Wall clock time and date at job start Tue Mar 31 2020 20:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45649 * 117.70117 * 2 1 4 4 C 1.53468 * 110.73438 * 157.96011 * 3 2 1 5 5 N 1.47268 * 107.93724 * 46.90744 * 4 3 2 6 6 C 1.34778 * 121.35097 * 118.50979 * 5 4 3 7 7 O 1.21587 * 119.99980 * 359.72307 * 6 5 4 8 8 N 1.34778 * 120.00199 * 179.71731 * 6 5 4 9 9 C 1.39273 * 120.00057 * 184.64781 * 8 6 5 10 10 C 1.39464 * 119.84116 * 329.04866 * 9 8 6 11 11 C 1.36374 * 120.17833 * 180.27769 * 10 9 8 12 12 C 1.40884 * 119.85027 * 359.74509 * 11 10 9 13 13 C 1.41149 * 120.16044 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00010 * 28.85089 * 13 12 11 15 15 C 1.39889 * 120.00370 * 208.84508 * 13 12 11 16 16 N 1.30887 * 119.99693 * 16.24375 * 15 13 12 17 17 Si 1.86797 * 120.00345 * 196.23786 * 15 13 12 18 18 H 1.48502 * 109.46958 * 90.00309 * 17 15 13 19 19 H 1.48502 * 109.47229 * 210.00299 * 17 15 13 20 20 H 1.48501 * 109.47139 * 330.00134 * 17 15 13 21 21 C 1.40843 * 119.68555 * 359.97438 * 12 11 10 22 22 C 1.36478 * 119.81467 * 359.97438 * 21 12 11 23 23 Cl 1.73597 * 119.92468 * 179.97438 * 22 21 12 24 24 C 1.47042 * 117.29496 * 298.24051 * 5 4 3 25 25 C 1.33384 * 117.70482 * 179.97438 * 2 1 3 26 26 O 1.21281 * 118.48967 * 4.36075 * 25 2 1 27 27 H 1.09009 * 109.47155 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47170 * 300.01798 * 1 2 3 29 29 H 1.08998 * 109.47410 * 60.02292 * 1 2 3 30 30 H 1.09000 * 109.21182 * 278.40832 * 3 2 1 31 31 H 1.08990 * 109.21723 * 37.79059 * 3 2 1 32 32 H 1.09007 * 109.84916 * 287.31208 * 4 3 2 33 33 H 1.09003 * 109.83895 * 166.50396 * 4 3 2 34 34 H 0.96996 * 119.99724 * 4.64530 * 8 6 5 35 35 H 1.08000 * 119.90794 * 0.02562 * 10 9 8 36 36 H 1.08003 * 120.07296 * 179.71849 * 11 10 9 37 37 H 0.96997 * 119.99892 * 179.97438 * 16 15 13 38 38 H 1.07995 * 120.09555 * 180.02562 * 21 12 11 39 39 H 1.09006 * 109.57014 * 162.80674 * 24 5 4 40 40 H 1.08994 * 109.57071 * 283.04770 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1421 1.2896 0.0000 4 6 3.5725 1.1522 0.5386 5 7 4.1972 -0.0055 -0.1235 6 6 5.2935 0.1350 -0.8947 7 8 5.7839 1.2354 -1.0594 8 7 5.8464 -0.9441 -1.4832 9 6 7.0333 -0.8147 -2.2003 10 6 7.3186 0.3803 -2.8604 11 6 8.4761 0.5125 -3.5691 12 6 9.3879 -0.5598 -3.6294 13 6 10.5882 -0.4299 -4.3606 14 1 11.0469 0.5409 -4.4775 15 6 11.1838 -1.5584 -4.9338 16 7 10.4944 -2.6622 -5.0740 17 14 12.9628 -1.4902 -5.4994 18 1 13.8532 -1.8947 -4.3819 19 1 13.1540 -2.4159 -6.6447 20 1 13.2953 -0.1057 -5.9211 21 6 9.0965 -1.7618 -2.9556 22 6 7.9346 -1.8793 -2.2493 23 17 7.5723 -3.3598 -1.4183 24 6 3.5798 -1.3219 0.0960 25 6 2.0851 -1.1809 0.0005 26 8 1.4131 -2.1873 -0.0801 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5141 0.8898 29 1 -0.3634 0.5135 -0.8902 30 1 2.1755 1.6771 -1.0182 31 1 1.5887 1.9852 0.6306 32 1 3.5483 0.9906 1.6164 33 1 4.1406 2.0550 0.3142 34 1 5.4176 -1.8108 -1.4074 35 1 6.6189 1.2017 -2.8135 36 1 8.6932 1.4371 -4.0835 37 1 10.9072 -3.4446 -5.4718 38 1 9.7909 -2.5879 -2.9970 39 1 3.9299 -2.0206 -0.6639 40 1 3.8508 -1.6920 1.0847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000560438623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:28 Heat of formation + Delta-G solvation = -42.165723 kcal Electronic energy + Delta-G solvation = -26484.741778 eV Core-core repulsion = 22518.191098 eV Total energy + Delta-G solvation = -3966.550680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.13167 -40.99741 -39.44195 -37.62065 -37.25081 -36.19588 -36.06557 -34.74104 -31.54736 -31.25165 -30.68339 -29.57547 -27.05584 -26.43371 -24.92659 -23.55206 -22.68724 -21.59502 -20.02471 -19.46183 -19.19047 -18.69973 -17.70097 -17.33122 -17.16887 -17.07049 -16.52294 -16.13293 -16.00177 -15.68686 -15.29623 -14.79608 -14.66249 -14.54128 -14.35243 -14.03843 -13.77654 -13.66689 -13.49867 -13.13892 -13.00433 -12.92387 -12.90567 -12.68038 -12.40760 -12.16971 -12.05407 -11.89418 -11.68083 -11.48497 -11.29643 -10.95725 -10.63694 -9.95644 -9.77648 -9.39987 -8.87471 -8.64137 -6.31921 0.66702 0.96572 1.30379 1.34461 1.41892 1.43183 1.48819 1.54735 1.92842 2.06807 2.22486 2.69226 2.74280 3.26143 3.59196 3.70707 3.88579 4.15124 4.23277 4.33512 4.38378 4.48210 4.61974 4.63239 4.74223 4.87285 4.91309 4.95540 4.99821 5.08531 5.22040 5.25569 5.35696 5.44101 5.55159 5.82654 5.87544 6.02466 6.23127 6.24188 6.51787 6.75977 6.86516 6.88528 6.92242 7.44168 8.31861 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.024028 B = 0.002794 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.006223 B =10019.805725 C =10757.696739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.601 5.601 3 C 0.101 3.899 4 C 0.111 3.889 5 N -0.629 5.629 6 C 0.707 3.293 7 O -0.601 6.601 8 N -0.660 5.660 9 C 0.031 3.969 10 C -0.078 4.078 11 C -0.218 4.218 12 C 0.087 3.913 13 C -0.489 4.489 14 H 0.082 0.918 15 C 0.037 3.963 16 N -0.821 5.821 17 Si 0.982 3.018 18 H -0.263 1.263 19 H -0.269 1.269 20 H -0.258 1.258 21 C -0.159 4.159 22 C -0.024 4.024 23 Cl -0.090 7.090 24 C 0.101 3.899 25 C 0.509 3.491 26 O -0.583 6.583 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.404 0.596 35 H 0.130 0.870 36 H 0.108 0.892 37 H 0.290 0.710 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.866 4.546 10.795 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.332 5.332 3 C -0.021 4.021 4 C -0.011 4.011 5 N -0.369 5.369 6 C 0.410 3.590 7 O -0.480 6.480 8 N -0.308 5.308 9 C -0.064 4.064 10 C -0.098 4.098 11 C -0.238 4.238 12 C 0.084 3.916 13 C -0.518 4.518 14 H 0.100 0.900 15 C -0.179 4.179 16 N -0.446 5.446 17 Si 0.803 3.197 18 H -0.188 1.188 19 H -0.194 1.194 20 H -0.181 1.181 21 C -0.179 4.179 22 C -0.053 4.053 23 Cl -0.062 7.062 24 C -0.024 4.024 25 C 0.296 3.704 26 O -0.464 6.464 27 H 0.089 0.911 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.148 0.852 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.243 0.757 35 H 0.148 0.852 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.911 4.477 10.638 18.855 hybrid contribution 0.581 -0.859 -0.451 1.131 sum -14.330 3.618 10.187 17.950 Atomic orbital electron populations 1.21957 0.78138 1.04079 1.03471 1.47245 1.08707 1.06045 1.71214 1.22079 0.92788 0.83970 1.03307 1.22214 0.91763 0.89393 0.97756 1.47360 1.28724 1.09283 1.51532 1.15810 0.80464 0.84139 0.78631 1.90856 1.64516 1.25567 1.67074 1.42072 1.24231 1.11037 1.53503 1.16682 0.88878 0.95699 1.05119 1.20658 0.97839 0.96121 0.95198 1.20984 0.95812 1.00486 1.06561 1.17842 0.92820 0.90887 0.90083 1.19760 1.06704 0.95721 1.29625 0.89955 1.26732 1.03576 0.93904 0.93651 1.69864 1.38582 1.03444 1.32752 0.85194 0.76530 0.79548 0.78439 1.18759 1.19380 1.18123 1.20693 0.96491 1.00299 1.00465 1.20359 0.96335 0.86986 1.01624 1.98249 1.94667 1.35313 1.77932 1.21860 0.88403 0.85996 1.06184 1.20333 0.90743 0.83438 0.75840 1.90736 1.66152 1.37017 1.52483 0.91063 0.89118 0.90834 0.91464 0.85214 0.87782 0.87208 0.75720 0.85235 0.87360 0.89916 0.86846 0.87528 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 10.43 127.77 1.33 2.16 16 2 N -0.60 -9.79 3.20 -850.40 -2.72 -12.51 16 3 C 0.10 1.18 6.60 86.70 0.57 1.75 16 4 C 0.11 1.70 6.56 86.39 0.57 2.26 16 5 N -0.63 -14.33 2.97 -840.37 -2.50 -16.82 16 6 C 0.71 23.07 8.20 179.05 1.47 24.54 16 7 O -0.60 -23.46 12.96 -3.99 -0.05 -23.52 16 8 N -0.66 -23.05 4.99 -316.69 -1.58 -24.63 16 9 C 0.03 1.36 6.39 38.58 0.25 1.61 16 10 C -0.08 -3.59 8.65 22.13 0.19 -3.40 16 11 C -0.22 -10.73 9.74 22.48 0.22 -10.51 16 12 C 0.09 4.58 5.52 -21.28 -0.12 4.46 16 13 C -0.49 -25.49 9.02 23.38 0.21 -25.28 16 14 H 0.08 4.13 7.90 -2.91 -0.02 4.11 16 15 C 0.04 1.81 5.13 85.23 0.44 2.25 16 16 N -0.82 -41.71 11.16 21.82 0.24 -41.46 16 17 Si 0.98 37.18 29.59 68.60 2.03 39.21 16 18 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 19 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 20 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 21 C -0.16 -8.11 8.37 22.50 0.19 -7.92 16 22 C -0.02 -1.10 6.30 22.18 0.14 -0.96 16 23 Cl -0.09 -3.37 27.85 -2.72 -0.08 -3.44 16 24 C 0.10 2.03 6.45 85.45 0.55 2.58 16 25 C 0.51 11.20 7.58 87.79 0.67 11.86 16 26 O -0.58 -16.93 15.97 -3.03 -0.05 -16.98 16 27 H 0.07 1.25 6.59 -2.38 -0.02 1.23 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.13 0.55 8.07 -2.39 -0.02 0.53 16 32 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.11 1.94 7.06 -2.39 -0.02 1.93 16 34 H 0.40 12.34 5.54 -92.71 -0.51 11.82 16 35 H 0.13 5.84 5.87 -2.91 -0.02 5.83 16 36 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 37 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 38 H 0.11 6.06 6.43 -2.91 -0.02 6.04 16 39 H 0.11 2.26 5.91 -2.38 -0.01 2.25 16 40 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -67.46 345.38 2.56 -64.90 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 0.59 Total: 29.86 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 6.67 Total: 5.40 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -6.56 Total: -95.43 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.10 Total: -40.49 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Atomic # 17 Polarization: -3.37 SS G_CDS: -0.08 Total: -3.44 kcal Total: -67.46 2.56 -64.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560438623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.732 kcal (2) G-P(sol) polarization free energy of solvation -67.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds