Wall clock time and date at job start Tue Mar 31 2020 19:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00331 * 2 1 4 4 H 1.48494 * 109.47266 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47350 * 300.00687 * 3 2 1 6 6 H 1.48508 * 109.46787 * 60.00279 * 3 2 1 7 7 C 1.37879 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00078 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00064 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.46952 * 185.01187 * 9 7 2 11 11 C 1.46959 * 110.99885 * 295.17517 * 10 9 7 12 12 C 1.53044 * 109.36054 * 183.18903 * 11 10 9 13 13 N 1.46963 * 109.36791 * 301.59769 * 12 11 10 14 14 C 1.40348 * 110.99866 * 183.19081 * 13 12 11 15 15 N 1.34071 * 125.86811 * 0.02562 * 14 13 12 16 16 C 1.32487 * 109.24660 * 179.97438 * 15 14 13 17 17 S 1.76269 * 141.83067 * 179.97438 * 16 15 14 18 18 C 1.75779 * 90.69507 * 180.02562 * 17 16 15 19 19 C 1.30937 * 109.80182 * 0.02562 * 18 17 16 20 20 N 1.35071 * 108.95084 * 0.02562 * 16 15 14 21 21 C 1.34911 * 125.85972 * 180.02562 * 14 13 12 22 22 N 1.48737 * 126.50977 * 0.03809 * 21 14 13 23 23 O 1.21807 * 119.99783 * 270.00215 * 22 21 14 24 24 O 1.21796 * 119.99938 * 90.00293 * 22 21 14 25 25 C 1.46957 * 110.87599 * 59.32395 * 13 12 11 26 26 C 1.46955 * 110.99828 * 58.97934 * 10 9 7 27 27 H 0.96998 * 119.99844 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47409 * 65.01009 * 9 7 2 29 29 H 1.08997 * 109.46947 * 305.01097 * 9 7 2 30 30 H 1.09004 * 109.48658 * 63.22623 * 11 10 9 31 31 H 1.08999 * 109.49081 * 303.15998 * 11 10 9 32 32 H 1.09006 * 109.48933 * 181.63589 * 12 11 10 33 33 H 1.08996 * 109.50968 * 61.58451 * 12 11 10 34 34 H 1.08001 * 125.10047 * 179.73644 * 18 17 16 35 35 H 1.07996 * 121.84021 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.49075 * 60.64904 * 25 13 12 37 37 H 1.08999 * 109.48702 * 180.70976 * 25 13 12 38 38 H 1.08999 * 109.48785 * 296.77458 * 26 10 9 39 39 H 1.08995 * 109.49511 * 56.84340 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2010 -3.6132 0.1199 11 6 3.0780 -3.6869 -1.0571 12 6 3.9966 -4.9043 -0.9298 13 7 4.7855 -4.7927 0.3051 14 6 5.6931 -5.8570 0.4200 15 7 5.8465 -6.8571 -0.4596 16 6 6.7916 -7.6784 -0.0266 17 16 7.6405 -9.1627 -0.4548 18 6 8.6022 -9.0615 1.0130 19 6 8.2594 -7.9979 1.6955 20 7 7.2675 -7.2178 1.1505 21 6 6.5612 -6.0493 1.4348 22 7 6.7320 -5.1805 2.6299 23 8 7.5289 -4.2597 2.6044 24 8 6.0751 -5.3899 3.6339 25 6 3.9084 -4.7190 1.4819 26 6 2.9897 -3.5015 1.3548 27 1 -0.4850 0.8400 0.0004 28 1 0.6929 -2.5966 -0.9318 29 1 0.5590 -2.5191 0.8414 30 1 3.6812 -2.7810 -1.1183 31 1 2.4711 -3.7817 -1.9575 32 1 4.6680 -4.9446 -1.7877 33 1 3.3949 -5.8125 -0.8961 34 1 9.3589 -9.7726 1.3100 35 1 8.7299 -7.7475 2.6347 36 1 3.3053 -5.6249 1.5433 37 1 4.5153 -4.6242 2.3824 38 1 3.5918 -2.5936 1.3208 39 1 2.3185 -3.4612 2.2126 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601262556.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:27 Heat of formation + Delta-G solvation = 117.030539 kcal Electronic energy + Delta-G solvation = -27166.030442 eV Core-core repulsion = 23240.719488 eV Total energy + Delta-G solvation = -3925.310955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.53789 -43.14953 -40.67623 -38.32243 -37.94856 -36.38001 -34.45023 -32.96286 -32.00565 -31.18628 -29.44387 -27.58214 -26.65322 -25.72405 -24.54700 -23.95403 -22.67006 -22.43182 -20.96216 -20.50397 -20.23398 -18.95412 -18.61517 -18.57378 -17.92532 -17.73598 -17.10875 -16.78797 -16.03179 -15.95467 -15.80619 -15.61542 -15.10228 -15.08044 -14.67988 -13.94118 -13.77780 -13.46901 -13.11974 -13.04950 -12.93368 -12.85171 -12.64190 -12.57228 -12.51703 -12.40423 -12.35285 -12.09092 -12.07569 -11.83990 -11.79613 -11.61178 -11.16282 -10.62886 -9.65004 -9.21889 -9.16762 -8.19153 -6.37234 -1.09207 -0.74236 -0.62060 -0.39155 0.37267 0.65577 0.91697 1.09248 1.34356 1.36584 1.48364 2.18284 2.36005 2.74060 3.06904 3.17570 3.32210 3.51794 3.84931 3.88991 3.98758 4.04209 4.14343 4.23840 4.30789 4.40420 4.54297 4.60336 4.66492 4.85487 4.92018 5.02096 5.07112 5.18860 5.29962 5.37545 5.55302 5.71905 5.94755 5.96284 6.13427 6.16010 6.33890 6.81349 7.34144 8.84536 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020168 B = 0.003041 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.975956 B = 9204.805926 C = 9899.200769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.016 3.984 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.558 4.558 8 H 0.053 0.947 9 C 0.202 3.798 10 N -0.540 5.540 11 C 0.063 3.937 12 C 0.084 3.916 13 N -0.469 5.469 14 C 0.325 3.675 15 N -0.493 5.493 16 C 0.176 3.824 17 S 0.307 5.693 18 C -0.171 4.171 19 C 0.004 3.996 20 N -0.381 5.381 21 C -0.046 4.046 22 N 0.059 4.941 23 O -0.132 6.132 24 O -0.124 6.124 25 C 0.067 3.933 26 C 0.072 3.928 27 H 0.266 0.734 28 H 0.012 0.988 29 H 0.013 0.987 30 H 0.028 0.972 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.261 0.739 35 H 0.204 0.796 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.030 0.970 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.892 -24.366 1.557 32.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.597 4.597 8 H 0.071 0.929 9 C 0.075 3.925 10 N -0.264 5.264 11 C -0.065 4.065 12 C -0.042 4.042 13 N -0.189 5.189 14 C 0.094 3.906 15 N -0.223 5.223 16 C -0.190 4.190 17 S 0.556 5.444 18 C -0.308 4.308 19 C -0.122 4.122 20 N -0.065 5.065 21 C -0.242 4.242 22 N 0.591 4.409 23 O -0.354 6.354 24 O -0.347 6.347 25 C -0.059 4.059 26 C -0.057 4.057 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.031 0.969 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.276 0.724 35 H 0.220 0.780 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.143 -25.641 -0.756 32.615 hybrid contribution 0.528 2.958 2.217 3.734 sum 20.671 -22.683 1.461 30.723 Atomic orbital electron populations 1.70052 1.07383 1.27879 1.50927 1.25740 0.95583 1.02617 0.94418 0.85561 0.78776 0.79680 0.78010 1.19717 1.20081 1.20181 1.21963 0.93228 0.93017 1.51474 0.92917 1.19418 0.90935 0.86164 0.95945 1.62678 1.17227 1.44630 1.01847 1.22034 0.94108 0.95923 0.94468 1.22126 0.94493 0.98127 0.89458 1.59770 1.19020 1.33194 1.06867 1.18815 0.94039 0.89673 0.88106 1.70866 1.19357 1.03310 1.28796 1.27492 0.99470 1.04344 0.87681 1.85105 1.29143 1.09665 1.20454 1.25966 1.06262 1.01270 0.97313 1.21050 0.93216 0.93742 1.04207 1.43324 1.28134 1.16496 1.18512 1.20446 1.11251 0.96114 0.96343 1.42453 0.98770 0.99779 0.99904 1.94594 1.30366 1.22089 1.88385 1.94543 1.43805 1.76265 1.20098 1.22464 0.93588 0.99626 0.90186 1.21862 0.94728 0.94951 0.94160 0.92485 0.97008 0.96872 0.95386 0.89625 0.88519 0.92045 0.72354 0.77959 0.91991 0.90344 0.95170 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.30 13.29 21.45 0.28 -55.01 16 2 C 0.02 0.93 5.46 84.66 0.46 1.39 16 3 Si 0.95 45.23 29.54 68.60 2.03 47.26 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.56 -31.63 7.66 25.60 0.20 -31.43 16 8 H 0.05 3.02 5.82 -2.91 -0.02 3.00 16 9 C 0.20 10.76 5.14 85.56 0.44 11.20 16 10 N -0.54 -24.13 4.92 -900.28 -4.43 -28.56 16 11 C 0.06 2.56 5.32 86.31 0.46 3.02 16 12 C 0.08 2.90 5.00 86.31 0.43 3.33 16 13 N -0.47 -16.86 4.82 -702.56 -3.38 -20.25 16 14 C 0.33 10.64 6.43 131.11 0.84 11.48 16 15 N -0.49 -14.42 10.41 -193.55 -2.02 -16.43 16 16 C 0.18 3.83 8.92 179.67 1.60 5.43 16 17 S 0.31 2.61 23.37 -56.49 -1.32 1.29 16 18 C -0.17 -0.52 11.11 67.84 0.75 0.23 16 19 C 0.00 0.05 11.26 83.84 0.94 0.99 16 20 N -0.38 -8.39 3.20 -343.65 -1.10 -9.49 16 21 C -0.05 -1.39 7.71 126.25 0.97 -0.42 16 22 N 0.06 1.88 3.63 -47.03 -0.17 1.71 16 23 O -0.13 -4.43 19.26 18.88 0.36 -4.06 16 24 O -0.12 -3.93 17.47 18.89 0.33 -3.60 16 25 C 0.07 2.43 5.44 86.31 0.47 2.90 16 26 C 0.07 3.03 5.24 86.31 0.45 3.48 16 27 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.01 0.67 8.12 -2.39 -0.02 0.65 16 29 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.03 1.26 6.78 -2.38 -0.02 1.25 16 31 H 0.09 3.31 8.12 -2.39 -0.02 3.29 16 32 H 0.10 3.09 8.03 -2.38 -0.02 3.07 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.26 -1.97 8.06 -2.91 -0.02 -1.99 16 35 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.08 2.79 4.93 -2.39 -0.01 2.78 16 38 H 0.03 1.42 6.62 -2.39 -0.02 1.41 16 39 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -74.02 341.33 -0.28 -74.29 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: 1.11 Total: 1.26 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 8.03 Total: 11.61 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -10.81 Total: -128.04 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.69 Total: -7.66 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.32 Total: 1.29 kcal Total: -74.02 -0.28 -74.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262556.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.322 kcal (2) G-P(sol) polarization free energy of solvation -74.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds