Wall clock time and date at job start Tue Mar 31 2020 19:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 F 1.39893 * 109.47395 * 2 1 4 4 F 1.39902 * 109.47359 * 240.00142 * 2 1 3 5 5 C 1.53004 * 109.47498 * 120.00385 * 2 1 3 6 6 C 1.52992 * 109.47498 * 179.97438 * 5 2 1 7 7 S 1.81403 * 109.47390 * 179.97438 * 6 5 2 8 8 O 1.42101 * 110.53957 * 68.37215 * 7 6 5 9 9 O 1.42101 * 110.54113 * 291.62525 * 7 6 5 10 10 N 1.65596 * 104.45087 * 179.97438 * 7 6 5 11 11 C 1.46494 * 120.00265 * 269.99629 * 10 7 6 12 12 C 1.50697 * 109.47607 * 265.00283 * 11 10 7 13 13 H 1.08003 * 119.99367 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00325 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00248 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99823 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47243 * 89.99955 * 16 14 12 18 18 H 1.48494 * 109.47087 * 210.00326 * 16 14 12 19 19 H 1.48502 * 109.47238 * 329.99945 * 16 14 12 20 20 C 1.46505 * 119.99655 * 90.00050 * 10 7 6 21 21 C 1.50703 * 109.47064 * 95.00018 * 20 10 7 22 22 C 1.34515 * 125.79060 * 89.99944 * 21 20 10 23 23 C 1.41380 * 106.83832 * 179.97438 * 22 21 20 24 24 C 1.34506 * 106.84493 * 359.97438 * 23 22 21 25 25 O 1.34306 * 125.78568 * 269.69282 * 21 20 10 26 26 H 1.09000 * 109.46854 * 299.99800 * 1 2 3 27 27 H 1.09000 * 109.47296 * 60.00065 * 1 2 3 28 28 H 1.09000 * 109.47252 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47245 * 59.99535 * 5 2 1 30 30 H 1.09007 * 109.46968 * 300.00205 * 5 2 1 31 31 H 1.09000 * 109.47252 * 59.99539 * 6 5 2 32 32 H 1.09000 * 109.46854 * 299.99815 * 6 5 2 33 33 H 1.08998 * 109.46996 * 25.00920 * 11 10 7 34 34 H 1.09004 * 109.47165 * 144.99843 * 11 10 7 35 35 H 0.96996 * 120.00154 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47068 * 214.99986 * 20 10 7 37 37 H 1.09001 * 109.47372 * 335.00074 * 20 10 7 38 38 H 1.07996 * 126.58016 * 0.03378 * 22 21 20 39 39 H 1.08006 * 126.57610 * 179.97438 * 23 22 21 40 40 H 1.08005 * 125.79499 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2492 6 6 3.5699 -0.7219 1.2489 7 16 4.1747 -1.5765 2.7303 8 8 3.8780 -2.9644 2.6613 9 8 3.8791 -0.8212 3.8972 10 7 5.8243 -1.5053 2.6040 11 6 6.5530 -2.5729 1.9146 12 6 7.0336 -3.5850 2.9224 13 1 6.8175 -3.4469 3.9715 14 6 7.7492 -4.6872 2.5052 15 7 8.1682 -5.5706 3.3846 16 14 8.1224 -4.9263 0.6905 17 1 9.4140 -4.2722 0.3603 18 1 8.2116 -6.3779 0.3906 19 1 7.0380 -4.3187 -0.1221 20 6 6.5550 -0.3745 3.1818 21 6 7.0363 -0.7401 4.5623 22 6 8.2165 -1.3140 4.8577 23 6 8.2528 -1.4766 6.2616 24 6 7.0930 -0.9920 6.7403 25 8 6.3619 -0.5429 5.7070 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6767 -1.7490 1.2492 30 1 1.6767 -0.2075 2.1393 31 1 3.9337 0.3056 1.2486 32 1 3.9329 -1.2360 0.3589 33 1 5.8918 -3.0597 1.1977 34 1 7.4086 -2.1484 1.3895 35 1 8.6720 -6.3458 3.0910 36 1 7.4105 -0.1341 2.5506 37 1 5.8951 0.4908 3.2444 38 1 8.9885 -1.5955 4.1570 39 1 9.0575 -1.9074 6.8390 40 1 6.8007 -0.9649 7.7797 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601291568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:42 Heat of formation + Delta-G solvation = -175.550538 kcal Electronic energy + Delta-G solvation = -28358.134685 eV Core-core repulsion = 23937.154526 eV Total energy + Delta-G solvation = -4420.980160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.099 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.99247 -47.97922 -43.25324 -38.16066 -37.64788 -36.90843 -35.58740 -34.50866 -33.68697 -31.61987 -31.54749 -29.46879 -26.40228 -25.72595 -23.85350 -22.58610 -22.49124 -21.38659 -19.81625 -19.06977 -18.79310 -18.68507 -18.11252 -17.79819 -17.29434 -17.25299 -16.76138 -16.60984 -16.23185 -15.81613 -15.45494 -15.07835 -14.63264 -14.52193 -14.39260 -14.32019 -14.26804 -13.94863 -13.59615 -13.43135 -13.37594 -13.36536 -13.26979 -13.17167 -13.11010 -12.98707 -12.82449 -12.61981 -12.42771 -12.39261 -12.15595 -11.98787 -11.66361 -11.41549 -10.69745 -10.59055 -9.95445 -9.20798 -8.16474 -6.18954 -0.79911 0.92828 1.39216 1.43300 1.50962 1.68274 2.00241 2.31416 2.41619 2.73411 2.89634 3.08895 3.14274 3.18957 3.28167 3.37620 3.79420 3.85943 3.88936 3.99121 4.28302 4.30240 4.37823 4.40354 4.53942 4.62497 4.67735 4.69994 4.81904 4.89160 5.04352 5.07864 5.16545 5.29265 5.38245 5.56967 5.66068 5.77526 6.40281 6.42968 6.86623 7.41056 9.00784 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.004763 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.264555 B = 5876.678205 C = 7583.484646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.292 3.708 3 F -0.207 7.207 4 F -0.211 7.211 5 C -0.168 4.168 6 C -0.620 4.620 7 S 2.600 3.400 8 O -0.984 6.984 9 O -0.975 6.975 10 N -0.983 5.983 11 C 0.224 3.776 12 C -0.514 4.514 13 H 0.032 0.968 14 C 0.007 3.993 15 N -0.951 5.951 16 Si 0.934 3.066 17 H -0.258 1.258 18 H -0.293 1.293 19 H -0.238 1.238 20 C 0.205 3.795 21 C -0.046 4.046 22 C -0.184 4.184 23 C -0.235 4.235 24 C -0.054 4.054 25 O -0.184 6.184 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.128 0.872 31 H 0.164 0.836 32 H 0.150 0.850 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.262 0.738 36 H 0.136 0.864 37 H 0.117 0.883 38 H 0.137 0.863 39 H 0.153 0.847 40 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.354 15.942 -6.631 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.255 3.745 3 F -0.188 7.188 4 F -0.192 7.192 5 C -0.207 4.207 6 C -0.752 4.752 7 S 2.697 3.303 8 O -0.975 6.975 9 O -0.966 6.966 10 N -0.818 5.818 11 C 0.100 3.900 12 C -0.554 4.554 13 H 0.050 0.950 14 C -0.190 4.190 15 N -0.593 5.593 16 Si 0.757 3.243 17 H -0.182 1.182 18 H -0.219 1.219 19 H -0.161 1.161 20 C 0.080 3.920 21 C -0.097 4.097 22 C -0.204 4.204 23 C -0.254 4.254 24 C -0.122 4.122 25 O -0.080 6.080 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.137 0.863 30 H 0.147 0.853 31 H 0.182 0.818 32 H 0.168 0.832 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.154 0.846 37 H 0.135 0.865 38 H 0.155 0.845 39 H 0.171 0.829 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -11.989 15.532 -5.948 20.502 hybrid contribution 1.173 -0.862 -0.720 1.624 sum -10.816 14.670 -6.668 19.407 Atomic orbital electron populations 1.22874 0.88380 1.07151 1.06916 1.21224 0.95599 0.74948 0.82772 1.92995 1.90913 1.38051 1.96820 1.93003 1.90946 1.81181 1.54059 1.22632 0.92199 1.05650 1.00206 1.30525 1.05431 1.17162 1.22037 1.05190 0.73502 0.74427 0.77205 1.93587 1.83733 1.32371 1.87785 1.93557 1.83882 1.73888 1.45237 1.57335 1.23617 1.31368 1.69512 1.19419 0.93567 0.85054 0.91966 1.21583 1.32977 1.06267 0.94546 0.94961 1.25804 0.95650 0.95268 1.02254 1.70088 1.39622 1.13182 1.36359 0.85928 0.80376 0.77656 0.80342 1.18211 1.21937 1.16064 1.19902 0.99847 0.87533 0.84725 1.23265 0.92294 1.05775 0.88407 1.21631 0.99511 1.03123 0.96172 1.22076 1.00869 1.07210 0.95259 1.24630 0.91595 1.02503 0.93448 1.84059 1.43880 1.64922 1.15163 0.87200 0.89007 0.87656 0.86318 0.85338 0.81823 0.83220 0.94062 0.92093 0.92963 0.84585 0.86544 0.84468 0.82878 0.75095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 9.38 71.98 0.68 -1.30 16 2 C 0.29 5.01 2.11 30.59 0.06 5.08 16 3 F -0.21 -4.05 16.54 44.97 0.74 -3.31 16 4 F -0.21 -4.53 16.54 44.97 0.74 -3.79 16 5 C -0.17 -3.07 4.81 30.59 0.15 -2.92 16 6 C -0.62 -13.60 5.93 71.98 0.43 -13.17 16 7 S 2.60 89.94 5.32 -56.49 -0.30 89.64 16 8 O -0.98 -44.14 16.98 -127.65 -2.17 -46.31 16 9 O -0.98 -36.92 16.99 -127.65 -2.17 -39.09 16 10 N -0.98 -36.01 2.72 -523.91 -1.42 -37.44 16 11 C 0.22 9.61 4.10 85.63 0.35 9.96 16 12 C -0.51 -28.75 8.84 25.60 0.23 -28.53 16 13 H 0.03 2.09 7.07 -2.91 -0.02 2.07 16 14 C 0.01 0.40 5.47 84.66 0.46 0.86 16 15 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 16 Si 0.93 42.03 27.47 68.60 1.88 43.91 16 17 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16 20 C 0.21 6.40 5.81 85.63 0.50 6.89 16 21 C -0.05 -1.80 6.21 24.83 0.15 -1.64 16 22 C -0.18 -7.57 9.43 22.19 0.21 -7.36 16 23 C -0.24 -8.93 10.91 22.19 0.24 -8.69 16 24 C -0.05 -1.90 12.09 66.97 0.81 -1.09 16 25 O -0.18 -7.39 10.65 -2.58 -0.03 -7.42 16 26 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.13 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.16 2.74 7.80 -2.39 -0.02 2.72 16 32 H 0.15 3.10 7.80 -2.39 -0.02 3.08 16 33 H 0.04 1.74 6.66 -2.39 -0.02 1.73 16 34 H 0.06 2.28 7.43 -2.39 -0.02 2.26 16 35 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.14 3.31 8.00 -2.39 -0.02 3.29 16 37 H 0.12 2.82 7.61 -2.39 -0.02 2.80 16 38 H 0.14 5.74 8.06 -2.91 -0.02 5.72 16 39 H 0.15 5.17 8.06 -2.91 -0.02 5.15 16 40 H 0.23 5.79 8.06 -2.91 -0.02 5.77 16 Total: -1.00 -84.59 358.60 2.85 -81.74 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 1.00 Total: 23.68 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 4.27 Total: -41.90 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -1.12 Total: -97.17 kcal Atomic # 8 Polarization: -88.45 SS G_CDS: -4.36 Total: -92.81 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 1.49 Total: -7.09 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.88 Total: 43.91 kcal Atomic # 16 Polarization: 89.94 SS G_CDS: -0.30 Total: 89.64 kcal Total: -84.59 2.85 -81.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601291568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.809 kcal (2) G-P(sol) polarization free energy of solvation -84.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds