Wall clock time and date at job start Tue Mar 31 2020 20:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45649 * 117.70117 * 2 1 4 4 C 1.53468 * 110.73438 * 157.96011 * 3 2 1 5 5 N 1.47268 * 107.93724 * 46.90744 * 4 3 2 6 6 C 1.34778 * 121.35097 * 118.50979 * 5 4 3 7 7 O 1.21587 * 119.99980 * 359.72307 * 6 5 4 8 8 N 1.34778 * 120.00199 * 179.71731 * 6 5 4 9 9 C 1.39273 * 120.00057 * 184.64781 * 8 6 5 10 10 C 1.39464 * 119.84116 * 329.04866 * 9 8 6 11 11 C 1.36374 * 120.17833 * 180.27769 * 10 9 8 12 12 C 1.40884 * 119.85027 * 359.74509 * 11 10 9 13 13 C 1.41149 * 120.16044 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00010 * 28.85089 * 13 12 11 15 15 C 1.39889 * 120.00370 * 208.84508 * 13 12 11 16 16 N 1.30887 * 119.99693 * 16.24375 * 15 13 12 17 17 Si 1.86797 * 120.00345 * 196.23786 * 15 13 12 18 18 H 1.48502 * 109.46958 * 90.00309 * 17 15 13 19 19 H 1.48502 * 109.47229 * 210.00299 * 17 15 13 20 20 H 1.48501 * 109.47139 * 330.00134 * 17 15 13 21 21 C 1.40843 * 119.68555 * 359.97438 * 12 11 10 22 22 C 1.36478 * 119.81467 * 359.97438 * 21 12 11 23 23 Cl 1.73597 * 119.92468 * 179.97438 * 22 21 12 24 24 C 1.47042 * 117.29496 * 298.24051 * 5 4 3 25 25 C 1.33384 * 117.70482 * 179.97438 * 2 1 3 26 26 O 1.21281 * 118.48967 * 4.36075 * 25 2 1 27 27 H 1.09009 * 109.47155 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47170 * 300.01798 * 1 2 3 29 29 H 1.08998 * 109.47410 * 60.02292 * 1 2 3 30 30 H 1.09000 * 109.21182 * 278.40832 * 3 2 1 31 31 H 1.08990 * 109.21723 * 37.79059 * 3 2 1 32 32 H 1.09007 * 109.84916 * 287.31208 * 4 3 2 33 33 H 1.09003 * 109.83895 * 166.50396 * 4 3 2 34 34 H 0.96996 * 119.99724 * 4.64530 * 8 6 5 35 35 H 1.08000 * 119.90794 * 0.02562 * 10 9 8 36 36 H 1.08003 * 120.07296 * 179.71849 * 11 10 9 37 37 H 0.96997 * 119.99892 * 179.97438 * 16 15 13 38 38 H 1.07995 * 120.09555 * 180.02562 * 21 12 11 39 39 H 1.09006 * 109.57014 * 162.80674 * 24 5 4 40 40 H 1.08994 * 109.57071 * 283.04770 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1421 1.2896 0.0000 4 6 3.5725 1.1522 0.5386 5 7 4.1972 -0.0055 -0.1235 6 6 5.2935 0.1350 -0.8947 7 8 5.7839 1.2354 -1.0594 8 7 5.8464 -0.9441 -1.4832 9 6 7.0333 -0.8147 -2.2003 10 6 7.3186 0.3803 -2.8604 11 6 8.4761 0.5125 -3.5691 12 6 9.3879 -0.5598 -3.6294 13 6 10.5882 -0.4299 -4.3606 14 1 11.0469 0.5409 -4.4775 15 6 11.1838 -1.5584 -4.9338 16 7 10.4944 -2.6622 -5.0740 17 14 12.9628 -1.4902 -5.4994 18 1 13.8532 -1.8947 -4.3819 19 1 13.1540 -2.4159 -6.6447 20 1 13.2953 -0.1057 -5.9211 21 6 9.0965 -1.7618 -2.9556 22 6 7.9346 -1.8793 -2.2493 23 17 7.5723 -3.3598 -1.4183 24 6 3.5798 -1.3219 0.0960 25 6 2.0851 -1.1809 0.0005 26 8 1.4131 -2.1873 -0.0801 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5141 0.8898 29 1 -0.3634 0.5135 -0.8902 30 1 2.1755 1.6771 -1.0182 31 1 1.5887 1.9852 0.6306 32 1 3.5483 0.9906 1.6164 33 1 4.1406 2.0550 0.3142 34 1 5.4176 -1.8108 -1.4074 35 1 6.6189 1.2017 -2.8135 36 1 8.6932 1.4371 -4.0835 37 1 10.9072 -3.4446 -5.4718 38 1 9.7909 -2.5879 -2.9970 39 1 3.9299 -2.0206 -0.6639 40 1 3.8508 -1.6920 1.0847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000560438623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:29 Heat of formation + Delta-G solvation = -24.071318 kcal Electronic energy + Delta-G solvation = -26483.957145 eV Core-core repulsion = 22518.191098 eV Total energy + Delta-G solvation = -3965.766048 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06700 -39.75968 -37.83166 -36.57519 -35.56400 -35.05449 -34.58277 -33.07944 -30.53600 -29.44921 -29.24565 -28.49766 -25.84034 -25.26446 -23.87567 -21.88184 -21.03086 -20.26570 -18.83771 -18.30704 -17.65350 -17.44654 -16.58057 -16.32273 -16.12585 -15.42286 -15.29619 -15.01914 -14.48794 -14.31558 -13.95690 -13.67142 -13.54448 -12.98733 -12.94033 -12.83750 -12.58710 -12.37931 -12.28076 -12.21615 -11.95704 -11.67918 -11.28632 -11.18034 -11.01575 -10.55925 -10.49937 -10.38911 -10.15165 -9.92799 -9.68908 -9.30810 -9.12912 -8.94274 -8.79743 -7.57835 -7.11312 -6.86226 -4.43772 2.23771 2.34741 2.45155 2.77507 2.83311 3.03128 3.05754 3.07091 3.13714 3.45885 3.86783 4.00656 4.07529 4.44779 4.48353 4.72890 4.79020 4.97339 5.03061 5.12683 5.16425 5.41564 5.47275 5.52958 5.55571 5.88103 6.07789 6.16641 6.48400 6.59927 6.78466 6.89543 7.00752 7.03641 7.09871 7.28786 7.57210 7.65692 7.76237 7.85220 8.06361 8.19197 8.38929 8.69326 8.73675 8.84841 10.08229 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.024028 B = 0.002794 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.006223 B =10019.805725 C =10757.696739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.604 5.604 3 C 0.098 3.902 4 C 0.117 3.883 5 N -0.639 5.639 6 C 0.707 3.293 7 O -0.570 6.570 8 N -0.660 5.660 9 C 0.017 3.983 10 C -0.071 4.071 11 C -0.209 4.209 12 C 0.115 3.885 13 C -0.456 4.456 14 H 0.083 0.917 15 C 0.075 3.925 16 N -0.789 5.789 17 Si 0.911 3.089 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.142 4.142 22 C -0.016 4.016 23 Cl -0.121 7.121 24 C 0.102 3.898 25 C 0.512 3.488 26 O -0.546 6.546 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.394 0.606 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.284 0.716 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.745 4.001 9.506 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.337 5.337 3 C -0.026 4.026 4 C -0.007 4.007 5 N -0.380 5.380 6 C 0.410 3.590 7 O -0.446 6.446 8 N -0.307 5.307 9 C -0.077 4.077 10 C -0.091 4.091 11 C -0.229 4.229 12 C 0.111 3.889 13 C -0.485 4.485 14 H 0.101 0.899 15 C -0.144 4.144 16 N -0.414 5.414 17 Si 0.735 3.265 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.163 4.163 22 C -0.045 4.045 23 Cl -0.093 7.093 24 C -0.025 4.025 25 C 0.300 3.700 26 O -0.423 6.423 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.135 0.865 34 H 0.230 0.770 35 H 0.143 0.857 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.147 0.853 39 H 0.130 0.870 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.716 3.907 9.307 17.030 hybrid contribution 0.457 -0.716 -0.180 0.868 sum -13.259 3.190 9.128 16.410 Atomic orbital electron populations 1.21823 0.79412 1.04802 1.01449 1.47104 1.07719 1.06102 1.72755 1.21965 0.93507 0.84370 1.02751 1.21896 0.91316 0.90993 0.96468 1.47366 1.30256 1.07522 1.52897 1.15719 0.79681 0.85114 0.78507 1.90878 1.63222 1.24574 1.65975 1.42167 1.25147 1.09934 1.53436 1.16636 0.88111 0.96569 1.06373 1.20543 0.98065 0.95430 0.95093 1.20825 0.95459 1.00445 1.06178 1.17546 0.92015 0.90056 0.89242 1.19540 1.05782 0.94997 1.28147 0.89860 1.25945 0.99725 0.94670 0.94074 1.69816 1.36866 1.02717 1.31969 0.86258 0.82002 0.79423 0.78784 1.19168 1.20247 1.18516 1.20787 0.95598 1.00694 0.99208 1.20323 0.96885 0.85429 1.01821 1.98252 1.94925 1.37314 1.78789 1.21748 0.88770 0.86949 1.05029 1.20279 0.90716 0.83125 0.75925 1.90744 1.65556 1.35656 1.50386 0.88970 0.91997 0.92056 0.90848 0.89296 0.90474 0.86456 0.76950 0.85671 0.87939 0.90548 0.85323 0.87009 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 10.43 59.85 0.62 1.14 16 2 N -0.60 -5.75 3.20 -182.48 -0.58 -6.33 16 3 C 0.10 0.74 6.60 -4.26 -0.03 0.71 16 4 C 0.12 1.07 6.56 -3.38 -0.02 1.04 16 5 N -0.64 -7.93 2.97 -179.59 -0.53 -8.47 16 6 C 0.71 11.96 8.20 -86.92 -0.71 11.25 16 7 O -0.57 -11.32 12.96 5.29 0.07 -11.25 16 8 N -0.66 -11.81 4.99 -14.07 -0.07 -11.88 16 9 C 0.02 0.37 6.39 -83.52 -0.53 -0.16 16 10 C -0.07 -1.62 8.65 -39.80 -0.34 -1.97 16 11 C -0.21 -5.00 9.74 -39.25 -0.38 -5.38 16 12 C 0.11 2.93 5.52 -106.81 -0.59 2.34 16 13 C -0.46 -11.51 9.02 -37.86 -0.34 -11.86 16 14 H 0.08 2.02 7.90 -52.48 -0.41 1.61 16 15 C 0.07 1.79 5.13 -17.34 -0.09 1.70 16 16 N -0.79 -19.62 11.16 55.54 0.62 -19.00 16 17 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 18 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 21 C -0.14 -3.54 8.37 -39.23 -0.33 -3.87 16 22 C -0.02 -0.36 6.30 -39.72 -0.25 -0.61 16 23 Cl -0.12 -2.31 27.85 -51.86 -1.44 -3.75 16 24 C 0.10 1.12 6.45 -5.02 -0.03 1.09 16 25 C 0.51 6.10 7.58 -11.73 -0.09 6.01 16 26 O -0.55 -8.15 15.97 5.56 0.09 -8.06 16 27 H 0.09 0.87 6.59 -51.92 -0.34 0.53 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.12 1.17 7.06 -51.93 -0.37 0.80 16 34 H 0.39 6.24 5.54 -40.82 -0.23 6.02 16 35 H 0.13 2.81 5.87 -52.49 -0.31 2.50 16 36 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 37 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 38 H 0.13 3.32 6.43 -52.49 -0.34 2.98 16 39 H 0.11 1.27 5.91 -51.93 -0.31 0.96 16 40 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 345.38 15.07 5.20 5.20 Total: -1.00 -30.34 345.38 -9.19 -39.53 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -4.39 Total: 9.60 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -3.12 Total: 1.43 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.57 Total: -45.68 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.16 Total: -19.32 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -1.44 Total: -3.75 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.34 -9.19 -39.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560438623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.462 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds