Wall clock time and date at job start Tue Mar 31 2020 20:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00149 * 2 1 4 4 C 1.53002 * 109.46946 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47219 * 65.00028 * 4 3 2 6 6 C 1.46493 * 120.00136 * 274.70911 * 5 4 3 7 7 C 1.50697 * 109.47373 * 269.99802 * 6 5 4 8 8 H 1.08002 * 119.99618 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00284 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99871 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99918 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47313 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47001 * 120.00542 * 11 9 7 14 14 H 1.48504 * 109.47221 * 240.00283 * 11 9 7 15 15 C 1.34783 * 119.99579 * 94.70804 * 5 4 3 16 16 O 1.21721 * 119.99180 * 185.54568 * 15 5 4 17 17 C 1.46568 * 120.00133 * 5.54460 * 15 5 4 18 18 C 1.40541 * 126.57831 * 54.58864 * 17 15 5 19 19 N 1.30748 * 108.73776 * 180.02562 * 18 17 15 20 20 N 1.40014 * 109.60520 * 359.97438 * 19 18 17 21 21 C 1.36273 * 132.01090 * 179.97438 * 20 19 18 22 22 C 1.35176 * 120.73199 * 180.02562 * 21 20 19 23 23 C 1.40153 * 120.32694 * 359.75320 * 22 21 20 24 24 C 1.36539 * 119.40114 * 0.49807 * 23 22 21 25 25 Cl 1.73605 * 120.38674 * 179.77978 * 24 23 22 26 26 C 1.36557 * 107.90397 * 0.02562 * 20 19 18 27 27 H 1.08999 * 109.46929 * 299.99851 * 1 2 3 28 28 H 1.08997 * 109.47051 * 59.99948 * 1 2 3 29 29 H 1.09002 * 109.46810 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46865 * 60.00263 * 3 2 1 31 31 H 1.08996 * 109.46943 * 299.99927 * 3 2 1 32 32 H 1.09001 * 109.47414 * 305.00184 * 4 3 2 33 33 H 1.08998 * 109.46932 * 185.00073 * 4 3 2 34 34 H 1.09002 * 109.47149 * 30.00184 * 6 5 4 35 35 H 1.08997 * 109.47079 * 149.99687 * 6 5 4 36 36 H 0.97001 * 120.00222 * 179.97438 * 10 9 7 37 37 H 1.08000 * 125.63501 * 0.05112 * 18 17 15 38 38 H 1.08001 * 119.62939 * 0.02949 * 21 20 19 39 39 H 1.07996 * 119.83286 * 179.97438 * 22 21 20 40 40 H 1.08007 * 120.29732 * 180.25749 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0075 -0.8956 -1.3736 7 6 5.3561 -1.4080 -0.9382 8 1 6.1143 -0.7157 -0.6030 9 6 5.6218 -2.7607 -0.9665 10 7 4.6983 -3.6037 -1.3742 11 14 7.2932 -3.3958 -0.4260 12 1 8.1478 -2.2531 -0.0150 13 1 7.1229 -4.3237 0.7209 14 1 7.9375 -4.1159 -1.5537 15 6 4.3543 1.3356 -2.2894 16 8 4.6240 0.8247 -3.3607 17 6 4.4400 2.7899 -2.1285 18 6 5.1783 3.4827 -1.1537 19 7 5.0061 4.7667 -1.3301 20 7 4.1540 4.9810 -2.4203 21 6 3.6765 6.1209 -2.9944 22 6 2.8491 6.0625 -4.0618 23 6 2.4730 4.8238 -4.5988 24 6 2.9418 3.6755 -4.0277 25 17 2.4877 2.1273 -4.6685 26 6 3.7982 3.7614 -2.9211 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8508 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 3.2325 -1.3298 -0.7420 35 1 3.8299 -1.1767 -2.4117 36 1 4.8852 -4.5553 -1.3945 37 1 5.7877 3.0293 -0.3859 38 1 3.9623 7.0815 -2.5921 39 1 2.4789 6.9751 -4.5051 40 1 1.8152 4.7778 -5.4542 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597136255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:28 Heat of formation + Delta-G solvation = 10.859235 kcal Electronic energy + Delta-G solvation = -27446.207723 eV Core-core repulsion = 23481.956378 eV Total energy + Delta-G solvation = -3964.251345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.28104 -40.41084 -38.72416 -38.50522 -37.42788 -36.37786 -34.74662 -33.72961 -31.96718 -31.12564 -30.23217 -28.62276 -27.11019 -25.46774 -24.95415 -24.13695 -23.78481 -22.84617 -20.27615 -18.85984 -18.50778 -17.96500 -17.75662 -17.49829 -17.04118 -16.97128 -16.73506 -16.50888 -16.19943 -15.96455 -15.77590 -15.20575 -14.65683 -14.39638 -14.04049 -13.83995 -13.70908 -13.52369 -13.34256 -13.22414 -13.02599 -12.84063 -12.71625 -12.59206 -12.47432 -12.20901 -12.11728 -11.94981 -11.82783 -11.58625 -11.09225 -10.66944 -10.57221 -10.55672 -10.51796 -9.33470 -8.68736 -8.13082 -6.27886 -0.52995 -0.14040 0.76696 1.18724 1.36073 1.38770 1.41263 1.53303 2.00373 2.19890 2.37468 2.57529 2.95212 3.15428 3.17975 3.27909 3.71184 3.78745 3.97976 4.12693 4.16143 4.29851 4.31836 4.41040 4.44818 4.50805 4.54575 4.59067 4.74890 4.82883 4.92100 4.92360 5.10852 5.20265 5.35013 5.38472 5.66241 5.66774 5.97404 6.17511 6.28202 6.31625 6.81298 6.91217 7.36464 7.60390 8.93783 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012510 B = 0.004245 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.648529 B = 6594.483711 C = 7066.355479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.054 3.946 4 C 0.109 3.891 5 N -0.588 5.588 6 C 0.275 3.725 7 C -0.539 4.539 8 H 0.055 0.945 9 C 0.006 3.994 10 N -0.930 5.930 11 Si 0.967 3.033 12 H -0.264 1.264 13 H -0.271 1.271 14 H -0.284 1.284 15 C 0.585 3.415 16 O -0.580 6.580 17 C -0.314 4.314 18 C 0.119 3.881 19 N -0.316 5.316 20 N -0.263 5.263 21 C 0.111 3.889 22 C -0.135 4.135 23 C -0.040 4.040 24 C -0.081 4.081 25 Cl -0.047 7.047 26 C 0.133 3.867 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.031 0.969 35 H -0.012 1.012 36 H 0.264 0.736 37 H 0.217 0.783 38 H 0.217 0.783 39 H 0.222 0.778 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 25.539 -0.674 27.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.024 4.024 4 C -0.014 4.014 5 N -0.318 5.318 6 C 0.154 3.846 7 C -0.578 4.578 8 H 0.074 0.926 9 C -0.192 4.192 10 N -0.570 5.570 11 Si 0.792 3.208 12 H -0.188 1.188 13 H -0.196 1.196 14 H -0.210 1.210 15 C 0.373 3.627 16 O -0.460 6.460 17 C -0.329 4.329 18 C -0.060 4.060 19 N -0.138 5.138 20 N -0.028 5.028 21 C -0.014 4.014 22 C -0.155 4.155 23 C -0.064 4.064 24 C -0.110 4.110 25 Cl -0.019 7.019 26 C 0.012 3.988 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.129 0.871 34 H 0.049 0.951 35 H 0.006 0.994 36 H 0.073 0.927 37 H 0.233 0.767 38 H 0.234 0.766 39 H 0.239 0.761 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.531 25.909 -0.728 27.287 hybrid contribution 0.365 -2.050 -0.290 2.103 sum -8.166 23.858 -1.018 25.238 Atomic orbital electron populations 1.22850 0.80209 1.03135 1.00573 1.88059 1.21038 1.28486 1.95422 1.23021 0.93989 0.84773 1.00592 1.21818 0.92900 0.99781 0.86922 1.47917 1.63251 1.07405 1.13232 1.18642 0.95929 0.75042 0.95024 1.21813 0.99714 0.92549 1.43688 0.92631 1.25855 1.01090 0.96963 0.95314 1.70101 1.35543 1.03034 1.48296 0.85379 0.79156 0.78385 0.77925 1.18816 1.19583 1.20961 1.17343 0.76605 0.85421 0.83353 1.90738 1.51493 1.75754 1.28028 1.19766 1.14720 0.92908 1.05477 1.24234 0.95592 0.89620 0.96536 1.77513 1.14616 1.17289 1.04357 1.46295 1.30611 1.04965 1.20918 1.22698 0.94878 0.89522 0.94339 1.21514 0.98698 0.99715 0.95607 1.21831 0.96162 0.89454 0.98928 1.20337 1.03089 0.90171 0.97365 1.98463 1.90769 1.27644 1.84975 1.18893 0.97745 0.86895 0.95248 0.91900 0.94254 0.89812 0.89595 0.94636 0.90084 0.87131 0.95137 0.99403 0.92687 0.76671 0.76615 0.76141 0.80034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.41 -15.61 9.10 -148.98 -1.36 -16.97 16 3 C 0.05 1.72 6.28 71.98 0.45 2.17 16 4 C 0.11 3.91 5.79 86.38 0.50 4.41 16 5 N -0.59 -27.70 2.44 -830.98 -2.03 -29.73 16 6 C 0.27 16.06 5.02 85.63 0.43 16.49 16 7 C -0.54 -32.70 9.39 25.60 0.24 -32.46 16 8 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 9 C 0.01 0.37 5.46 84.65 0.46 0.83 16 10 N -0.93 -59.21 13.29 21.45 0.28 -58.93 16 11 Si 0.97 46.89 29.54 68.60 2.03 48.92 16 12 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 15 C 0.58 27.47 6.61 86.41 0.57 28.05 16 16 O -0.58 -32.55 14.78 -4.42 -0.07 -32.62 16 17 C -0.31 -11.48 5.05 -19.90 -0.10 -11.59 16 18 C 0.12 3.53 9.82 85.42 0.84 4.37 16 19 N -0.32 -8.41 12.57 -56.62 -0.71 -9.12 16 20 N -0.26 -6.24 3.86 -187.20 -0.72 -6.97 16 21 C 0.11 1.33 11.17 83.30 0.93 2.26 16 22 C -0.13 -1.01 9.98 22.03 0.22 -0.79 16 23 C -0.04 -0.60 9.87 22.34 0.22 -0.38 16 24 C -0.08 -2.20 6.33 22.35 0.14 -2.06 16 25 Cl -0.05 -1.65 26.14 -2.72 -0.07 -1.72 16 26 C 0.13 4.11 6.74 39.52 0.27 4.37 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 3.01 8.11 -2.39 -0.02 2.99 16 33 H 0.11 3.24 4.69 -2.39 -0.01 3.23 16 34 H 0.03 1.87 6.70 -2.39 -0.02 1.85 16 35 H -0.01 -0.83 7.35 -2.39 -0.02 -0.84 16 36 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 37 H 0.22 5.40 7.80 -2.91 -0.02 5.38 16 38 H 0.22 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.22 -0.75 8.06 -2.91 -0.02 -0.77 16 40 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -90.35 357.22 4.85 -85.50 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.07 Total: 3.92 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 6.42 Total: 17.71 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -3.18 Total: -104.74 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -1.42 Total: -49.59 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.07 Total: -1.72 kcal Total: -90.35 4.85 -85.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597136255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.362 kcal (2) G-P(sol) polarization free energy of solvation -90.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds