Wall clock time and date at job start Tue Mar 31 2020 20:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99887 * 2 1 4 4 C 1.39566 * 120.00662 * 179.97438 * 2 1 3 5 5 N 1.31092 * 125.53184 * 180.02562 * 4 2 1 6 6 N 1.40411 * 106.95925 * 179.97438 * 5 4 2 7 7 H 0.97002 * 126.76367 * 179.97438 * 6 5 4 8 8 C 1.34923 * 106.46149 * 0.02562 * 6 5 4 9 9 N 1.38299 * 126.00546 * 180.02562 * 8 6 5 10 10 S 1.65601 * 119.99775 * 195.02572 * 9 8 6 11 11 O 1.42101 * 106.40110 * 178.53874 * 10 9 8 12 12 O 1.42106 * 106.40060 * 311.45766 * 10 9 8 13 13 C 1.76196 * 107.21998 * 64.99410 * 10 9 8 14 14 C 1.38648 * 119.87968 * 269.72973 * 13 10 9 15 15 C 1.38618 * 120.50217 * 179.72524 * 14 13 10 16 16 C 1.37638 * 120.24505 * 0.54587 * 15 14 13 17 17 C 1.40694 * 119.74831 * 359.72983 * 16 15 14 18 18 C 1.41395 * 120.24530 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99453 * 150.21744 * 18 17 16 20 20 C 1.39935 * 120.00404 * 330.22024 * 18 17 16 21 21 N 1.30820 * 120.00590 * 161.72515 * 20 18 17 22 22 Si 1.86804 * 119.99768 * 341.72987 * 20 18 17 23 23 H 1.48501 * 109.47383 * 95.40841 * 22 20 18 24 24 H 1.48505 * 109.47082 * 215.40952 * 22 20 18 25 25 H 1.48500 * 109.47130 * 335.40785 * 22 20 18 26 26 C 1.37605 * 119.86960 * 89.99990 * 13 10 9 27 27 N 1.31617 * 107.98671 * 359.97438 * 8 6 5 28 28 H 1.09003 * 109.46843 * 239.99815 * 1 2 3 29 29 H 1.08997 * 109.47336 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46838 * 120.00843 * 1 2 3 31 31 H 1.08999 * 109.47238 * 270.00370 * 3 2 1 32 32 H 1.09011 * 109.46967 * 29.99827 * 3 2 1 33 33 H 1.09002 * 109.47492 * 149.99354 * 3 2 1 34 34 H 0.96997 * 120.00198 * 15.02113 * 9 8 6 35 35 H 1.08004 * 119.75215 * 359.97438 * 14 13 10 36 36 H 1.07999 * 119.87764 * 180.25929 * 15 14 13 37 37 H 1.08002 * 120.12748 * 179.75173 * 16 15 14 38 38 H 0.96994 * 120.00558 * 180.02562 * 21 20 18 39 39 H 1.07993 * 120.13223 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1630 -1.2086 0.0005 5 7 3.4678 -1.3348 0.0011 6 7 3.7461 -2.7111 0.0021 7 1 4.6229 -3.1261 0.0023 8 6 2.5537 -3.3423 0.0015 9 7 2.3586 -4.7115 0.0027 10 16 0.8709 -5.3361 -0.3700 11 8 1.0041 -6.7498 -0.3155 12 8 -0.0739 -4.6139 0.4080 13 6 0.5421 -4.9317 -2.0531 14 6 -0.1103 -3.7486 -2.3645 15 6 -0.3704 -3.4150 -3.6846 16 6 0.0074 -4.2624 -4.7012 17 6 0.6649 -5.4684 -4.3968 18 6 1.0581 -6.3465 -5.4329 19 1 1.9260 -6.9768 -5.3062 20 6 0.3230 -6.3988 -6.6225 21 7 0.8564 -6.9165 -7.6990 22 14 -1.4201 -5.7291 -6.6734 23 1 -1.3990 -4.3310 -7.1735 24 1 -2.2459 -6.5667 -7.5799 25 1 -2.0013 -5.7573 -5.3071 26 6 0.9289 -5.7941 -3.0533 27 7 1.6088 -2.4261 0.0008 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5140 -0.8899 31 1 2.3791 1.5835 -1.0276 32 1 1.6083 2.0285 0.5139 33 1 3.1499 1.1385 0.5139 34 1 3.0931 -5.3059 0.2217 35 1 -0.4145 -3.0799 -1.5729 36 1 -0.8755 -2.4888 -3.9159 37 1 -0.1998 -4.0024 -5.7288 38 1 0.3470 -6.9524 -8.5236 39 1 1.4334 -6.7170 -2.8083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589594241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:04 Heat of formation + Delta-G solvation = 40.782034 kcal Electronic energy + Delta-G solvation = -27177.056039 eV Core-core repulsion = 23248.438701 eV Total energy + Delta-G solvation = -3928.617338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.06025 -39.70657 -38.44193 -37.86994 -37.07324 -36.26777 -35.63712 -33.27891 -32.53915 -31.93370 -30.86250 -28.74827 -27.23327 -26.08326 -24.16104 -23.59705 -22.70264 -21.88448 -20.56396 -20.10903 -19.67323 -18.55387 -18.09224 -17.67880 -17.25669 -16.92728 -16.84421 -16.72039 -16.35646 -15.63546 -15.33796 -15.22747 -14.87817 -14.69227 -14.10259 -13.97747 -13.59904 -13.42426 -13.34263 -13.30504 -13.29173 -13.14839 -13.09798 -12.88231 -12.76442 -12.66034 -12.55130 -12.05374 -11.79001 -11.58345 -11.49909 -11.08264 -10.99507 -10.33341 -10.04862 -9.68408 -8.96580 -8.77436 -6.59033 -0.94534 0.13446 0.65006 0.65314 1.20448 1.22907 1.35712 1.43286 1.58402 2.01386 2.04967 2.32901 2.41601 2.58398 3.14060 3.29942 3.33558 3.96809 4.15425 4.29801 4.33994 4.44709 4.59194 4.65173 4.73780 4.77705 4.82220 4.90526 5.00813 5.04438 5.06258 5.11360 5.30443 5.41250 5.45367 5.63792 5.74900 5.97296 6.00275 6.23610 6.32031 6.39196 6.56640 6.70174 7.18652 8.11517 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.004165 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.055479 B = 6720.282560 C = 7600.976530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.599 5.599 3 C 0.108 3.892 4 C 0.485 3.515 5 N -0.374 5.374 6 N -0.477 5.477 7 H 0.456 0.544 8 C 0.539 3.461 9 N -0.998 5.998 10 S 2.722 3.278 11 O -0.964 6.964 12 O -0.938 6.938 13 C -0.635 4.635 14 C -0.117 4.117 15 C -0.102 4.102 16 C -0.197 4.197 17 C 0.053 3.947 18 C -0.484 4.484 19 H 0.064 0.936 20 C 0.051 3.949 21 N -0.842 5.842 22 Si 0.952 3.048 23 H -0.251 1.251 24 H -0.273 1.273 25 H -0.254 1.254 26 C -0.120 4.120 27 N -0.590 5.590 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.454 0.546 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.108 0.892 38 H 0.296 0.704 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 12.862 14.028 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.325 5.325 3 C -0.034 4.034 4 C 0.115 3.885 5 N -0.216 5.216 6 N -0.203 5.203 7 H 0.305 0.695 8 C 0.168 3.832 9 N -0.755 5.755 10 S 2.813 3.187 11 O -0.954 6.954 12 O -0.928 6.928 13 C -0.724 4.724 14 C -0.137 4.137 15 C -0.121 4.121 16 C -0.217 4.217 17 C 0.049 3.951 18 C -0.513 4.513 19 H 0.083 0.917 20 C -0.164 4.164 21 N -0.467 5.467 22 Si 0.775 3.225 23 H -0.176 1.176 24 H -0.199 1.199 25 H -0.178 1.178 26 C -0.141 4.141 27 N -0.333 5.333 28 H 0.068 0.932 29 H 0.127 0.873 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.295 0.705 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.693 12.992 14.316 19.406 hybrid contribution 0.743 -0.908 -1.261 1.722 sum 2.436 12.084 13.055 17.955 Atomic orbital electron populations 1.21671 0.76454 1.03751 1.01442 1.45601 1.05809 0.99808 1.81307 1.21757 0.97108 0.82638 1.01881 1.20367 0.87068 0.87010 0.94008 1.78083 1.12869 0.90985 1.39696 1.47394 1.08092 1.03455 1.61381 0.69484 1.19448 0.84462 0.85004 0.94237 1.52738 1.34343 1.07348 1.81095 1.01234 0.71784 0.71964 0.73675 1.93594 1.85238 1.28920 1.87634 1.93581 1.58047 1.73308 1.67851 1.30157 1.14783 1.05524 1.21969 1.20627 1.00682 0.95439 0.96978 1.21133 0.99120 0.99218 0.92648 1.21521 1.06041 0.95439 0.98695 1.17912 0.92033 0.92319 0.92807 1.19461 1.12599 1.21232 0.98002 0.91735 1.26743 1.03464 0.92765 0.93472 1.69694 1.39469 1.36058 1.01527 0.85678 0.77823 0.79095 0.79882 1.17633 1.19939 1.17782 1.20953 1.03067 0.98123 0.91991 1.70474 1.30098 0.98057 1.34663 0.93170 0.87287 0.93582 0.93108 0.88183 0.91741 0.70451 0.84165 0.84426 0.87446 0.89368 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.15 10.50 127.77 1.34 3.49 16 2 N -0.60 -13.89 3.41 -759.83 -2.59 -16.48 16 3 C 0.11 1.71 10.55 127.77 1.35 3.06 16 4 C 0.48 14.17 8.36 260.93 2.18 16.35 16 5 N -0.37 -10.29 12.10 -59.05 -0.71 -11.00 16 6 N -0.48 -10.99 7.46 -58.93 -0.44 -11.43 16 7 H 0.46 6.69 8.96 -213.12 -1.91 4.78 16 8 C 0.54 14.77 8.75 260.81 2.28 17.05 16 9 N -1.00 -24.33 5.84 -58.90 -0.34 -24.68 16 10 S 2.72 89.94 5.58 -56.49 -0.32 89.62 16 11 O -0.96 -34.77 17.27 -128.00 -2.21 -36.98 16 12 O -0.94 -34.28 16.19 -128.00 -2.07 -36.35 16 13 C -0.63 -25.24 5.89 22.22 0.13 -25.11 16 14 C -0.12 -4.56 9.35 22.46 0.21 -4.35 16 15 C -0.10 -4.07 10.02 22.22 0.22 -3.85 16 16 C -0.20 -9.01 7.18 22.73 0.16 -8.84 16 17 C 0.05 2.62 5.10 -21.29 -0.11 2.51 16 18 C -0.48 -26.34 9.57 23.46 0.22 -26.11 16 19 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 20 C 0.05 2.67 5.40 85.25 0.46 3.13 16 21 N -0.84 -44.85 13.93 21.82 0.30 -44.55 16 22 Si 0.95 41.14 24.52 68.60 1.68 42.83 16 23 H -0.25 -10.06 6.71 99.48 0.67 -9.39 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.25 -11.32 6.86 99.48 0.68 -10.64 16 26 C -0.12 -5.43 9.26 22.73 0.21 -5.22 16 27 N -0.59 -18.64 9.07 -199.38 -1.81 -20.45 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.11 1.28 7.79 -2.39 -0.02 1.26 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.10 0.95 7.92 -2.38 -0.02 0.93 16 33 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 34 H 0.45 6.94 8.95 -96.75 -0.87 6.08 16 35 H 0.14 5.07 7.16 -2.91 -0.02 5.05 16 36 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 37 H 0.11 4.81 4.73 -2.91 -0.01 4.79 16 38 H 0.30 14.12 8.30 -92.71 -0.77 13.35 16 39 H 0.12 5.29 7.60 -2.91 -0.02 5.27 16 Total: -1.00 -72.65 345.59 -1.54 -74.20 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -1.71 Total: 23.16 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 8.67 Total: -27.89 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -5.59 Total: -128.58 kcal Atomic # 8 Polarization: -69.05 SS G_CDS: -4.28 Total: -73.33 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.68 Total: 42.83 kcal Atomic # 16 Polarization: 89.94 SS G_CDS: -0.32 Total: 89.62 kcal Total: -72.65 -1.54 -74.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589594241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.980 kcal (2) G-P(sol) polarization free energy of solvation -72.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds