Wall clock time and date at job start Tue Mar 31 2020 20:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00149 * 2 1 4 4 C 1.53002 * 109.46946 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47219 * 65.00028 * 4 3 2 6 6 C 1.46493 * 120.00136 * 274.70911 * 5 4 3 7 7 C 1.50697 * 109.47373 * 269.99802 * 6 5 4 8 8 H 1.08002 * 119.99618 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00284 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99871 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99918 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47313 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47001 * 120.00542 * 11 9 7 14 14 H 1.48504 * 109.47221 * 240.00283 * 11 9 7 15 15 C 1.34783 * 119.99579 * 94.70804 * 5 4 3 16 16 O 1.21721 * 119.99180 * 185.54568 * 15 5 4 17 17 C 1.46568 * 120.00133 * 5.54460 * 15 5 4 18 18 C 1.40541 * 126.57831 * 54.58864 * 17 15 5 19 19 N 1.30748 * 108.73776 * 180.02562 * 18 17 15 20 20 N 1.40014 * 109.60520 * 359.97438 * 19 18 17 21 21 C 1.36273 * 132.01090 * 179.97438 * 20 19 18 22 22 C 1.35176 * 120.73199 * 180.02562 * 21 20 19 23 23 C 1.40153 * 120.32694 * 359.75320 * 22 21 20 24 24 C 1.36539 * 119.40114 * 0.49807 * 23 22 21 25 25 Cl 1.73605 * 120.38674 * 179.77978 * 24 23 22 26 26 C 1.36557 * 107.90397 * 0.02562 * 20 19 18 27 27 H 1.08999 * 109.46929 * 299.99851 * 1 2 3 28 28 H 1.08997 * 109.47051 * 59.99948 * 1 2 3 29 29 H 1.09002 * 109.46810 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46865 * 60.00263 * 3 2 1 31 31 H 1.08996 * 109.46943 * 299.99927 * 3 2 1 32 32 H 1.09001 * 109.47414 * 305.00184 * 4 3 2 33 33 H 1.08998 * 109.46932 * 185.00073 * 4 3 2 34 34 H 1.09002 * 109.47149 * 30.00184 * 6 5 4 35 35 H 1.08997 * 109.47079 * 149.99687 * 6 5 4 36 36 H 0.97001 * 120.00222 * 179.97438 * 10 9 7 37 37 H 1.08000 * 125.63501 * 0.05112 * 18 17 15 38 38 H 1.08001 * 119.62939 * 0.02949 * 21 20 19 39 39 H 1.07996 * 119.83286 * 179.97438 * 22 21 20 40 40 H 1.08007 * 120.29732 * 180.25749 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0075 -0.8956 -1.3736 7 6 5.3561 -1.4080 -0.9382 8 1 6.1143 -0.7157 -0.6030 9 6 5.6218 -2.7607 -0.9665 10 7 4.6983 -3.6037 -1.3742 11 14 7.2932 -3.3958 -0.4260 12 1 8.1478 -2.2531 -0.0150 13 1 7.1229 -4.3237 0.7209 14 1 7.9375 -4.1159 -1.5537 15 6 4.3543 1.3356 -2.2894 16 8 4.6240 0.8247 -3.3607 17 6 4.4400 2.7899 -2.1285 18 6 5.1783 3.4827 -1.1537 19 7 5.0061 4.7667 -1.3301 20 7 4.1540 4.9810 -2.4203 21 6 3.6765 6.1209 -2.9944 22 6 2.8491 6.0625 -4.0618 23 6 2.4730 4.8238 -4.5988 24 6 2.9418 3.6755 -4.0277 25 17 2.4877 2.1273 -4.6685 26 6 3.7982 3.7614 -2.9211 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8508 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 3.2325 -1.3298 -0.7420 35 1 3.8299 -1.1767 -2.4117 36 1 4.8852 -4.5553 -1.3945 37 1 5.7877 3.0293 -0.3859 38 1 3.9623 7.0815 -2.5921 39 1 2.4789 6.9751 -4.5051 40 1 1.8152 4.7778 -5.4542 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597136255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:29 Heat of formation + Delta-G solvation = 36.926667 kcal Electronic energy + Delta-G solvation = -27445.077354 eV Core-core repulsion = 23481.956378 eV Total energy + Delta-G solvation = -3963.120977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.25497 -38.84958 -37.56560 -37.29534 -36.37141 -34.63341 -32.88990 -32.42014 -31.02189 -29.50381 -29.04917 -26.86585 -25.84177 -24.06903 -23.84209 -22.79165 -22.41102 -21.52166 -18.88041 -17.60333 -17.04638 -16.58300 -16.31712 -16.24160 -15.89870 -15.84544 -15.37420 -15.12375 -14.91522 -14.50006 -14.11087 -13.76380 -13.44363 -13.03400 -12.78032 -12.66951 -12.46308 -12.16257 -11.95811 -11.79827 -11.56301 -11.50998 -11.16217 -11.04632 -10.82081 -10.75629 -10.68528 -10.31437 -10.04619 -9.96845 -9.62124 -9.45341 -9.34122 -8.87909 -8.28519 -7.71037 -7.42024 -5.89602 -3.93341 0.34650 0.78926 1.73233 2.31523 2.37871 2.95257 3.38048 3.45211 3.48942 3.61189 3.99301 4.14312 4.19316 4.28546 4.44871 4.55840 4.57991 5.01958 5.22440 5.26792 5.33701 5.40434 5.44588 5.48647 5.55092 5.61019 5.64511 5.69942 5.77303 5.84722 5.90564 5.94504 6.27612 6.32737 6.57413 7.31486 7.40856 7.50505 7.69414 7.74935 8.09732 8.41116 8.60992 9.05558 9.25974 9.70417 11.18225 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012510 B = 0.004245 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.648529 B = 6594.483711 C = 7066.355479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.049 3.951 4 C 0.111 3.889 5 N -0.582 5.582 6 C 0.250 3.750 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.894 3.106 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.582 3.418 16 O -0.525 6.525 17 C -0.261 4.261 18 C 0.112 3.888 19 N -0.311 5.311 20 N -0.266 5.266 21 C 0.113 3.887 22 C -0.157 4.157 23 C -0.079 4.079 24 C -0.030 4.030 25 Cl -0.006 7.006 26 C 0.132 3.868 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.260 0.740 37 H 0.204 0.796 38 H 0.174 0.826 39 H 0.163 0.837 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.903 21.076 -1.259 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C -0.030 4.030 4 C -0.013 4.013 5 N -0.313 5.313 6 C 0.131 3.869 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.722 3.278 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.211 1.211 15 C 0.367 3.633 16 O -0.401 6.401 17 C -0.276 4.276 18 C -0.067 4.067 19 N -0.133 5.133 20 N -0.032 5.032 21 C -0.013 4.013 22 C -0.179 4.179 23 C -0.103 4.103 24 C -0.059 4.059 25 Cl 0.024 6.976 26 C 0.012 3.988 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.220 0.780 38 H 0.191 0.809 39 H 0.180 0.820 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.319 21.387 -1.359 22.988 hybrid contribution 0.471 -0.967 0.045 1.077 sum -7.848 20.419 -1.314 21.915 Atomic orbital electron populations 1.22686 0.82273 1.02521 0.98958 1.88118 1.18540 1.26835 1.95096 1.23031 0.95414 0.85347 0.99171 1.21565 0.91314 0.98918 0.89552 1.48016 1.62797 1.09279 1.11158 1.19335 0.97056 0.71534 0.98942 1.21528 0.99095 0.92022 1.43584 0.92586 1.24899 0.96873 0.96768 0.95491 1.69961 1.33235 1.02602 1.47438 0.86515 0.84370 0.78785 0.78140 1.19872 1.21117 1.21065 1.16819 0.78368 0.83545 0.84584 1.90797 1.49193 1.74155 1.25983 1.20310 1.10126 0.95342 1.01832 1.24114 0.96127 0.89524 0.96940 1.77572 1.13865 1.18193 1.03629 1.45989 1.31262 1.04567 1.21393 1.21591 0.95800 0.89420 0.94479 1.20762 1.00933 0.99010 0.97232 1.21196 0.99047 0.90121 0.99922 1.20132 0.99780 0.90378 0.95576 1.98482 1.90260 1.24474 1.84432 1.18825 0.98232 0.86312 0.95418 0.94848 0.94721 0.89762 0.93464 0.94032 0.89178 0.90156 0.93288 0.94167 0.93005 0.77969 0.80886 0.81960 0.83115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.72 9.10 -35.23 -0.32 -7.04 16 3 C 0.05 0.77 6.28 37.16 0.23 1.00 16 4 C 0.11 1.93 5.79 -4.04 -0.02 1.91 16 5 N -0.58 -12.82 2.44 -176.64 -0.43 -13.25 16 6 C 0.25 6.76 5.02 -5.20 -0.03 6.73 16 7 C -0.52 -15.09 9.39 -34.44 -0.32 -15.42 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 11 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 15 C 0.58 12.79 6.61 -12.90 -0.09 12.70 16 16 O -0.52 -13.55 14.78 5.17 0.08 -13.48 16 17 C -0.26 -4.65 5.05 -104.68 -0.53 -5.18 16 18 C 0.11 1.68 9.82 -17.15 -0.17 1.51 16 19 N -0.31 -4.44 12.57 30.75 0.39 -4.05 16 20 N -0.27 -3.54 3.86 -10.52 -0.04 -3.58 16 21 C 0.11 0.99 11.17 -16.67 -0.19 0.80 16 22 C -0.16 -1.10 9.98 -39.95 -0.40 -1.50 16 23 C -0.08 -0.75 9.87 -39.48 -0.39 -1.14 16 24 C -0.03 -0.42 6.33 -39.46 -0.25 -0.67 16 25 Cl -0.01 -0.10 26.14 -51.86 -1.36 -1.45 16 26 C 0.13 2.08 6.74 -84.04 -0.57 1.51 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.61 8.11 -51.93 -0.42 1.19 16 33 H 0.08 1.17 4.69 -51.93 -0.24 0.93 16 34 H 0.05 1.38 6.70 -51.93 -0.35 1.03 16 35 H 0.04 1.24 7.35 -51.93 -0.38 0.85 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.20 2.55 7.80 -52.49 -0.41 2.14 16 38 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.16 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.15 1.03 8.06 -52.48 -0.42 0.60 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -37.00 357.22 -7.01 -44.01 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -4.73 Total: -2.85 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -1.70 Total: 5.51 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.65 Total: -47.36 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.24 Total: -20.52 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.36 Total: -1.45 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.00 -7.01 -44.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597136255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.936 kcal (2) G-P(sol) polarization free energy of solvation -36.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds