Wall clock time and date at job start Tue Mar 31 2020 19:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00331 * 2 1 4 4 H 1.48494 * 109.47266 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47350 * 300.00687 * 3 2 1 6 6 H 1.48508 * 109.46787 * 60.00279 * 3 2 1 7 7 C 1.37879 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00078 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00064 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.46952 * 185.01187 * 9 7 2 11 11 C 1.46959 * 110.99885 * 295.17517 * 10 9 7 12 12 C 1.53044 * 109.36054 * 183.18903 * 11 10 9 13 13 N 1.46963 * 109.36791 * 301.59769 * 12 11 10 14 14 C 1.40348 * 110.99866 * 183.19081 * 13 12 11 15 15 N 1.34071 * 125.86811 * 0.02562 * 14 13 12 16 16 C 1.32487 * 109.24660 * 179.97438 * 15 14 13 17 17 S 1.76269 * 141.83067 * 179.97438 * 16 15 14 18 18 C 1.75779 * 90.69507 * 180.02562 * 17 16 15 19 19 C 1.30937 * 109.80182 * 0.02562 * 18 17 16 20 20 N 1.35071 * 108.95084 * 0.02562 * 16 15 14 21 21 C 1.34911 * 125.85972 * 180.02562 * 14 13 12 22 22 N 1.48737 * 126.50977 * 0.03809 * 21 14 13 23 23 O 1.21807 * 119.99783 * 270.00215 * 22 21 14 24 24 O 1.21796 * 119.99938 * 90.00293 * 22 21 14 25 25 C 1.46957 * 110.87599 * 59.32395 * 13 12 11 26 26 C 1.46955 * 110.99828 * 58.97934 * 10 9 7 27 27 H 0.96998 * 119.99844 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47409 * 65.01009 * 9 7 2 29 29 H 1.08997 * 109.46947 * 305.01097 * 9 7 2 30 30 H 1.09004 * 109.48658 * 63.22623 * 11 10 9 31 31 H 1.08999 * 109.49081 * 303.15998 * 11 10 9 32 32 H 1.09006 * 109.48933 * 181.63589 * 12 11 10 33 33 H 1.08996 * 109.50968 * 61.58451 * 12 11 10 34 34 H 1.08001 * 125.10047 * 179.73644 * 18 17 16 35 35 H 1.07996 * 121.84021 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.49075 * 60.64904 * 25 13 12 37 37 H 1.08999 * 109.48702 * 180.70976 * 25 13 12 38 38 H 1.08999 * 109.48785 * 296.77458 * 26 10 9 39 39 H 1.08995 * 109.49511 * 56.84340 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2010 -3.6132 0.1199 11 6 3.0780 -3.6869 -1.0571 12 6 3.9966 -4.9043 -0.9298 13 7 4.7855 -4.7927 0.3051 14 6 5.6931 -5.8570 0.4200 15 7 5.8465 -6.8571 -0.4596 16 6 6.7916 -7.6784 -0.0266 17 16 7.6405 -9.1627 -0.4548 18 6 8.6022 -9.0615 1.0130 19 6 8.2594 -7.9979 1.6955 20 7 7.2675 -7.2178 1.1505 21 6 6.5612 -6.0493 1.4348 22 7 6.7320 -5.1805 2.6299 23 8 7.5289 -4.2597 2.6044 24 8 6.0751 -5.3899 3.6339 25 6 3.9084 -4.7190 1.4819 26 6 2.9897 -3.5015 1.3548 27 1 -0.4850 0.8400 0.0004 28 1 0.6929 -2.5966 -0.9318 29 1 0.5590 -2.5191 0.8414 30 1 3.6812 -2.7810 -1.1183 31 1 2.4711 -3.7817 -1.9575 32 1 4.6680 -4.9446 -1.7877 33 1 3.3949 -5.8125 -0.8961 34 1 9.3589 -9.7726 1.3100 35 1 8.7299 -7.7475 2.6347 36 1 3.3053 -5.6249 1.5433 37 1 4.5153 -4.6242 2.3824 38 1 3.5918 -2.5936 1.3208 39 1 2.3185 -3.4612 2.2126 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601262556.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:28 Heat of formation + Delta-G solvation = 137.260673 kcal Electronic energy + Delta-G solvation = -27165.153198 eV Core-core repulsion = 23240.719488 eV Total energy + Delta-G solvation = -3924.433710 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.59979 -41.99296 -39.29430 -37.22809 -36.72771 -34.91904 -32.41277 -31.97085 -30.56923 -30.06607 -27.81389 -26.25270 -25.08259 -24.73195 -23.18702 -22.30122 -21.47409 -21.30042 -19.72019 -19.29909 -19.01341 -18.05767 -17.55318 -16.93127 -16.79831 -16.31092 -16.09418 -15.21699 -14.84777 -14.55164 -14.35682 -14.25570 -14.11563 -13.47865 -13.20092 -12.53191 -12.19259 -12.07970 -11.95904 -11.87873 -11.70199 -11.31982 -11.30288 -11.16670 -10.97941 -10.94400 -10.86712 -10.66061 -10.54092 -10.20620 -10.11840 -9.86663 -9.60131 -8.59487 -8.44356 -8.43317 -7.28022 -6.03955 -4.12946 -0.06884 0.04655 0.24310 0.63910 0.94221 1.29050 1.89941 2.02687 3.28458 3.33876 3.36834 3.42009 3.62988 4.13261 4.41904 4.42850 4.55082 4.75506 4.89614 5.09915 5.25585 5.26985 5.35291 5.48762 5.63461 5.66778 5.81964 5.87787 6.05315 6.17043 6.46450 6.52314 6.65965 6.66660 6.87421 7.02736 7.20846 7.37042 7.50078 7.87215 7.95847 8.16763 8.25774 8.96924 9.54589 11.01486 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020168 B = 0.003041 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.975956 B = 9204.805926 C = 9899.200769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.188 3.812 10 N -0.543 5.543 11 C 0.060 3.940 12 C 0.067 3.933 13 N -0.452 5.452 14 C 0.342 3.658 15 N -0.462 5.462 16 C 0.196 3.804 17 S 0.244 5.756 18 C -0.218 4.218 19 C 0.049 3.951 20 N -0.384 5.384 21 C -0.029 4.029 22 N 0.055 4.945 23 O -0.106 6.106 24 O -0.125 6.125 25 C 0.051 3.949 26 C 0.067 3.933 27 H 0.262 0.738 28 H 0.030 0.970 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.208 0.792 35 H 0.185 0.815 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.113 -21.683 1.730 28.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.590 4.590 8 H 0.077 0.923 9 C 0.062 3.938 10 N -0.268 5.268 11 C -0.069 4.069 12 C -0.059 4.059 13 N -0.170 5.170 14 C 0.112 3.888 15 N -0.192 5.192 16 C -0.171 4.171 17 S 0.493 5.507 18 C -0.356 4.356 19 C -0.080 4.080 20 N -0.069 5.069 21 C -0.223 4.223 22 N 0.589 4.411 23 O -0.334 6.334 24 O -0.346 6.346 25 C -0.074 4.074 26 C -0.062 4.062 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.225 0.775 35 H 0.202 0.798 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 17.286 -22.930 -0.577 28.722 hybrid contribution 1.255 2.431 2.195 3.508 sum 18.541 -20.499 1.618 27.687 Atomic orbital electron populations 1.69952 1.06032 1.26801 1.50112 1.24952 0.94755 0.99207 0.94767 0.86585 0.80285 0.83830 0.77661 1.19705 1.20959 1.20879 1.21783 0.93462 0.91991 1.51797 0.92257 1.19755 0.90678 0.85279 0.98053 1.62756 1.16793 1.46761 1.00480 1.22038 0.94277 0.95479 0.95134 1.22346 0.94886 0.99845 0.88824 1.59865 1.18837 1.31056 1.07284 1.18941 0.93869 0.89144 0.86871 1.70968 1.17192 1.02642 1.28395 1.26514 0.99908 1.03019 0.87612 1.85096 1.31227 1.13889 1.20458 1.25207 1.07911 1.02667 0.99820 1.20487 0.92573 0.92664 1.02243 1.43095 1.27843 1.17516 1.18457 1.20544 1.10024 0.94815 0.96896 1.42347 0.99230 0.99873 0.99664 1.94605 1.29582 1.21231 1.87965 1.94571 1.44093 1.76437 1.19458 1.22732 0.93977 1.01153 0.89576 1.21932 0.94867 0.94542 0.94849 0.92829 0.95186 0.94492 0.93030 0.90172 0.89715 0.92348 0.77529 0.79757 0.92461 0.90580 0.92594 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.55 -15.13 7.66 -34.44 -0.26 -15.39 16 8 H 0.06 1.64 5.82 -52.48 -0.31 1.34 16 9 C 0.19 4.79 5.14 -4.97 -0.03 4.76 16 10 N -0.54 -11.69 4.92 -235.91 -1.16 -12.85 16 11 C 0.06 1.17 5.32 -3.77 -0.02 1.15 16 12 C 0.07 1.14 5.00 -3.77 -0.02 1.12 16 13 N -0.45 -7.95 4.82 -173.41 -0.84 -8.79 16 14 C 0.34 5.58 6.43 -153.76 -0.99 4.59 16 15 N -0.46 -6.92 10.41 -12.53 -0.13 -7.05 16 16 C 0.20 2.33 8.92 -88.67 -0.79 1.54 16 17 S 0.24 1.55 23.37 -107.50 -2.51 -0.96 16 18 C -0.22 -0.92 11.11 29.03 0.32 -0.60 16 19 C 0.05 0.36 11.26 -16.73 -0.19 0.17 16 20 N -0.38 -4.56 3.20 -59.97 -0.19 -4.76 16 21 C -0.03 -0.44 7.71 -139.84 -1.08 -1.52 16 22 N 0.06 0.87 3.63 33.78 0.12 0.99 16 23 O -0.11 -1.74 19.26 -29.46 -0.57 -2.31 16 24 O -0.13 -1.97 17.47 -29.46 -0.51 -2.49 16 25 C 0.05 0.90 5.44 -3.77 -0.02 0.88 16 26 C 0.07 1.36 5.24 -3.77 -0.02 1.34 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.03 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.12 6.78 -51.93 -0.35 0.76 16 31 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 32 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.21 0.01 8.06 -52.49 -0.42 -0.42 16 35 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.32 4.93 -51.93 -0.26 1.06 16 38 H 0.06 1.25 6.62 -51.93 -0.34 0.91 16 39 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -32.40 341.33 -12.31 -44.71 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -4.19 Total: -2.69 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -3.19 Total: -0.20 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -1.46 Total: -57.86 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -1.08 Total: -4.80 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.51 Total: -0.96 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.40 -12.31 -44.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262556.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.966 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds