Wall clock time and date at job start Tue Mar 31 2020 20:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34766 * 124.17994 * 2 1 4 4 O 1.21243 * 127.15639 * 359.97438 * 3 2 1 5 5 C 1.51581 * 105.69005 * 179.97438 * 3 2 1 6 6 N 1.47317 * 103.58722 * 0.31936 * 5 3 2 7 7 C 1.46503 * 126.68513 * 179.84385 * 6 5 3 8 8 C 1.50707 * 109.46690 * 269.98018 * 7 6 5 9 9 O 1.21283 * 120.00096 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99890 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00317 * 180.02562 * 10 8 7 12 12 C 1.50693 * 109.47177 * 89.99424 * 11 10 8 13 13 H 1.08008 * 120.00083 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00099 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99594 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99931 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47207 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46742 * 120.00617 * 16 14 12 19 19 H 1.48502 * 109.46935 * 239.99946 * 16 14 12 20 20 C 1.46507 * 119.99922 * 359.97438 * 10 8 7 21 21 C 1.52999 * 109.46755 * 90.00266 * 20 10 8 22 22 F 1.39904 * 109.47150 * 59.99882 * 21 20 10 23 23 F 1.39906 * 109.46986 * 179.97438 * 21 20 10 24 24 F 1.39899 * 109.47546 * 300.00198 * 21 20 10 25 25 C 1.33791 * 124.17835 * 180.29168 * 2 1 3 26 26 O 1.21540 * 123.76923 * 359.97080 * 25 2 1 27 27 H 1.09002 * 109.47391 * 269.70277 * 1 2 3 28 28 H 1.09001 * 109.46813 * 149.70333 * 1 2 3 29 29 H 1.09004 * 109.47041 * 29.70461 * 1 2 3 30 30 H 1.09003 * 110.76533 * 241.71585 * 5 3 2 31 31 H 1.08994 * 110.43576 * 118.76694 * 5 3 2 32 32 H 1.08990 * 109.47656 * 29.97642 * 7 6 5 33 33 H 1.08996 * 109.47168 * 149.98340 * 7 6 5 34 34 H 1.08993 * 109.47039 * 209.99934 * 11 10 8 35 35 H 1.09001 * 109.46481 * 329.99821 * 11 10 8 36 36 H 0.97006 * 119.99368 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.47288 * 209.99982 * 20 10 8 38 38 H 1.08993 * 109.46866 * 330.00759 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8341 2.2636 -0.0004 5 6 3.6597 0.6342 0.0007 6 7 3.5338 -0.8336 -0.0070 7 6 4.6295 -1.8060 -0.0128 8 6 5.0040 -2.1323 -1.4356 9 8 4.4141 -1.6041 -2.3543 10 7 5.9946 -3.0109 -1.6872 11 6 6.3591 -3.3277 -3.0703 12 6 7.4275 -2.3741 -3.5392 13 1 7.7984 -1.6088 -2.8734 14 6 7.9317 -2.4785 -4.8182 15 7 7.4798 -3.4101 -5.6291 16 14 9.2557 -1.2959 -5.3997 17 1 9.5887 -0.3488 -4.3055 18 1 10.4709 -2.0609 -5.7787 19 1 8.7604 -0.5385 -6.5771 20 6 6.7076 -3.6485 -0.5774 21 6 5.9979 -4.9490 -0.1954 22 9 5.9815 -5.8120 -1.2964 23 9 6.6791 -5.5581 0.8640 24 9 4.6846 -4.6664 0.1951 25 6 2.2166 -1.1068 -0.0056 26 8 1.7603 -2.2333 -0.0109 27 1 -0.3634 -0.0053 1.0276 28 1 -0.3633 -0.8873 -0.5184 29 1 -0.3633 0.8927 -0.5093 30 1 4.1790 0.9699 0.8983 31 1 4.1768 0.9794 -0.8945 32 1 5.4924 -1.3842 0.5024 33 1 4.3110 -2.7154 0.4967 34 1 6.7356 -4.3492 -3.1219 35 1 5.4807 -3.2315 -3.7085 36 1 7.8343 -3.4833 -6.5291 37 1 7.7308 -3.8688 -0.8817 38 1 6.7203 -2.9760 0.2803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599611287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:06 Heat of formation + Delta-G solvation = -235.616853 kcal Electronic energy + Delta-G solvation = -30727.714805 eV Core-core repulsion = 25770.209550 eV Total energy + Delta-G solvation = -4957.505255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.05914 -48.60878 -48.52868 -43.37244 -40.84364 -39.68840 -37.37370 -36.98717 -36.19658 -34.84416 -31.73949 -30.76605 -29.06902 -28.14834 -27.40999 -24.90071 -24.54775 -23.48611 -21.66121 -20.53633 -19.52099 -19.49041 -19.14954 -18.69189 -18.51285 -18.06181 -17.78601 -17.55428 -17.06713 -16.71557 -16.34174 -15.93482 -15.69016 -15.46040 -15.38235 -15.29585 -15.02989 -14.97042 -14.92522 -14.75673 -14.68349 -14.35661 -14.28240 -13.70052 -13.64065 -13.55659 -13.46082 -13.20008 -12.95182 -12.80454 -12.59342 -12.19167 -12.08190 -11.70981 -11.40738 -11.21744 -10.92343 -10.63674 -10.01265 -9.79396 -8.21194 -6.35464 0.53345 0.93084 1.41355 1.42111 1.44307 1.54983 1.74630 1.88855 1.91933 2.14418 2.42245 2.90797 3.00950 3.05281 3.10084 3.18803 3.57072 3.64619 3.99421 4.14746 4.21655 4.29100 4.35671 4.40855 4.42646 4.48515 4.68729 4.75652 4.92138 5.19622 5.22388 5.41035 5.74856 5.97605 6.02743 6.26381 6.40552 6.74758 6.91253 7.14850 7.36665 8.87509 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.009986 B = 0.004543 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.340988 B = 6161.452178 C = 8157.009617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.582 5.582 3 C 0.528 3.472 4 O -0.497 6.497 5 C 0.068 3.932 6 N -0.606 5.606 7 C 0.126 3.874 8 C 0.485 3.515 9 O -0.568 6.568 10 N -0.599 5.599 11 C 0.260 3.740 12 C -0.537 4.537 13 H 0.071 0.929 14 C 0.006 3.994 15 N -0.932 5.932 16 Si 0.969 3.031 17 H -0.256 1.256 18 H -0.275 1.275 19 H -0.290 1.290 20 C 0.068 3.932 21 C 0.428 3.572 22 F -0.197 7.197 23 F -0.173 7.173 24 F -0.187 7.187 25 C 0.697 3.303 26 O -0.578 6.578 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.178 0.822 31 H 0.127 0.873 32 H 0.179 0.821 33 H 0.131 0.869 34 H 0.029 0.971 35 H -0.006 1.006 36 H 0.265 0.735 37 H 0.143 0.857 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.917 5.061 18.980 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.327 5.327 3 C 0.318 3.682 4 O -0.369 6.369 5 C -0.056 4.056 6 N -0.342 5.342 7 C 0.002 3.998 8 C 0.272 3.728 9 O -0.446 6.446 10 N -0.330 5.330 11 C 0.139 3.861 12 C -0.575 4.575 13 H 0.089 0.911 14 C -0.193 4.193 15 N -0.572 5.572 16 Si 0.794 3.206 17 H -0.179 1.179 18 H -0.201 1.201 19 H -0.216 1.216 20 C -0.057 4.057 21 C 0.372 3.628 22 F -0.179 7.179 23 F -0.154 7.154 24 F -0.169 7.169 25 C 0.399 3.601 26 O -0.454 6.454 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.195 0.805 31 H 0.145 0.855 32 H 0.196 0.804 33 H 0.148 0.852 34 H 0.047 0.953 35 H 0.012 0.988 36 H 0.074 0.926 37 H 0.160 0.840 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.685 5.192 18.317 19.392 hybrid contribution 0.083 -0.322 -1.261 1.304 sum -3.601 4.870 17.056 18.099 Atomic orbital electron populations 1.22011 0.73961 1.04874 1.04907 1.46358 1.10528 1.07760 1.68062 1.21144 0.89696 0.84102 0.73266 1.90801 1.79779 1.18502 1.47822 1.22834 0.94703 0.78808 1.09298 1.47095 1.04100 1.07574 1.75471 1.21792 0.90912 0.94814 0.92319 1.21972 0.78872 0.78691 0.93225 1.90694 1.53057 1.52349 1.48520 1.48068 1.34806 1.42294 1.07879 1.18898 0.94359 0.95931 0.76911 1.21733 1.20652 1.16267 0.98865 0.91062 1.25889 0.99432 0.97272 0.96717 1.70091 1.44333 1.34897 1.07842 0.85341 0.78326 0.78680 0.78276 1.17917 1.20077 1.21642 1.23118 0.98332 0.90402 0.93862 1.21811 0.77802 0.88799 0.74362 1.93193 1.96392 1.73478 1.54843 1.93195 1.79347 1.85295 1.57576 1.93125 1.39487 1.93135 1.91152 1.16031 0.82631 0.84084 0.77348 1.90959 1.75937 1.21911 1.56569 0.88882 0.90006 0.88478 0.80530 0.85498 0.80391 0.85154 0.95298 0.98775 0.92602 0.83950 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.58 10.73 127.77 1.37 2.95 16 2 N -0.58 -14.24 3.00 -796.64 -2.39 -16.63 16 3 C 0.53 11.85 8.31 87.94 0.73 12.58 16 4 O -0.50 -13.11 17.75 -2.92 -0.05 -13.16 16 5 C 0.07 1.16 7.66 85.76 0.66 1.82 16 6 N -0.61 -14.54 2.51 -846.24 -2.12 -16.66 16 7 C 0.13 2.79 5.11 85.63 0.44 3.23 16 8 C 0.48 17.36 7.41 87.66 0.65 18.01 16 9 O -0.57 -26.87 16.01 -3.04 -0.05 -26.92 16 10 N -0.60 -21.68 2.37 -826.16 -1.96 -23.64 16 11 C 0.26 12.91 4.96 85.63 0.42 13.33 16 12 C -0.54 -27.85 9.39 25.60 0.24 -27.61 16 13 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 14 C 0.01 0.32 5.46 84.66 0.46 0.78 16 15 N -0.93 -54.70 13.29 21.45 0.28 -54.42 16 16 Si 0.97 42.00 29.54 68.60 2.03 44.03 16 17 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 18 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 20 C 0.07 1.59 5.33 86.38 0.46 2.05 16 21 C 0.43 11.16 3.29 71.98 0.24 11.39 16 22 F -0.20 -6.78 16.23 44.97 0.73 -6.05 16 23 F -0.17 -3.79 17.32 44.97 0.78 -3.01 16 24 F -0.19 -5.22 14.29 44.97 0.64 -4.58 16 25 C 0.70 20.56 8.31 179.44 1.49 22.05 16 26 O -0.58 -21.44 17.15 -3.84 -0.07 -21.50 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.69 7.86 -2.39 -0.02 1.67 16 29 H 0.10 1.63 8.00 -2.38 -0.02 1.61 16 30 H 0.18 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.18 1.67 7.40 -2.39 -0.02 1.66 16 33 H 0.13 2.88 5.37 -2.39 -0.01 2.87 16 34 H 0.03 1.50 7.26 -2.39 -0.02 1.48 16 35 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 36 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 37 H 0.14 3.14 8.07 -2.39 -0.02 3.12 16 38 H 0.17 1.88 6.44 -2.39 -0.02 1.86 16 Total: -1.00 -84.46 345.11 6.11 -78.34 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.13 Total: 3.62 kcal Atomic # 6 Polarization: 53.42 SS G_CDS: 7.16 Total: 60.58 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -6.19 Total: -111.35 kcal Atomic # 8 Polarization: -61.42 SS G_CDS: -0.17 Total: -61.58 kcal Atomic # 9 Polarization: -15.79 SS G_CDS: 2.15 Total: -13.64 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -84.46 6.11 -78.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599611287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.274 kcal (2) G-P(sol) polarization free energy of solvation -84.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds