Wall clock time and date at job start Tue Mar 31 2020 19:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39733 * 125.78325 * 2 1 4 4 C 1.36146 * 107.86077 * 180.02562 * 3 2 1 5 5 N 1.39380 * 126.26155 * 179.97438 * 4 3 2 6 6 C 1.34772 * 120.00379 * 0.03200 * 5 4 3 7 7 O 1.21608 * 119.99486 * 359.97438 * 6 5 4 8 8 C 1.47568 * 120.00522 * 180.02562 * 6 5 4 9 9 C 1.39739 * 120.07210 * 359.72333 * 8 6 5 10 10 C 1.37937 * 119.91755 * 179.72303 * 9 8 6 11 11 F 1.35099 * 119.95845 * 180.27450 * 10 9 8 12 12 C 1.39093 * 120.07939 * 0.55133 * 10 9 8 13 13 O 1.35809 * 119.92316 * 179.69762 * 12 10 9 14 14 C 1.39093 * 120.15078 * 359.72417 * 12 10 9 15 15 F 1.35107 * 119.96109 * 179.97438 * 14 12 10 16 16 C 1.37936 * 120.07997 * 359.97438 * 14 12 10 17 17 N 1.35805 * 107.47406 * 0.02562 * 4 3 2 18 18 C 1.46501 * 126.09680 * 179.97438 * 17 4 3 19 19 C 1.50697 * 109.46785 * 269.97573 * 18 17 4 20 20 H 1.07993 * 120.00371 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99978 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99920 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99749 * 359.97438 * 21 19 18 24 24 H 1.48510 * 109.46995 * 89.99926 * 23 21 19 25 25 H 1.48494 * 109.47396 * 209.99904 * 23 21 19 26 26 H 1.48504 * 109.47406 * 330.00373 * 23 21 19 27 27 N 1.30835 * 125.77694 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47047 * 270.00356 * 1 2 3 29 29 H 1.09000 * 109.46455 * 29.99615 * 1 2 3 30 30 H 1.08997 * 109.47335 * 149.99991 * 1 2 3 31 31 H 1.07995 * 126.06673 * 0.02562 * 3 2 1 32 32 H 0.97003 * 119.99609 * 180.02562 * 5 4 3 33 33 H 1.07993 * 120.04270 * 359.97242 * 9 8 6 34 34 H 0.96701 * 114.00635 * 270.02501 * 13 12 10 35 35 H 1.08006 * 120.03640 * 180.02562 * 16 14 12 36 36 H 1.09002 * 109.46688 * 29.97097 * 18 17 4 37 37 H 1.08994 * 109.47182 * 149.97170 * 18 17 4 38 38 H 0.97009 * 119.99473 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1336 0.0000 4 6 3.6195 0.7146 -0.0006 5 7 4.7497 1.5302 -0.0013 6 6 4.6132 2.8710 -0.0008 7 8 3.5038 3.3692 -0.0002 8 6 5.8098 3.7346 -0.0021 9 6 7.0853 3.1638 0.0020 10 6 8.2016 3.9740 -0.0050 11 9 9.4351 3.4230 -0.0067 12 6 8.0589 5.3576 -0.0046 13 8 9.1602 6.1523 -0.0053 14 6 6.7908 5.9291 -0.0028 15 9 6.6566 7.2734 -0.0019 16 6 5.6701 5.1249 -0.0021 17 7 3.6088 -0.6434 -0.0015 18 6 4.7858 -1.5158 -0.0029 19 6 5.1880 -1.8143 -1.4242 20 1 4.6232 -1.3965 -2.2444 21 6 6.2771 -2.6210 -1.6775 22 7 6.6278 -2.8820 -2.9179 23 14 7.2545 -3.3432 -0.2589 24 1 6.6804 -4.6598 0.1183 25 1 8.6697 -3.5205 -0.6723 26 1 7.1904 -2.4235 0.9054 27 7 2.2719 -1.0615 -0.0005 28 1 -0.3633 0.0001 1.0277 29 1 -0.3632 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.9877 2.1598 0.0004 32 1 5.6346 1.1328 -0.0020 33 1 7.1969 2.0896 0.0066 34 1 9.4802 6.3819 0.8779 35 1 4.6857 5.5694 -0.0012 36 1 5.6081 -1.0172 0.5103 37 1 4.5483 -2.4472 0.5109 38 1 7.3943 -3.4492 -3.0960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545876252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:55 Heat of formation + Delta-G solvation = -74.922574 kcal Electronic energy + Delta-G solvation = -28253.565710 eV Core-core repulsion = 23733.797906 eV Total energy + Delta-G solvation = -4519.767804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.20947 -50.17572 -42.55887 -41.24696 -39.99282 -37.93137 -36.43822 -35.64203 -34.01034 -31.97091 -31.65133 -31.00278 -29.67383 -28.00752 -25.78133 -24.47091 -24.22342 -22.91278 -21.45087 -21.11639 -20.04870 -19.30165 -19.24621 -18.83144 -18.32404 -17.64632 -17.54345 -16.89861 -16.80110 -16.62350 -16.50714 -16.28544 -16.14747 -15.71737 -15.54359 -15.47261 -14.86894 -14.51056 -14.42878 -14.11952 -13.85657 -13.78189 -13.68840 -13.50975 -13.18381 -13.06117 -12.90575 -12.58668 -12.16116 -12.03741 -11.87592 -11.80828 -11.59982 -11.16580 -10.92987 -10.15870 -10.13371 -9.63444 -9.12746 -8.42604 -6.55432 -0.91747 -0.37608 0.74823 1.12822 1.33584 1.37004 1.43942 1.45784 1.90831 2.02495 2.23977 2.26326 2.29368 2.89135 2.89487 2.96267 3.13015 3.42602 3.64806 3.76387 4.03420 4.17490 4.34622 4.38784 4.44046 4.50950 4.57536 4.66276 4.73602 4.77445 4.91585 4.95136 5.12246 5.18479 5.22332 5.26133 5.85348 5.94243 6.07309 6.27042 6.42817 6.49264 6.73152 6.94027 7.09583 8.73614 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009379 B = 0.004058 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.764331 B = 6897.605256 C = 9490.304015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.061 3.939 3 C -0.297 4.297 4 C 0.298 3.702 5 N -0.631 5.631 6 C 0.573 3.427 7 O -0.519 6.519 8 C -0.085 4.085 9 C -0.106 4.106 10 C 0.096 3.904 11 F -0.122 7.122 12 C 0.084 3.916 13 O -0.483 6.483 14 C 0.099 3.901 15 F -0.119 7.119 16 C -0.074 4.074 17 N -0.367 5.367 18 C 0.237 3.763 19 C -0.554 4.554 20 H 0.024 0.976 21 C 0.026 3.974 22 N -0.933 5.933 23 Si 0.946 3.054 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.229 1.229 27 N -0.324 5.324 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.174 0.826 32 H 0.422 0.578 33 H 0.163 0.837 34 H 0.422 0.578 35 H 0.172 0.828 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.571 17.552 11.776 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 C -0.328 4.328 4 C 0.076 3.924 5 N -0.279 5.279 6 C 0.362 3.638 7 O -0.395 6.395 8 C -0.088 4.088 9 C -0.126 4.126 10 C 0.076 3.924 11 F -0.100 7.100 12 C 0.036 3.964 13 O -0.298 6.298 14 C 0.078 3.922 15 F -0.097 7.097 16 C -0.093 4.093 17 N -0.153 5.153 18 C 0.117 3.883 19 C -0.592 4.592 20 H 0.042 0.958 21 C -0.174 4.174 22 N -0.571 5.571 23 Si 0.767 3.233 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.152 1.152 27 N -0.148 5.148 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.191 0.809 32 H 0.261 0.739 33 H 0.180 0.820 34 H 0.284 0.716 35 H 0.189 0.811 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.126 16.500 11.075 19.986 hybrid contribution 1.434 -0.030 0.195 1.447 sum 3.560 16.471 11.270 20.272 Atomic orbital electron populations 1.20252 0.83858 1.03901 1.04080 1.22884 0.98791 0.89994 0.98780 1.21533 0.88873 1.01080 1.21336 1.18285 0.89204 0.82684 1.02193 1.42657 1.07985 1.05654 1.71595 1.18073 0.89342 0.80406 0.76028 1.90736 1.26581 1.73886 1.48285 1.18970 0.91086 0.93031 1.05734 1.21465 0.89939 1.02113 0.99035 1.17443 0.80586 0.89909 1.04455 1.91576 1.39329 1.85428 1.93697 1.18494 0.86806 0.88068 1.03034 1.84815 1.41359 1.67360 1.36255 1.17360 0.92174 0.78048 1.04581 1.91572 1.96403 1.28014 1.93717 1.21236 0.99998 0.91289 0.96821 1.48986 1.06107 1.02526 1.57643 1.19788 0.80543 0.90849 0.97129 1.21226 1.14071 1.32912 0.91022 0.95796 1.25804 0.97595 0.95162 0.98871 1.70033 1.27888 1.37603 1.21597 0.85753 0.77916 0.80198 0.79414 1.19349 1.19954 1.15155 1.77315 0.86217 1.23535 1.27781 0.88827 0.88784 0.91071 0.80903 0.73930 0.81993 0.71592 0.81087 0.91279 0.92959 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.63 10.44 71.24 0.74 -0.88 16 2 C 0.06 2.29 7.20 43.07 0.31 2.60 16 3 C -0.30 -11.22 9.58 22.14 0.21 -11.01 16 4 C 0.30 11.72 7.68 131.19 1.01 12.73 16 5 N -0.63 -19.93 5.36 -311.02 -1.67 -21.60 16 6 C 0.57 16.05 7.73 86.71 0.67 16.72 16 7 O -0.52 -16.62 13.46 -4.05 -0.05 -16.67 16 8 C -0.08 -1.78 5.87 -20.09 -0.12 -1.90 16 9 C -0.11 -2.02 9.51 22.56 0.21 -1.80 16 10 C 0.10 1.80 7.30 22.40 0.16 1.96 16 11 F -0.12 -2.54 17.10 44.97 0.77 -1.77 16 12 C 0.08 1.43 6.72 22.68 0.15 1.58 16 13 O -0.48 -7.13 13.21 -91.41 -1.21 -8.34 16 14 C 0.10 1.70 7.30 22.40 0.16 1.86 16 15 F -0.12 -2.13 17.10 44.97 0.77 -1.36 16 16 C -0.07 -1.34 9.56 22.56 0.22 -1.13 16 17 N -0.37 -16.29 3.62 -348.33 -1.26 -17.55 16 18 C 0.24 10.61 5.09 85.63 0.44 11.04 16 19 C -0.55 -30.30 9.94 25.60 0.25 -30.05 16 20 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 21 C 0.03 1.41 5.47 84.66 0.46 1.87 16 22 N -0.93 -54.93 13.96 21.45 0.30 -54.63 16 23 Si 0.95 38.51 27.47 68.60 1.88 40.39 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.23 -7.91 6.54 99.48 0.65 -7.26 16 27 N -0.32 -14.45 12.56 -47.47 -0.60 -15.04 16 28 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.17 6.17 5.82 -2.91 -0.02 6.15 16 32 H 0.42 11.80 6.01 -92.71 -0.56 11.24 16 33 H 0.16 2.82 6.39 -2.91 -0.02 2.80 16 34 H 0.42 1.80 9.06 -74.06 -0.67 1.13 16 35 H 0.17 2.89 7.64 -2.91 -0.02 2.87 16 36 H 0.07 2.64 6.58 -2.39 -0.02 2.62 16 37 H 0.05 2.33 7.57 -2.39 -0.02 2.31 16 38 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -73.82 343.86 3.72 -70.11 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.11 Total: 22.87 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 4.89 Total: 3.59 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -3.23 Total: -108.82 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -1.26 Total: -25.02 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 1.54 Total: -3.13 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.88 Total: 40.39 kcal Total: -73.82 3.72 -70.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545876252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.814 kcal (2) G-P(sol) polarization free energy of solvation -73.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds