Wall clock time and date at job start Tue Mar 31 2020 19:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40092 * 125.97365 * 180.13104 * 4 3 2 6 6 C 1.34773 * 120.00080 * 0.31318 * 5 4 3 7 7 O 1.21595 * 120.00092 * 0.02562 * 6 5 4 8 8 C 1.47541 * 119.99842 * 179.97438 * 6 5 4 9 9 C 1.39948 * 120.16471 * 269.99809 * 8 6 5 10 10 F 1.35103 * 120.04411 * 0.02562 * 9 8 6 11 11 C 1.38157 * 119.90700 * 179.97438 * 9 8 6 12 12 C 1.38324 * 120.24064 * 0.02562 * 11 9 8 13 13 C 1.38665 * 120.33153 * 359.97438 * 12 11 9 14 14 O 1.36011 * 119.95441 * 180.02562 * 13 12 11 15 15 C 1.38693 * 120.08796 * 359.74553 * 13 12 11 16 16 F 1.35101 * 120.12114 * 180.27914 * 15 13 12 17 17 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46503 * 125.97339 * 359.97438 * 18 2 1 20 20 C 1.50699 * 109.46808 * 90.00128 * 19 18 2 21 21 H 1.07995 * 120.00443 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99491 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99834 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00328 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47140 * 89.99413 * 24 22 20 26 26 H 1.48492 * 109.47014 * 209.99919 * 24 22 20 27 27 H 1.48502 * 109.46845 * 329.99556 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 32 32 H 0.97004 * 119.99910 * 180.31575 * 5 4 3 33 33 H 1.07997 * 119.87471 * 180.02562 * 11 9 8 34 34 H 1.08001 * 119.83309 * 180.02562 * 12 11 9 35 35 H 0.96696 * 114.00363 * 89.99981 * 14 13 12 36 36 H 1.08997 * 109.46890 * 209.99586 * 19 18 2 37 37 H 1.08999 * 109.46830 * 329.99997 * 19 18 2 38 38 H 0.96999 * 120.00540 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7730 1.4744 0.0073 6 6 4.6363 2.8152 0.0141 7 8 3.5270 3.3132 0.0175 8 6 5.8326 3.6787 0.0186 9 6 6.4027 4.0841 1.2307 10 9 5.8586 3.6849 2.4011 11 6 7.5232 4.8923 1.2287 12 6 8.0838 5.3030 0.0327 13 6 7.5271 4.9072 -1.1740 14 8 8.0850 5.3150 -2.3455 15 6 6.4057 4.0912 -1.1880 16 9 5.8661 3.7005 -2.3634 17 7 3.6337 -0.6578 -0.0035 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0129 20 6 1.6945 -2.9551 -1.4362 21 1 1.9102 -2.2832 -2.2537 22 6 1.2769 -4.2435 -1.6946 23 7 1.1409 -4.6540 -2.9366 24 14 0.9031 -5.4056 -0.2806 25 1 -0.5279 -5.2821 0.0964 26 1 1.1861 -6.8018 -0.6994 27 1 1.7541 -5.0564 0.8852 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 -0.0006 32 1 5.6580 1.0772 0.0049 33 1 7.9629 5.2045 2.1644 34 1 8.9600 5.9344 0.0388 35 1 8.7630 4.7165 -2.6877 36 1 2.5847 -3.1073 0.4973 37 1 0.8914 -2.5584 0.5009 38 1 0.8467 -5.5602 -3.1185 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572564142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:58 Heat of formation + Delta-G solvation = -77.147815 kcal Electronic energy + Delta-G solvation = -28084.317538 eV Core-core repulsion = 23564.453241 eV Total energy + Delta-G solvation = -4519.864298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.32105 -50.25766 -42.49812 -41.15743 -40.20081 -37.62929 -36.56013 -35.32482 -33.50392 -32.88825 -32.32787 -30.54958 -29.12409 -27.98641 -26.13536 -24.47223 -23.99570 -22.99406 -21.50559 -21.19609 -19.73602 -19.32063 -19.26121 -18.87374 -18.19534 -18.02276 -17.45569 -17.09895 -16.95403 -16.62809 -16.56807 -16.20025 -15.98690 -15.74164 -15.43264 -15.42303 -14.99425 -14.70365 -14.51092 -13.96957 -13.85472 -13.79901 -13.71585 -13.33497 -13.25452 -12.93358 -12.90966 -12.58160 -12.35746 -12.10108 -11.86478 -11.70095 -11.57075 -11.31016 -10.91217 -10.35699 -9.78750 -9.72771 -9.26789 -8.42426 -6.54427 -0.55981 -0.34513 0.57821 1.06058 1.18291 1.34290 1.37754 1.47399 1.94551 1.97872 2.09145 2.25430 2.44840 2.86574 2.89767 3.09054 3.20350 3.57101 3.70684 3.76113 3.98887 4.25431 4.34196 4.47609 4.50798 4.59948 4.65303 4.72650 4.76093 4.81252 4.84215 4.88319 5.02064 5.13085 5.19889 5.38845 5.69805 5.92179 5.96589 6.30179 6.49121 6.62573 6.63019 6.84952 7.09606 8.74363 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.019644 B = 0.002609 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.010796 B =10727.728880 C =11179.572862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.096 3.904 3 C -0.301 4.301 4 C 0.269 3.731 5 N -0.611 5.611 6 C 0.573 3.427 7 O -0.527 6.527 8 C -0.200 4.200 9 C 0.145 3.855 10 F -0.131 7.131 11 C -0.121 4.121 12 C -0.044 4.044 13 C 0.078 3.922 14 O -0.490 6.490 15 C 0.114 3.886 16 F -0.134 7.134 17 N -0.347 5.347 18 N -0.338 5.338 19 C 0.241 3.759 20 C -0.553 4.553 21 H 0.022 0.978 22 C 0.022 3.978 23 N -0.937 5.937 24 Si 0.952 3.048 25 H -0.249 1.249 26 H -0.278 1.278 27 H -0.244 1.244 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.164 0.836 32 H 0.426 0.574 33 H 0.195 0.805 34 H 0.202 0.798 35 H 0.419 0.581 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.367 20.716 10.827 28.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 C -0.331 4.331 4 C 0.015 3.985 5 N -0.259 5.259 6 C 0.359 3.641 7 O -0.401 6.401 8 C -0.206 4.206 9 C 0.125 3.875 10 F -0.109 7.109 11 C -0.139 4.139 12 C -0.062 4.062 13 C 0.032 3.968 14 O -0.304 6.304 15 C 0.093 3.907 16 F -0.113 7.113 17 N -0.177 5.177 18 N -0.120 5.120 19 C 0.121 3.879 20 C -0.592 4.592 21 H 0.041 0.959 22 C -0.178 4.178 23 N -0.575 5.575 24 Si 0.773 3.227 25 H -0.173 1.173 26 H -0.203 1.203 27 H -0.167 1.167 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.182 0.818 32 H 0.264 0.736 33 H 0.212 0.788 34 H 0.219 0.781 35 H 0.280 0.720 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.805 20.199 10.742 27.806 hybrid contribution -0.363 -1.087 -0.555 1.274 sum 15.442 19.112 10.186 26.598 Atomic orbital electron populations 1.20580 0.84752 1.04620 1.04737 1.21773 0.96886 0.86104 0.98666 1.21438 0.89919 1.00164 1.21621 1.19236 0.88420 0.89380 1.01447 1.42459 1.07553 1.04614 1.71319 1.18249 0.89248 0.81056 0.75575 1.90749 1.27076 1.74375 1.47910 1.19487 0.99496 1.07382 0.94193 1.17581 0.94026 0.97420 0.78507 1.91581 1.85283 1.88989 1.45039 1.21500 0.93344 0.96796 1.02291 1.21794 0.99982 0.96513 0.87910 1.18376 0.92949 0.96698 0.88796 1.84889 1.58774 1.51260 1.35434 1.18112 0.95401 0.97899 0.79300 1.91552 1.85376 1.89240 1.45112 1.77178 0.99997 1.09502 1.31059 1.48508 1.01681 1.07279 1.54581 1.19838 0.96617 0.74279 0.97141 1.21240 1.48031 0.98823 0.91065 0.95924 1.25850 0.93621 0.99230 0.99079 1.70035 1.46748 1.19277 1.21474 0.85662 0.80570 0.77626 0.78888 1.17308 1.20304 1.16723 0.87684 0.91005 0.88305 0.81823 0.73642 0.78751 0.78103 0.72012 0.93034 0.90645 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.90 9.89 71.24 0.70 -2.20 16 2 C 0.10 4.07 6.92 41.38 0.29 4.36 16 3 C -0.30 -12.90 9.52 22.11 0.21 -12.69 16 4 C 0.27 11.55 8.11 133.35 1.08 12.63 16 5 N -0.61 -20.95 5.44 -310.38 -1.69 -22.64 16 6 C 0.57 19.02 6.50 86.70 0.56 19.58 16 7 O -0.53 -20.99 14.23 -4.02 -0.06 -21.05 16 8 C -0.20 -4.77 5.64 -20.03 -0.11 -4.89 16 9 C 0.14 2.56 7.29 22.67 0.17 2.73 16 10 F -0.13 -2.85 16.83 44.97 0.76 -2.09 16 11 C -0.12 -0.92 10.00 22.27 0.22 -0.69 16 12 C -0.04 -0.24 9.97 22.39 0.22 -0.02 16 13 C 0.08 1.00 6.70 22.48 0.15 1.15 16 14 O -0.49 -5.34 13.36 -93.68 -1.25 -6.59 16 15 C 0.11 2.44 7.30 22.76 0.17 2.61 16 16 F -0.13 -3.76 16.67 44.97 0.75 -3.01 16 17 N -0.35 -16.51 12.59 -54.48 -0.69 -17.20 16 18 N -0.34 -16.13 3.59 -338.45 -1.22 -17.34 16 19 C 0.24 11.60 4.88 85.63 0.42 12.02 16 20 C -0.55 -32.12 9.94 25.60 0.25 -31.87 16 21 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 22 C 0.02 1.25 5.47 84.66 0.46 1.71 16 23 N -0.94 -57.40 13.96 21.45 0.30 -57.10 16 24 Si 0.95 40.84 27.47 68.60 1.88 42.72 16 25 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 26 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 27 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 28 H 0.10 2.74 8.14 -2.39 -0.02 2.73 16 29 H 0.07 2.54 7.71 -2.39 -0.02 2.52 16 30 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 31 H 0.16 6.87 5.91 -2.91 -0.02 6.86 16 32 H 0.43 11.91 8.81 -92.71 -0.82 11.10 16 33 H 0.20 0.06 8.06 -2.91 -0.02 0.04 16 34 H 0.20 -0.57 8.06 -2.91 -0.02 -0.59 16 35 H 0.42 0.46 9.06 -74.06 -0.67 -0.21 16 36 H 0.05 2.46 7.20 -2.39 -0.02 2.44 16 37 H 0.08 3.18 7.07 -2.39 -0.02 3.17 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -85.30 347.55 3.21 -82.09 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -0.37 Total: 17.78 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 4.80 Total: 4.43 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -3.29 Total: -114.28 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -1.31 Total: -27.64 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 1.51 Total: -5.10 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.88 Total: 42.72 kcal Total: -85.30 3.21 -82.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572564142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.940 kcal (2) G-P(sol) polarization free energy of solvation -85.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds