Wall clock time and date at job start Tue Mar 31 2020 20:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34766 * 124.17994 * 2 1 4 4 O 1.21243 * 127.15639 * 359.97438 * 3 2 1 5 5 C 1.51581 * 105.69005 * 179.97438 * 3 2 1 6 6 N 1.47317 * 103.58722 * 0.31936 * 5 3 2 7 7 C 1.46503 * 126.68513 * 179.84385 * 6 5 3 8 8 C 1.50707 * 109.46690 * 269.98018 * 7 6 5 9 9 O 1.21283 * 120.00096 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99890 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00317 * 180.02562 * 10 8 7 12 12 C 1.50693 * 109.47177 * 89.99424 * 11 10 8 13 13 H 1.08008 * 120.00083 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00099 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99594 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99931 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47207 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46742 * 120.00617 * 16 14 12 19 19 H 1.48502 * 109.46935 * 239.99946 * 16 14 12 20 20 C 1.46507 * 119.99922 * 359.97438 * 10 8 7 21 21 C 1.52999 * 109.46755 * 90.00266 * 20 10 8 22 22 F 1.39904 * 109.47150 * 59.99882 * 21 20 10 23 23 F 1.39906 * 109.46986 * 179.97438 * 21 20 10 24 24 F 1.39899 * 109.47546 * 300.00198 * 21 20 10 25 25 C 1.33791 * 124.17835 * 180.29168 * 2 1 3 26 26 O 1.21540 * 123.76923 * 359.97080 * 25 2 1 27 27 H 1.09002 * 109.47391 * 269.70277 * 1 2 3 28 28 H 1.09001 * 109.46813 * 149.70333 * 1 2 3 29 29 H 1.09004 * 109.47041 * 29.70461 * 1 2 3 30 30 H 1.09003 * 110.76533 * 241.71585 * 5 3 2 31 31 H 1.08994 * 110.43576 * 118.76694 * 5 3 2 32 32 H 1.08990 * 109.47656 * 29.97642 * 7 6 5 33 33 H 1.08996 * 109.47168 * 149.98340 * 7 6 5 34 34 H 1.08993 * 109.47039 * 209.99934 * 11 10 8 35 35 H 1.09001 * 109.46481 * 329.99821 * 11 10 8 36 36 H 0.97006 * 119.99368 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.47288 * 209.99982 * 20 10 8 38 38 H 1.08993 * 109.46866 * 330.00759 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8341 2.2636 -0.0004 5 6 3.6597 0.6342 0.0007 6 7 3.5338 -0.8336 -0.0070 7 6 4.6295 -1.8060 -0.0128 8 6 5.0040 -2.1323 -1.4356 9 8 4.4141 -1.6041 -2.3543 10 7 5.9946 -3.0109 -1.6872 11 6 6.3591 -3.3277 -3.0703 12 6 7.4275 -2.3741 -3.5392 13 1 7.7984 -1.6088 -2.8734 14 6 7.9317 -2.4785 -4.8182 15 7 7.4798 -3.4101 -5.6291 16 14 9.2557 -1.2959 -5.3997 17 1 9.5887 -0.3488 -4.3055 18 1 10.4709 -2.0609 -5.7787 19 1 8.7604 -0.5385 -6.5771 20 6 6.7076 -3.6485 -0.5774 21 6 5.9979 -4.9490 -0.1954 22 9 5.9815 -5.8120 -1.2964 23 9 6.6791 -5.5581 0.8640 24 9 4.6846 -4.6664 0.1951 25 6 2.2166 -1.1068 -0.0056 26 8 1.7603 -2.2333 -0.0109 27 1 -0.3634 -0.0053 1.0276 28 1 -0.3633 -0.8873 -0.5184 29 1 -0.3633 0.8927 -0.5093 30 1 4.1790 0.9699 0.8983 31 1 4.1768 0.9794 -0.8945 32 1 5.4924 -1.3842 0.5024 33 1 4.3110 -2.7154 0.4967 34 1 6.7356 -4.3492 -3.1219 35 1 5.4807 -3.2315 -3.7085 36 1 7.8343 -3.4833 -6.5291 37 1 7.7308 -3.8688 -0.8817 38 1 6.7203 -2.9760 0.2803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599611287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:07 Heat of formation + Delta-G solvation = -209.907649 kcal Electronic energy + Delta-G solvation = -30726.599970 eV Core-core repulsion = 25770.209550 eV Total energy + Delta-G solvation = -4956.390421 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.91389 -47.48832 -47.33326 -42.35445 -39.43593 -38.57046 -36.19947 -35.58053 -35.09369 -32.90106 -30.58107 -29.40265 -27.65102 -27.24425 -26.07095 -23.38995 -23.21292 -22.35721 -20.55251 -19.24145 -18.35627 -18.33282 -17.85795 -17.60051 -17.19466 -16.76040 -16.58175 -16.11958 -15.74372 -15.58636 -14.84916 -14.61082 -14.37413 -14.26602 -14.22248 -14.21373 -14.01912 -13.85337 -13.80161 -13.53821 -13.48608 -13.05362 -12.81731 -12.75350 -12.62323 -12.38088 -12.10122 -11.77339 -11.37215 -11.04073 -10.96259 -10.75020 -10.33186 -10.32404 -9.92082 -9.88802 -9.80326 -8.81924 -8.56699 -8.16668 -6.17569 -4.24172 1.52818 1.91383 2.68208 2.77713 2.94351 3.12117 3.21708 3.29982 3.31538 3.42169 3.92914 4.01647 4.12754 4.31937 4.33410 4.53630 4.72202 4.84229 4.97124 5.07422 5.13656 5.14938 5.17769 5.19047 5.38723 5.43145 5.46718 5.70067 6.18941 6.71631 7.00310 7.14155 7.22137 7.28011 7.75876 7.90352 8.01932 8.04049 8.56154 8.79991 9.41550 10.90828 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.009986 B = 0.004543 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.340988 B = 6161.452178 C = 8157.009617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.579 5.579 3 C 0.528 3.472 4 O -0.476 6.476 5 C 0.063 3.937 6 N -0.606 5.606 7 C 0.117 3.883 8 C 0.493 3.507 9 O -0.508 6.508 10 N -0.593 5.593 11 C 0.243 3.757 12 C -0.535 4.535 13 H 0.060 0.940 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.900 3.100 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.071 3.929 21 C 0.426 3.574 22 F -0.172 7.172 23 F -0.187 7.187 24 F -0.183 7.183 25 C 0.705 3.295 26 O -0.535 6.535 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.265 0.735 37 H 0.134 0.866 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 3.320 16.248 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.325 5.325 3 C 0.315 3.685 4 O -0.347 6.347 5 C -0.062 4.062 6 N -0.343 5.343 7 C -0.008 4.008 8 C 0.278 3.722 9 O -0.382 6.382 10 N -0.326 5.326 11 C 0.125 3.875 12 C -0.573 4.573 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.728 3.272 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.057 4.057 21 C 0.370 3.630 22 F -0.154 7.154 23 F -0.168 7.168 24 F -0.164 7.164 25 C 0.407 3.593 26 O -0.408 6.408 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.152 0.848 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.545 3.437 15.519 16.834 hybrid contribution 0.724 0.266 -0.437 0.886 sum -4.821 3.703 15.082 16.261 Atomic orbital electron populations 1.21809 0.75102 1.04805 1.03424 1.46222 1.09575 1.08103 1.68608 1.20848 0.88889 0.84656 0.74063 1.90804 1.79247 1.17907 1.46749 1.22555 0.95842 0.80918 1.06929 1.46929 1.04740 1.06080 1.76601 1.21608 0.88958 0.93767 0.96470 1.20850 0.80170 0.80028 0.91189 1.90721 1.51241 1.50151 1.46109 1.48230 1.33996 1.41827 1.08565 1.19539 0.97157 0.96820 0.74033 1.21379 1.20998 1.16277 0.98666 0.92151 1.24941 0.97011 0.95636 0.96344 1.69945 1.42545 1.32785 1.07433 0.86417 0.81180 0.80782 0.78854 1.19758 1.20866 1.20848 1.22678 0.99022 0.90173 0.93808 1.21718 0.77839 0.88784 0.74671 1.93233 1.96282 1.72536 1.53337 1.93167 1.79752 1.85472 1.58449 1.93126 1.38978 1.93148 1.91192 1.15748 0.81732 0.84206 0.77630 1.90995 1.75021 1.20231 1.54526 0.91010 0.89167 0.89469 0.85764 0.85403 0.86700 0.85681 0.93961 0.93303 0.92535 0.84806 0.87097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 10.73 59.85 0.64 1.52 16 2 N -0.58 -7.37 3.00 -128.16 -0.39 -7.76 16 3 C 0.53 6.41 8.31 -10.56 -0.09 6.32 16 4 O -0.48 -6.67 17.75 5.59 0.10 -6.57 16 5 C 0.06 0.65 7.66 -4.31 -0.03 0.62 16 6 N -0.61 -8.05 2.51 -181.40 -0.45 -8.51 16 7 C 0.12 1.51 5.11 -5.19 -0.03 1.48 16 8 C 0.49 9.10 7.41 -10.98 -0.08 9.01 16 9 O -0.51 -11.77 16.01 5.56 0.09 -11.69 16 10 N -0.59 -11.01 2.37 -175.06 -0.42 -11.42 16 11 C 0.24 5.85 4.96 -5.20 -0.03 5.82 16 12 C -0.53 -13.86 9.39 -34.44 -0.32 -14.19 16 13 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.34 13.29 55.43 0.74 -24.61 16 16 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.07 0.93 5.33 -4.04 -0.02 0.91 16 21 C 0.43 5.93 3.29 37.16 0.12 6.06 16 22 F -0.17 -2.94 16.23 2.25 0.04 -2.90 16 23 F -0.19 -2.31 17.32 2.25 0.04 -2.27 16 24 F -0.18 -2.69 14.29 2.25 0.03 -2.66 16 25 C 0.70 10.71 8.31 -88.02 -0.73 9.98 16 26 O -0.54 -9.86 17.15 5.33 0.09 -9.77 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.91 7.86 -51.93 -0.41 0.50 16 29 H 0.09 0.76 8.00 -51.93 -0.42 0.34 16 30 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.12 0.93 7.40 -51.93 -0.38 0.55 16 33 H 0.13 1.59 5.37 -51.93 -0.28 1.31 16 34 H 0.04 1.05 7.26 -51.93 -0.38 0.67 16 35 H 0.05 1.38 7.42 -51.93 -0.39 0.99 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.13 1.67 8.07 -51.93 -0.42 1.25 16 38 H 0.11 0.94 6.44 -51.93 -0.33 0.61 16 LS Contribution 345.11 15.07 5.20 5.20 Total: -1.00 -36.01 345.11 -4.43 -40.44 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -3.82 Total: -2.22 kcal Atomic # 6 Polarization: 29.82 SS G_CDS: -0.66 Total: 29.15 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.52 Total: -52.30 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: 0.28 Total: -28.03 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 0.11 Total: -7.83 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.01 -4.43 -40.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599611287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.471 kcal (2) G-P(sol) polarization free energy of solvation -36.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds