Wall clock time and date at job start Tue Mar 31 2020 20:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99887 * 2 1 4 4 C 1.39566 * 120.00662 * 179.97438 * 2 1 3 5 5 N 1.31092 * 125.53184 * 180.02562 * 4 2 1 6 6 N 1.40411 * 106.95925 * 179.97438 * 5 4 2 7 7 H 0.97002 * 126.76367 * 179.97438 * 6 5 4 8 8 C 1.34923 * 106.46149 * 0.02562 * 6 5 4 9 9 N 1.38299 * 126.00546 * 180.02562 * 8 6 5 10 10 S 1.65601 * 119.99775 * 195.02572 * 9 8 6 11 11 O 1.42101 * 106.40110 * 178.53874 * 10 9 8 12 12 O 1.42106 * 106.40060 * 311.45766 * 10 9 8 13 13 C 1.76196 * 107.21998 * 64.99410 * 10 9 8 14 14 C 1.38648 * 119.87968 * 269.72973 * 13 10 9 15 15 C 1.38618 * 120.50217 * 179.72524 * 14 13 10 16 16 C 1.37638 * 120.24505 * 0.54587 * 15 14 13 17 17 C 1.40694 * 119.74831 * 359.72983 * 16 15 14 18 18 C 1.41395 * 120.24530 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99453 * 150.21744 * 18 17 16 20 20 C 1.39935 * 120.00404 * 330.22024 * 18 17 16 21 21 N 1.30820 * 120.00590 * 161.72515 * 20 18 17 22 22 Si 1.86804 * 119.99768 * 341.72987 * 20 18 17 23 23 H 1.48501 * 109.47383 * 95.40841 * 22 20 18 24 24 H 1.48505 * 109.47082 * 215.40952 * 22 20 18 25 25 H 1.48500 * 109.47130 * 335.40785 * 22 20 18 26 26 C 1.37605 * 119.86960 * 89.99990 * 13 10 9 27 27 N 1.31617 * 107.98671 * 359.97438 * 8 6 5 28 28 H 1.09003 * 109.46843 * 239.99815 * 1 2 3 29 29 H 1.08997 * 109.47336 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46838 * 120.00843 * 1 2 3 31 31 H 1.08999 * 109.47238 * 270.00370 * 3 2 1 32 32 H 1.09011 * 109.46967 * 29.99827 * 3 2 1 33 33 H 1.09002 * 109.47492 * 149.99354 * 3 2 1 34 34 H 0.96997 * 120.00198 * 15.02113 * 9 8 6 35 35 H 1.08004 * 119.75215 * 359.97438 * 14 13 10 36 36 H 1.07999 * 119.87764 * 180.25929 * 15 14 13 37 37 H 1.08002 * 120.12748 * 179.75173 * 16 15 14 38 38 H 0.96994 * 120.00558 * 180.02562 * 21 20 18 39 39 H 1.07993 * 120.13223 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1630 -1.2086 0.0005 5 7 3.4678 -1.3348 0.0011 6 7 3.7461 -2.7111 0.0021 7 1 4.6229 -3.1261 0.0023 8 6 2.5537 -3.3423 0.0015 9 7 2.3586 -4.7115 0.0027 10 16 0.8709 -5.3361 -0.3700 11 8 1.0041 -6.7498 -0.3155 12 8 -0.0739 -4.6139 0.4080 13 6 0.5421 -4.9317 -2.0531 14 6 -0.1103 -3.7486 -2.3645 15 6 -0.3704 -3.4150 -3.6846 16 6 0.0074 -4.2624 -4.7012 17 6 0.6649 -5.4684 -4.3968 18 6 1.0581 -6.3465 -5.4329 19 1 1.9260 -6.9768 -5.3062 20 6 0.3230 -6.3988 -6.6225 21 7 0.8564 -6.9165 -7.6990 22 14 -1.4201 -5.7291 -6.6734 23 1 -1.3990 -4.3310 -7.1735 24 1 -2.2459 -6.5667 -7.5799 25 1 -2.0013 -5.7573 -5.3071 26 6 0.9289 -5.7941 -3.0533 27 7 1.6088 -2.4261 0.0008 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5140 -0.8899 31 1 2.3791 1.5835 -1.0276 32 1 1.6083 2.0285 0.5139 33 1 3.1499 1.1385 0.5139 34 1 3.0931 -5.3059 0.2217 35 1 -0.4145 -3.0799 -1.5729 36 1 -0.8755 -2.4888 -3.9159 37 1 -0.1998 -4.0024 -5.7288 38 1 0.3470 -6.9524 -8.5236 39 1 1.4334 -6.7170 -2.8083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589594241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:05 Heat of formation + Delta-G solvation = 61.792333 kcal Electronic energy + Delta-G solvation = -27176.144964 eV Core-core repulsion = 23248.438701 eV Total energy + Delta-G solvation = -3927.706263 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.95690 -37.94789 -37.01184 -36.83785 -35.57561 -35.15630 -33.78426 -32.17676 -30.73513 -30.20995 -29.78358 -27.95004 -25.38882 -25.15971 -22.47151 -22.44479 -20.94140 -20.75812 -19.13675 -18.99604 -18.10289 -17.15265 -16.58631 -16.35625 -16.04141 -15.86744 -15.35599 -15.09765 -14.71383 -14.43526 -14.35280 -13.86983 -13.21585 -12.89368 -12.72263 -12.57781 -12.45281 -12.26086 -12.09922 -11.98031 -11.85154 -11.79327 -11.69087 -11.55745 -11.53476 -11.04993 -10.80732 -10.50665 -10.34234 -10.02972 -9.83939 -9.76952 -9.33578 -9.13282 -8.32431 -7.87875 -7.81546 -7.08627 -4.64615 0.47549 1.76440 1.84710 2.37339 2.42092 2.59678 2.98981 3.10972 3.15768 3.20220 3.49631 3.84856 3.88967 4.17782 4.40804 4.69116 4.92763 5.09312 5.16969 5.34614 5.40987 5.61434 5.72180 5.76750 5.82141 5.97457 6.01692 6.09754 6.19606 6.38992 6.43758 6.59919 6.84508 6.88676 7.05588 7.19683 7.23619 7.38161 7.40560 7.59350 7.75996 8.16967 8.26203 8.40773 8.61139 9.93531 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.004165 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.055479 B = 6720.282560 C = 7600.976530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.596 5.596 3 C 0.111 3.889 4 C 0.502 3.498 5 N -0.366 5.366 6 N -0.494 5.494 7 H 0.439 0.561 8 C 0.549 3.451 9 N -1.016 6.016 10 S 2.684 3.316 11 O -0.952 6.952 12 O -0.925 6.925 13 C -0.624 4.624 14 C -0.129 4.129 15 C -0.099 4.099 16 C -0.188 4.188 17 C 0.072 3.928 18 C -0.447 4.447 19 H 0.094 0.906 20 C 0.085 3.915 21 N -0.802 5.802 22 Si 0.904 3.096 23 H -0.269 1.269 24 H -0.286 1.286 25 H -0.243 1.243 26 C -0.108 4.108 27 N -0.561 5.561 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.434 0.566 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.287 0.713 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 10.628 12.473 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.322 5.322 3 C -0.032 4.032 4 C 0.133 3.867 5 N -0.207 5.207 6 N -0.219 5.219 7 H 0.284 0.716 8 C 0.179 3.821 9 N -0.767 5.767 10 S 2.780 3.220 11 O -0.942 6.942 12 O -0.915 6.915 13 C -0.717 4.717 14 C -0.151 4.151 15 C -0.118 4.118 16 C -0.208 4.208 17 C 0.067 3.933 18 C -0.475 4.475 19 H 0.112 0.888 20 C -0.135 4.135 21 N -0.426 5.426 22 Si 0.730 3.270 23 H -0.195 1.195 24 H -0.213 1.213 25 H -0.166 1.166 26 C -0.129 4.129 27 N -0.303 5.303 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.271 0.729 35 H 0.142 0.858 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.358 10.752 12.792 16.876 hybrid contribution 0.436 -0.340 -1.024 1.164 sum 2.794 10.412 11.768 15.959 Atomic orbital electron populations 1.21577 0.77186 1.01689 1.02728 1.45186 1.05096 0.99802 1.82076 1.21572 0.96955 0.83343 1.01341 1.19934 0.86708 0.86350 0.93746 1.78132 1.12934 0.90212 1.39447 1.47485 1.07705 1.04100 1.62576 0.71566 1.19470 0.83858 0.85020 0.93708 1.53328 1.34501 1.07313 1.81574 1.02310 0.71550 0.72719 0.75425 1.93607 1.84679 1.27961 1.87966 1.93594 1.56512 1.72958 1.68403 1.29635 1.15779 1.06110 1.20147 1.20266 1.02589 0.95651 0.96553 1.20737 0.99627 0.98360 0.93065 1.21366 1.06068 0.95524 0.97837 1.17752 0.91256 0.91932 0.92313 1.19471 1.12101 1.19727 0.96239 0.88767 1.26129 1.00724 0.92584 0.94052 1.69671 1.38020 1.34082 1.00822 0.86406 0.81675 0.78499 0.80401 1.19455 1.21281 1.16573 1.20846 1.02620 0.97336 0.92121 1.70554 1.28745 0.97211 1.33752 0.92164 0.90948 0.92070 0.93367 0.91284 0.91139 0.72941 0.85759 0.87883 0.87614 0.90221 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.23 10.50 59.85 0.63 1.86 16 2 N -0.60 -7.59 3.41 -191.52 -0.65 -8.24 16 3 C 0.11 1.03 10.55 59.85 0.63 1.66 16 4 C 0.50 7.80 8.36 -321.22 -2.68 5.12 16 5 N -0.37 -5.37 12.10 29.98 0.36 -5.01 16 6 N -0.49 -6.21 7.46 30.02 0.22 -5.99 16 7 H 0.44 3.72 8.96 -182.36 -1.63 2.08 16 8 C 0.55 8.08 8.75 -320.88 -2.81 5.27 16 9 N -1.02 -13.41 5.84 30.03 0.18 -13.23 16 10 S 2.68 46.65 5.58 -107.50 -0.60 46.05 16 11 O -0.95 -17.86 17.27 -57.17 -0.99 -18.84 16 12 O -0.93 -17.83 16.19 -57.17 -0.93 -18.75 16 13 C -0.62 -12.80 5.89 -39.66 -0.23 -13.03 16 14 C -0.13 -2.67 9.35 -39.29 -0.37 -3.03 16 15 C -0.10 -2.08 10.02 -39.66 -0.40 -2.47 16 16 C -0.19 -4.38 7.18 -38.87 -0.28 -4.65 16 17 C 0.07 1.75 5.10 -106.82 -0.55 1.21 16 18 C -0.45 -11.67 9.57 -37.75 -0.36 -12.03 16 19 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 20 C 0.08 2.15 5.40 -17.35 -0.09 2.06 16 21 N -0.80 -20.71 13.93 55.55 0.77 -19.94 16 22 Si 0.90 20.05 24.52 -169.99 -4.17 15.89 16 23 H -0.27 -5.72 6.71 56.52 0.38 -5.34 16 24 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.24 -5.54 6.86 56.52 0.39 -5.15 16 26 C -0.11 -2.43 9.26 -38.87 -0.36 -2.79 16 27 N -0.56 -9.39 9.07 -14.37 -0.13 -9.52 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.55 7.79 -51.93 -0.40 0.15 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.45 7.92 -51.92 -0.41 0.04 16 33 H 0.07 0.68 7.66 -51.93 -0.40 0.28 16 34 H 0.43 3.81 8.95 -34.47 -0.31 3.51 16 35 H 0.12 2.41 7.16 -52.48 -0.38 2.04 16 36 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.11 2.42 4.73 -52.49 -0.25 2.17 16 38 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 39 H 0.12 2.51 7.60 -52.49 -0.40 2.12 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -33.44 345.59 -13.05 -46.49 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.46 Total: 6.72 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -6.87 Total: -20.83 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: 0.75 Total: -61.93 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.91 Total: -37.59 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.17 Total: 15.89 kcal Atomic # 16 Polarization: 46.65 SS G_CDS: -0.60 Total: 46.05 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.44 -13.05 -46.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589594241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.282 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds