Wall clock time and date at job start Tue Mar 31 2020 19:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40092 * 125.97365 * 180.13104 * 4 3 2 6 6 C 1.34773 * 120.00080 * 0.31318 * 5 4 3 7 7 O 1.21595 * 120.00092 * 0.02562 * 6 5 4 8 8 C 1.47541 * 119.99842 * 179.97438 * 6 5 4 9 9 C 1.39948 * 120.16471 * 269.99809 * 8 6 5 10 10 F 1.35103 * 120.04411 * 0.02562 * 9 8 6 11 11 C 1.38157 * 119.90700 * 179.97438 * 9 8 6 12 12 C 1.38324 * 120.24064 * 0.02562 * 11 9 8 13 13 C 1.38665 * 120.33153 * 359.97438 * 12 11 9 14 14 O 1.36011 * 119.95441 * 180.02562 * 13 12 11 15 15 C 1.38693 * 120.08796 * 359.74553 * 13 12 11 16 16 F 1.35101 * 120.12114 * 180.27914 * 15 13 12 17 17 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46503 * 125.97339 * 359.97438 * 18 2 1 20 20 C 1.50699 * 109.46808 * 90.00128 * 19 18 2 21 21 H 1.07995 * 120.00443 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99491 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99834 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00328 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47140 * 89.99413 * 24 22 20 26 26 H 1.48492 * 109.47014 * 209.99919 * 24 22 20 27 27 H 1.48502 * 109.46845 * 329.99556 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 32 32 H 0.97004 * 119.99910 * 180.31575 * 5 4 3 33 33 H 1.07997 * 119.87471 * 180.02562 * 11 9 8 34 34 H 1.08001 * 119.83309 * 180.02562 * 12 11 9 35 35 H 0.96696 * 114.00363 * 89.99981 * 14 13 12 36 36 H 1.08997 * 109.46890 * 209.99586 * 19 18 2 37 37 H 1.08999 * 109.46830 * 329.99997 * 19 18 2 38 38 H 0.96999 * 120.00540 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7730 1.4744 0.0073 6 6 4.6363 2.8152 0.0141 7 8 3.5270 3.3132 0.0175 8 6 5.8326 3.6787 0.0186 9 6 6.4027 4.0841 1.2307 10 9 5.8586 3.6849 2.4011 11 6 7.5232 4.8923 1.2287 12 6 8.0838 5.3030 0.0327 13 6 7.5271 4.9072 -1.1740 14 8 8.0850 5.3150 -2.3455 15 6 6.4057 4.0912 -1.1880 16 9 5.8661 3.7005 -2.3634 17 7 3.6337 -0.6578 -0.0035 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0129 20 6 1.6945 -2.9551 -1.4362 21 1 1.9102 -2.2832 -2.2537 22 6 1.2769 -4.2435 -1.6946 23 7 1.1409 -4.6540 -2.9366 24 14 0.9031 -5.4056 -0.2806 25 1 -0.5279 -5.2821 0.0964 26 1 1.1861 -6.8018 -0.6994 27 1 1.7541 -5.0564 0.8852 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 -0.0006 32 1 5.6580 1.0772 0.0049 33 1 7.9629 5.2045 2.1644 34 1 8.9600 5.9344 0.0388 35 1 8.7630 4.7165 -2.6877 36 1 2.5847 -3.1073 0.4973 37 1 0.8914 -2.5584 0.5009 38 1 0.8467 -5.5602 -3.1185 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572564142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:59 Heat of formation + Delta-G solvation = -49.839873 kcal Electronic energy + Delta-G solvation = -28083.133377 eV Core-core repulsion = 23564.453241 eV Total energy + Delta-G solvation = -4518.680136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.49111 -49.43855 -40.95169 -40.12932 -39.22444 -37.00461 -35.03856 -33.38720 -32.08860 -31.37195 -31.06349 -29.90238 -27.29695 -26.46726 -25.09524 -23.35049 -22.73450 -21.71980 -20.01768 -19.82859 -18.80239 -18.61101 -18.08334 -17.15535 -17.10817 -16.81728 -16.26117 -16.15868 -15.83209 -15.45466 -15.31758 -15.03499 -14.91219 -14.51169 -14.32291 -14.11372 -13.79509 -13.29519 -13.13766 -12.63125 -12.59382 -12.45160 -12.31253 -12.26872 -12.04861 -11.60280 -11.49123 -11.23654 -10.84019 -10.63147 -10.22146 -10.01613 -9.90395 -9.62984 -9.59376 -9.14557 -8.80626 -8.07733 -7.57831 -6.28226 -4.31862 0.11635 0.27452 1.94730 2.38574 2.63155 2.73574 3.11822 3.13710 3.21468 3.22174 3.43165 3.56384 3.61714 3.78409 4.03770 4.19672 4.26227 4.36971 4.88397 4.99486 5.07651 5.23055 5.25843 5.32393 5.38256 5.56641 5.81116 5.92299 6.00201 6.08291 6.31097 6.38263 6.46758 6.53461 6.68487 6.95612 7.24472 7.25939 7.42749 7.79938 7.95184 8.28432 8.48177 8.77264 9.26558 10.84209 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.019644 B = 0.002609 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.010796 B =10727.728880 C =11179.572862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.097 3.903 3 C -0.286 4.286 4 C 0.265 3.735 5 N -0.616 5.616 6 C 0.573 3.427 7 O -0.489 6.489 8 C -0.181 4.181 9 C 0.160 3.840 10 F -0.116 7.116 11 C -0.148 4.148 12 C -0.070 4.070 13 C 0.065 3.935 14 O -0.480 6.480 15 C 0.143 3.857 16 F -0.109 7.109 17 N -0.312 5.312 18 N -0.314 5.314 19 C 0.231 3.769 20 C -0.543 4.543 21 H 0.081 0.919 22 C 0.079 3.921 23 N -0.886 5.886 24 Si 0.872 3.128 25 H -0.270 1.270 26 H -0.279 1.279 27 H -0.263 1.263 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.413 0.587 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.397 0.603 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.715 19.295 8.279 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.033 4.033 3 C -0.316 4.316 4 C 0.012 3.988 5 N -0.263 5.263 6 C 0.355 3.645 7 O -0.361 6.361 8 C -0.187 4.187 9 C 0.140 3.860 10 F -0.094 7.094 11 C -0.167 4.167 12 C -0.088 4.088 13 C 0.019 3.981 14 O -0.290 6.290 15 C 0.122 3.878 16 F -0.087 7.087 17 N -0.142 5.142 18 N -0.096 5.096 19 C 0.112 3.888 20 C -0.581 4.581 21 H 0.099 0.901 22 C -0.125 4.125 23 N -0.522 5.522 24 Si 0.698 3.302 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.188 1.188 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.178 0.822 32 H 0.249 0.751 33 H 0.174 0.826 34 H 0.174 0.826 35 H 0.254 0.746 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.107 18.755 8.199 24.859 hybrid contribution 0.004 -0.844 0.359 0.917 sum 14.110 17.911 8.558 24.354 Atomic orbital electron populations 1.20423 0.87635 1.04318 1.02573 1.21066 0.95015 0.86830 1.00437 1.21260 0.89593 0.99953 1.20820 1.18886 0.86956 0.89566 1.03375 1.42296 1.08021 1.04456 1.71492 1.17519 0.88173 0.81301 0.77462 1.90798 1.25019 1.73832 1.46448 1.19742 0.99984 1.06476 0.92465 1.17284 0.92711 0.96113 0.79908 1.91617 1.84751 1.88570 1.44463 1.21059 0.95764 0.99551 1.00316 1.21314 0.99793 0.97991 0.89732 1.18230 0.94232 0.98271 0.87413 1.84941 1.58004 1.50588 1.35506 1.17752 0.93691 0.95806 0.80514 1.91625 1.84646 1.88601 1.43823 1.77267 0.99531 1.08359 1.29062 1.48557 1.01151 1.07123 1.52788 1.20024 0.95358 0.73598 0.99790 1.21177 1.47527 0.99074 0.90302 0.90061 1.24809 0.94448 0.97443 0.95789 1.69871 1.45517 1.18370 1.18482 0.86904 0.79468 0.81020 0.82777 1.19569 1.20475 1.18783 0.90954 0.89732 0.90256 0.82151 0.75130 0.82593 0.82597 0.74602 0.93130 0.93533 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.89 36.01 0.36 -1.17 16 2 C 0.10 2.03 6.92 -82.28 -0.57 1.46 16 3 C -0.29 -5.92 9.52 -39.83 -0.38 -6.30 16 4 C 0.26 5.45 8.11 -154.44 -1.25 4.20 16 5 N -0.62 -10.06 5.44 -12.08 -0.07 -10.13 16 6 C 0.57 9.08 6.50 -12.47 -0.08 9.00 16 7 O -0.49 -9.29 14.23 5.28 0.08 -9.21 16 8 C -0.18 -2.14 5.64 -104.88 -0.59 -2.73 16 9 C 0.16 1.53 7.29 -38.97 -0.28 1.25 16 10 F -0.12 -1.30 16.83 2.25 0.04 -1.26 16 11 C -0.15 -0.87 10.00 -39.58 -0.40 -1.26 16 12 C -0.07 -0.36 9.97 -39.39 -0.39 -0.75 16 13 C 0.06 0.50 6.70 -39.26 -0.26 0.24 16 14 O -0.48 -3.26 13.36 -19.78 -0.26 -3.52 16 15 C 0.14 1.55 7.30 -38.83 -0.28 1.27 16 16 F -0.11 -1.45 16.67 2.25 0.04 -1.41 16 17 N -0.31 -7.14 12.59 31.43 0.40 -6.74 16 18 N -0.31 -7.31 3.59 -58.33 -0.21 -7.52 16 19 C 0.23 5.55 4.88 -5.19 -0.03 5.52 16 20 C -0.54 -15.16 9.94 -34.44 -0.34 -15.51 16 21 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 22 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 23 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 24 Si 0.87 20.02 27.47 -169.99 -4.67 15.35 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.16 3.25 5.91 -52.49 -0.31 2.94 16 32 H 0.41 5.48 8.81 -40.82 -0.36 5.12 16 33 H 0.16 0.48 8.06 -52.49 -0.42 0.06 16 34 H 0.16 0.33 8.06 -52.49 -0.42 -0.09 16 35 H 0.40 0.76 9.06 45.56 0.41 1.17 16 36 H 0.05 1.22 7.20 -51.93 -0.37 0.85 16 37 H 0.05 1.02 7.07 -51.93 -0.37 0.65 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -36.09 347.55 -5.93 -42.02 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -2.68 Total: 5.36 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -4.60 Total: -2.68 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.89 Total: -49.88 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.19 Total: -12.73 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.08 Total: -2.67 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.35 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.09 -5.93 -42.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572564142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.821 kcal (2) G-P(sol) polarization free energy of solvation -36.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds