Wall clock time and date at job start Tue Mar 31 2020 19:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38512 * 120.86050 * 2 1 4 4 Cl 1.73602 * 120.36309 * 359.97438 * 3 2 1 5 5 C 1.38432 * 119.27722 * 179.75229 * 3 2 1 6 6 N 1.31949 * 121.06070 * 0.53051 * 5 3 2 7 7 C 1.31669 * 121.89392 * 359.72287 * 6 5 3 8 8 C 1.39561 * 120.59305 * 0.02562 * 7 6 5 9 9 C 1.47840 * 120.55179 * 180.02562 * 8 7 6 10 10 O 1.21554 * 120.00317 * 230.05002 * 9 8 7 11 11 N 1.34778 * 120.00237 * 50.04137 * 9 8 7 12 12 C 1.46963 * 120.59040 * 5.59775 * 11 9 8 13 13 C 1.53818 * 108.39789 * 124.75360 * 12 11 9 14 14 N 1.46968 * 108.57747 * 49.63853 * 13 12 11 15 15 C 1.34777 * 120.59741 * 124.62593 * 14 13 12 16 16 O 1.21684 * 120.00097 * 174.83498 * 15 14 13 17 17 C 1.46376 * 119.99421 * 354.83436 * 15 14 13 18 18 H 1.07994 * 120.00181 * 6.30966 * 17 15 14 19 19 C 1.40055 * 119.99608 * 186.30351 * 17 15 14 20 20 N 1.30668 * 119.99736 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 119.99962 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46968 * 60.00380 * 21 19 17 23 23 H 1.48502 * 109.47115 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47114 * 300.00214 * 21 19 17 25 25 C 1.46966 * 118.80809 * 304.64133 * 14 13 12 26 26 C 1.46969 * 120.59658 * 185.87095 * 11 9 8 27 27 H 1.08996 * 109.46919 * 264.51675 * 1 2 3 28 28 H 1.09002 * 109.47065 * 144.51658 * 1 2 3 29 29 H 1.09003 * 109.46764 * 24.51695 * 1 2 3 30 30 H 1.08000 * 119.46629 * 180.25325 * 5 3 2 31 31 H 1.07997 * 119.70202 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.60580 * 244.53295 * 12 11 9 33 33 H 1.08994 * 109.61271 * 5.04530 * 12 11 9 34 34 H 1.08993 * 109.74242 * 289.84995 * 13 12 11 35 35 H 1.09000 * 109.52816 * 169.29976 * 13 12 11 36 36 H 0.97004 * 120.00159 * 179.97438 * 20 19 17 37 37 H 1.08994 * 109.61444 * 295.48537 * 25 14 13 38 38 H 1.09005 * 109.74654 * 175.05654 * 25 14 13 39 39 H 1.09003 * 109.60314 * 354.95377 * 26 11 9 40 40 H 1.08993 * 109.60648 * 115.46472 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1890 0.0000 4 17 1.3818 2.7106 -0.0007 5 6 3.6013 1.1508 0.0052 6 7 4.2506 0.0021 -0.0003 7 6 3.6198 -1.1536 -0.0055 8 6 2.2250 -1.2015 -0.0059 9 6 1.5176 -2.4997 -0.0112 10 8 0.6334 -2.7068 -0.8192 11 7 1.8533 -3.4537 0.8797 12 6 2.8331 -3.1761 1.9392 13 6 2.1847 -3.4976 3.2965 14 7 1.5819 -4.8359 3.2221 15 6 1.9181 -5.7902 4.1125 16 8 1.3447 -6.8634 4.0998 17 6 2.9730 -5.5355 5.0948 18 1 3.4111 -4.5515 5.1739 19 6 3.4141 -6.5678 5.9322 20 7 2.8842 -7.7584 5.8362 21 14 4.7598 -6.2427 7.1862 22 1 4.3144 -5.1834 8.1268 23 1 5.0437 -7.4890 7.9421 24 1 5.9915 -5.7973 6.4864 25 6 0.6062 -5.1151 2.1591 26 6 1.2504 -4.7920 0.8053 27 1 -0.3633 -0.0982 1.0229 28 1 -0.3633 -0.8368 -0.5965 29 1 -0.3633 0.9351 -0.4265 30 1 4.1583 2.0760 0.0094 31 1 4.1868 -2.0727 -0.0104 32 1 3.7147 -3.8006 1.7949 33 1 3.1177 -2.1244 1.9080 34 1 1.4131 -2.7608 3.5196 35 1 2.9457 -3.4820 4.0767 36 1 3.1900 -8.4735 6.4159 37 1 -0.2777 -4.4934 2.3013 38 1 0.3219 -6.1671 2.1871 39 1 0.4895 -4.8075 0.0250 40 1 2.0219 -5.5288 0.5822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565184390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:39 Heat of formation + Delta-G solvation = -47.139071 kcal Electronic energy + Delta-G solvation = -26937.492124 eV Core-core repulsion = 22970.725783 eV Total energy + Delta-G solvation = -3966.766341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.16675 -40.68722 -39.58502 -37.77778 -37.60654 -35.00071 -34.91656 -34.50661 -33.08131 -31.85967 -29.42069 -28.96854 -27.84442 -25.69758 -24.81174 -23.62247 -23.37724 -21.69714 -20.27648 -19.10859 -18.35551 -17.93063 -17.66486 -17.50358 -17.20691 -16.42156 -16.18957 -16.17067 -15.86074 -15.73196 -15.56298 -15.09967 -14.56374 -14.39762 -14.14638 -13.99640 -13.90336 -13.55311 -13.46254 -13.14908 -13.13463 -13.00608 -12.86177 -12.68562 -12.41543 -12.34160 -12.21116 -12.01791 -11.98494 -11.42701 -10.90090 -10.68501 -10.59812 -10.17059 -10.08465 -9.78707 -9.04271 -8.28164 -6.82921 -0.51564 -0.18886 0.84427 1.43241 1.43738 1.46484 1.57646 1.72428 2.25249 2.41911 2.47670 2.77369 3.08685 3.34519 3.39676 3.45538 3.59434 3.87082 3.90803 3.92971 4.04529 4.15853 4.27004 4.40836 4.42425 4.48973 4.52701 4.55046 4.63939 4.72315 4.84365 4.91311 5.01082 5.04984 5.24788 5.28679 5.41067 5.70351 6.11399 6.16947 6.34460 6.58121 6.87138 6.89527 7.38449 8.45883 8.67602 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.016350 B = 0.003057 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.143870 B = 9157.677839 C =10068.425249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.012 3.988 3 C -0.101 4.101 4 Cl -0.034 7.034 5 C 0.142 3.858 6 N -0.482 5.482 7 C 0.145 3.855 8 C -0.182 4.182 9 C 0.572 3.428 10 O -0.561 6.561 11 N -0.594 5.594 12 C 0.095 3.905 13 C 0.106 3.894 14 N -0.644 5.644 15 C 0.543 3.457 16 O -0.630 6.630 17 C -0.566 4.566 18 H 0.100 0.900 19 C 0.030 3.970 20 N -0.823 5.823 21 Si 0.993 3.007 22 H -0.255 1.255 23 H -0.280 1.280 24 H -0.249 1.249 25 C 0.110 3.890 26 C 0.113 3.887 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.198 0.802 31 H 0.182 0.818 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.273 0.727 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 21.124 -10.435 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.003 3.997 3 C -0.130 4.130 4 Cl -0.005 7.005 5 C -0.015 4.015 6 N -0.191 5.191 7 C -0.013 4.013 8 C -0.187 4.187 9 C 0.360 3.640 10 O -0.440 6.440 11 N -0.326 5.326 12 C -0.028 4.028 13 C -0.018 4.018 14 N -0.381 5.381 15 C 0.350 3.650 16 O -0.517 6.517 17 C -0.602 4.602 18 H 0.118 0.882 19 C -0.185 4.185 20 N -0.453 5.453 21 Si 0.812 3.188 22 H -0.179 1.179 23 H -0.206 1.206 24 H -0.173 1.173 25 C -0.015 4.015 26 C -0.011 4.011 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.215 0.785 31 H 0.199 0.801 32 H 0.104 0.896 33 H 0.130 0.870 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.013 20.381 -10.808 23.265 hybrid contribution -0.840 -0.410 0.568 1.094 sum 2.173 19.971 -10.240 22.548 Atomic orbital electron populations 1.21128 0.88538 1.05279 1.04250 1.20347 0.98135 0.90162 0.91062 1.21912 0.94286 0.88014 1.08784 1.98389 1.77937 1.27380 1.96765 1.23459 0.89312 0.97999 0.90777 1.67986 1.39452 0.98016 1.13619 1.23338 0.89677 0.97616 0.90659 1.20661 0.95712 0.93059 1.09288 1.18201 0.82054 0.83408 0.80358 1.90738 1.32155 1.80694 1.40446 1.48039 1.42969 1.11934 1.29622 1.22553 0.91237 1.03101 0.85877 1.22075 0.98443 0.83578 0.97730 1.48031 1.45543 1.13006 1.31525 1.18685 0.83236 0.82046 0.81061 1.90557 1.58049 1.27751 1.75390 1.21455 1.20618 0.98944 1.19161 0.88246 1.26965 0.98860 0.93774 0.98892 1.70177 1.37889 1.02875 1.34331 0.85134 0.77826 0.78419 0.77388 1.17892 1.20559 1.17267 1.21515 0.91697 1.01260 0.87003 1.21917 0.98831 0.82672 0.97631 0.89267 0.89991 0.88841 0.78528 0.80103 0.89550 0.87036 0.92255 0.87636 0.91674 0.92693 0.91233 0.87921 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.32 71.24 0.66 -1.95 16 2 C 0.01 0.24 5.95 -19.38 -0.12 0.12 16 3 C -0.10 -1.66 6.33 22.38 0.14 -1.52 16 4 Cl -0.03 -0.47 27.37 -2.72 -0.07 -0.54 16 5 C 0.14 2.12 10.97 84.72 0.93 3.05 16 6 N -0.48 -8.78 10.34 -194.66 -2.01 -10.79 16 7 C 0.14 2.71 8.76 85.04 0.74 3.46 16 8 C -0.18 -3.95 4.78 -20.00 -0.10 -4.04 16 9 C 0.57 15.29 6.76 86.78 0.59 15.87 16 10 O -0.56 -18.08 14.43 -3.89 -0.06 -18.13 16 11 N -0.59 -16.10 2.94 -820.56 -2.41 -18.51 16 12 C 0.10 2.34 5.59 86.57 0.48 2.83 16 13 C 0.11 3.36 6.52 86.57 0.56 3.92 16 14 N -0.64 -27.32 2.95 -822.23 -2.42 -29.75 16 15 C 0.54 29.87 7.61 86.36 0.66 30.53 16 16 O -0.63 -40.91 14.48 -4.30 -0.06 -40.97 16 17 C -0.57 -29.71 8.87 24.83 0.22 -29.49 16 18 H 0.10 4.50 5.64 -2.91 -0.02 4.48 16 19 C 0.03 1.61 5.50 85.31 0.47 2.08 16 20 N -0.82 -48.81 11.85 21.84 0.26 -48.55 16 21 Si 0.99 38.53 29.56 68.60 2.03 40.56 16 22 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 23 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 24 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 25 C 0.11 4.16 6.58 86.41 0.57 4.72 16 26 C 0.11 3.48 6.60 86.41 0.57 4.05 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.94 5.90 -2.39 -0.01 1.93 16 29 H 0.09 1.50 6.81 -2.39 -0.02 1.48 16 30 H 0.20 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.18 2.87 7.47 -2.91 -0.02 2.85 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.11 2.15 5.12 -2.39 -0.01 2.13 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.11 3.41 5.29 -2.39 -0.01 3.40 16 36 H 0.27 14.81 8.29 -92.71 -0.77 14.04 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 3.03 7.03 -2.38 -0.02 3.01 16 39 H 0.10 3.04 6.99 -2.39 -0.02 3.03 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -75.02 342.69 2.74 -72.28 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 1.10 Total: 20.79 kcal Atomic # 6 Polarization: 27.24 SS G_CDS: 6.39 Total: 33.63 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -6.59 Total: -107.60 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -0.12 Total: -59.11 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.07 Total: -0.54 kcal Total: -75.02 2.74 -72.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565184390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.138 kcal (2) G-P(sol) polarization free energy of solvation -75.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds