0.97003 * 119.99609 * 180.02562 * 5 4 3 33 33 H 1.07993 * 120.04270 * 359.97242 * 9 8 6 34 34 H 0.96701 * 114.00635 * 270.02501 * 13 12 10 35 35 H 1.08006 * 120.03640 * 180.02562 * 16 14 12 36 36 H 1.09002 * 109.46688 * 29.97097 * 18 17 4 37 37 H 1.08994 * 109.47182 * 149.97170 * 18 17 4 38 38 H 0.97009 * 119.99473 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1336 0.0000 4 6 3.6195 0.7146 -0.0006 5 7 4.7497 1.5302 -0.0013 6 6 4.6132 2.8710 -0.0008 7 8 3.5038 3.3692 -0.0002 8 6 5.8098 3.7346 -0.0021 9 6 7.0853 3.1638 0.0020 10 6 8.2016 3.9740 -0.0050 11 9 9.4351 3.4230 -0.0067 12 6 8.0589 5.3576 -0.0046 13 8 9.1602 6.1523 -0.0053 14 6 6.7908 5.9291 -0.0028 15 9 6.6566 7.2734 -0.0019 16 6 5.6701 5.1249 -0.0021 17 7 3.6088 -0.6434 -0.0015 18 6 4.7858 -1.5158 -0.0029 19 6 5.1880 -1.8143 -1.4242 20 1 4.6232 -1.3965 -2.2444 21 6 6.2771 -2.6210 -1.6775 22 7 6.6278 -2.8820 -2.9179 23 14 7.2545 -3.3432 -0.2589 24 1 6.6804 -4.6598 0.1183 25 1 8.6697 -3.5205 -0.6723 26 1 7.1904 -2.4235 0.9054 27 7 2.2719 -1.0615 -0.0005 28 1 -0.3633 0.0001 1.0277 29 1 -0.3632 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.9877 2.1598 0.0004 32 1 5.6346 1.1328 -0.0020 33 1 7.1969 2.0896 0.0066 34 1 9.4802 6.3819 0.8779 35 1 4.6857 5.5694 -0.0012 36 1 5.6081 -1.0172 0.5103 37 1 4.5483 -2.4472 0.5109 38 1 7.3943 -3.4492 -3.0960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545876252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:55 Heat of formation + Delta-G solvation = -51.821967 kcal Electronic energy + Delta-G solvation = -28252.563993 eV Core-core repulsion = 23733.797906 eV Total energy + Delta-G solvation = -4518.766086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.41568 -49.36084 -41.19418 -40.12037 -39.02516 -37.10883 -35.07656 -33.88320 -32.25932 -30.99946 -30.78183 -29.52408 -28.28207 -26.38675 -24.77218 -23.54577 -22.61383 -21.70412 -20.10432 -19.81427 -19.27817 -18.20367 -17.93585 -17.26889 -17.01592 -16.80941 -16.49089 -15.92306 -15.70290 -15.64645 -15.40318 -15.14691 -14.88214 -14.56161 -14.31561 -13.95583 -13.66068 -13.25272 -13.06431 -12.85161 -12.79734 -12.67964 -12.43938 -12.16307 -11.96899 -11.89948 -11.30436 -11.22638 -10.90171 -10.65398 -10.32874 -10.25981 -9.83224 -9.74113 -9.35885 -9.32002 -8.91463 -8.05859 -7.63040 -6.38680 -4.43984 -0.06735 0.41913 1.97894 2.42585 2.64364 3.03873 3.06051 3.09925 3.14267 3.16771 3.48055 3.49139 3.61341 3.79570 4.08793 4.13798 4.22032 4.46105 4.86684 4.91473 5.13366 5.16684 5.20644 5.34498 5.49432 5.55606 5.92402 5.95504 5.96811 6.02827 6.12019 6.18971 6.26391 6.51368 6.63918 6.92005 7.13256 7.28331 7.37442 7.59082 7.95716 8.18482 8.45318 8.67399 9.15376 10.73377 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009379 B = 0.004058 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.764331 B = 6897.605256 C = 9490.304015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.055 3.945 3 C -0.285 4.285 4 C 0.300 3.700 5 N -0.630 5.630 6 C 0.568 3.432 7 O -0.499 6.499 8 C -0.076 4.076 9 C -0.115 4.115 10 C 0.105 3.895 11 F -0.116 7.116 12 C 0.065 3.935 13 O -0.474 6.474 14 C 0.100 3.900 15 F -0.118 7.118 16 C -0.087 4.087 17 N -0.344 5.344 18 C 0.229 3.771 19 C -0.549 4.549 20 H 0.082 0.918 21 C 0.082 3.918 22 N -0.880 5.880 23 Si 0.872 3.128 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.266 1.266 27 N -0.277 5.277 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.165 0.835 32 H 0.415 0.585 33 H 0.156 0.844 34 H 0.398 0.602 35 H 0.165 0.835 36 H 0.038 0.962 37 H 0.052 0.948 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 16.298 9.680 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.316 4.316 4 C 0.079 3.921 5 N -0.277 5.277 6 C 0.354 3.646 7 O -0.373 6.373 8 C -0.079 4.079 9 C -0.135 4.135 10 C 0.085 3.915 11 F -0.094 7.094 12 C 0.017 3.983 13 O -0.284 6.284 14 C 0.079 3.921 15 F -0.097 7.097 16 C -0.107 4.107 17 N -0.129 5.129 18 C 0.110 3.890 19 C -0.587 4.587 20 H 0.100 0.900 21 C -0.124 4.124 22 N -0.517 5.517 23 Si 0.698 3.302 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.190 1.190 27 N -0.102 5.102 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.182 0.818 32 H 0.253 0.747 33 H 0.174 0.826 34 H 0.256 0.744 35 H 0.183 0.817 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.303 15.202 8.950 17.689 hybrid contribution 1.728 0.199 0.934 1.975 sum 3.031 15.401 9.884 18.550 Atomic orbital electron populations 1.20051 0.87288 1.02733 1.02173 1.22057 0.96670 0.90841 1.01441 1.21296 0.88866 1.00637 1.20842 1.17917 0.87741 0.83063 1.03406 1.42532 1.08587 1.05317 1.71272 1.17647 0.88595 0.80956 0.77360 1.90762 1.25414 1.73737 1.47420 1.19347 0.92207 0.93176 1.03196 1.21443 0.90283 1.01675 1.00098 1.17470 0.80897 0.89679 1.03465 1.91589 1.39035 1.85292 1.93506 1.18511 0.86519 0.88233 1.05049 1.84876 1.41805 1.67695 1.34057 1.17474 0.92339 0.78139 1.04104 1.91568 1.96417 1.28027 1.93649 1.21207 0.99462 0.91844 0.98143 1.49079 1.06210 1.01798 1.55808 1.19963 0.79205 0.90016 0.99785 1.21186 1.14396 1.32866 0.90257 0.89966 1.24821 0.96592 0.95173 0.95779 1.69869 1.26844 1.36345 1.18607 0.86932 0.80119 0.80767 0.82420 1.19392 1.20385 1.19032 1.77373 0.85758 1.21757 1.25324 0.91234 0.90924 0.91313 0.81785 0.74696 0.82644 0.74403 0.81730 0.94397 0.93016 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.44 36.01 0.38 -0.51 16 2 C 0.06 1.04 7.20 -82.46 -0.59 0.45 16 3 C -0.28 -5.43 9.58 -39.78 -0.38 -5.81 16 4 C 0.30 5.90 7.68 -152.75 -1.17 4.73 16 5 N -0.63 -10.10 5.36 -12.28 -0.07 -10.17 16 6 C 0.57 8.18 7.73 -12.46 -0.10 8.08 16 7 O -0.50 -8.17 13.46 5.27 0.07 -8.10 16 8 C -0.08 -0.85 5.87 -104.97 -0.62 -1.46 16 9 C -0.12 -1.19 9.51 -39.13 -0.37 -1.56 16 10 C 0.11 1.08 7.30 -39.37 -0.29 0.79 16 11 F -0.12 -1.31 17.10 2.25 0.04 -1.27 16 12 C 0.06 0.62 6.72 -38.95 -0.26 0.36 16 13 O -0.47 -4.11 13.21 -19.14 -0.25 -4.36 16 14 C 0.10 0.96 7.30 -39.37 -0.29 0.68 16 15 F -0.12 -1.19 17.10 2.25 0.04 -1.15 16 16 C -0.09 -0.87 9.56 -39.13 -0.37 -1.24 16 17 N -0.34 -7.55 3.62 -61.45 -0.22 -7.78 16 18 C 0.23 5.17 5.09 -5.19 -0.03 5.14 16 19 C -0.55 -14.57 9.94 -34.44 -0.34 -14.91 16 20 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 21 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 22 N -0.88 -25.15 13.96 55.43 0.77 -24.38 16 23 Si 0.87 19.05 27.47 -169.99 -4.67 14.38 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.27 -5.31 6.54 56.52 0.37 -4.94 16 27 N -0.28 -6.11 12.56 33.64 0.42 -5.69 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.16 2.98 5.82 -52.49 -0.31 2.68 16 32 H 0.42 5.96 6.01 -40.82 -0.25 5.72 16 33 H 0.16 1.47 6.39 -52.49 -0.34 1.14 16 34 H 0.40 1.42 9.06 45.56 0.41 1.84 16 35 H 0.17 1.53 7.64 -52.48 -0.40 1.13 16 36 H 0.04 0.77 6.58 -51.93 -0.34 0.43 16 37 H 0.05 1.17 7.57 -51.93 -0.39 0.78 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -32.96 343.86 -5.69 -38.65 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -2.47 Total: 7.87 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -4.53 Total: -3.19 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.91 Total: -48.01 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.18 Total: -12.46 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.08 Total: -2.42 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.67 Total: 14.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.96 -5.69 -38.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545876252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.176 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds