Wall clock time and date at job start Tue Mar 31 2020 19:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00119 * 2 1 4 4 H 1.48494 * 109.47061 * 274.06669 * 3 2 1 5 5 H 1.48502 * 109.46941 * 34.06854 * 3 2 1 6 6 H 1.48500 * 109.46693 * 154.06655 * 3 2 1 7 7 C 1.38815 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99847 * 197.52271 * 7 2 1 9 9 N 1.36939 * 119.99945 * 17.52505 * 7 2 1 10 10 C 1.46924 * 120.62849 * 207.99677 * 9 7 2 11 11 C 1.53190 * 108.77731 * 233.63112 * 10 9 7 12 12 C 1.53038 * 109.31314 * 305.36890 * 11 10 9 13 13 N 1.46496 * 109.46068 * 181.38732 * 12 11 10 14 14 C 1.40346 * 120.00305 * 154.97388 * 13 12 11 15 15 N 1.34069 * 125.86255 * 359.96809 * 14 13 12 16 16 C 1.32491 * 109.24459 * 179.97438 * 15 14 13 17 17 S 1.76269 * 141.82858 * 180.02562 * 16 15 14 18 18 C 1.75778 * 90.69461 * 179.97438 * 17 16 15 19 19 C 1.30934 * 109.80079 * 359.97438 * 18 17 16 20 20 N 1.35062 * 108.95043 * 359.97438 * 16 15 14 21 21 C 1.34907 * 125.86338 * 179.97438 * 14 13 12 22 22 N 1.48739 * 126.51348 * 0.04204 * 21 14 13 23 23 O 1.21802 * 120.00016 * 270.00484 * 22 21 14 24 24 O 1.21795 * 120.00479 * 89.99366 * 22 21 14 25 25 C 1.53041 * 109.52993 * 61.37006 * 12 11 10 26 26 C 1.46918 * 120.63083 * 28.02239 * 9 7 2 27 27 H 0.97001 * 119.99678 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.58536 * 113.84265 * 10 9 7 29 29 H 1.09001 * 109.70225 * 353.48992 * 10 9 7 30 30 H 1.09004 * 109.49670 * 185.41218 * 11 10 9 31 31 H 1.09000 * 109.49508 * 65.31977 * 11 10 9 32 32 H 1.09001 * 109.45691 * 301.35422 * 12 11 10 33 33 H 0.97002 * 119.99914 * 334.97086 * 13 12 11 34 34 H 1.08004 * 125.10216 * 180.26878 * 18 17 16 35 35 H 1.07998 * 121.84007 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.49824 * 58.57585 * 25 12 11 37 37 H 1.08994 * 109.49797 * 178.67464 * 25 12 11 38 38 H 1.09002 * 109.59002 * 246.15403 * 26 9 7 39 39 H 1.09007 * 109.59071 * 6.44142 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4118 2.0960 -1.3965 5 1 1.4934 2.6263 0.7843 6 1 3.5882 1.4167 0.6123 7 6 2.0102 -1.2022 -0.0005 8 1 3.0527 -1.2240 0.2811 9 7 1.3732 -2.3604 -0.3582 10 6 1.8144 -3.6543 0.1800 11 6 2.0773 -4.6104 -0.9877 12 6 0.8282 -4.6890 -1.8685 13 7 1.0645 -5.6279 -2.9679 14 6 -0.0185 -6.2729 -3.5850 15 7 -1.3110 -6.1185 -3.2642 16 6 -2.0513 -6.8813 -4.0551 17 16 -3.7256 -7.3269 -4.3796 18 6 -3.2113 -8.4037 -5.6702 19 6 -1.9070 -8.3727 -5.7804 20 7 -1.2412 -7.5459 -4.9072 21 6 0.0624 -7.1547 -4.6027 22 7 1.3056 -7.6209 -5.2731 23 8 1.7383 -7.0196 -6.2400 24 8 1.8911 -8.6037 -4.8552 25 6 0.5166 -3.3035 -2.4392 26 6 0.2358 -2.3328 -1.2878 27 1 -0.4850 0.8401 -0.0004 28 1 1.0366 -4.0673 0.8225 29 1 2.7303 -3.5199 0.7555 30 1 2.3124 -5.6018 -0.6004 31 1 2.9161 -4.2416 -1.5780 32 1 -0.0159 -5.0340 -1.2714 33 1 1.9696 -5.8037 -3.2694 34 1 -3.8724 -8.9980 -6.2837 35 1 -1.3832 -8.9648 -6.5162 36 1 1.3702 -2.9471 -3.0157 37 1 -0.3592 -3.3647 -3.0851 38 1 -0.6708 -2.6380 -0.7652 39 1 0.1091 -1.3238 -1.6805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609333856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:33 Heat of formation + Delta-G solvation = 139.088374 kcal Electronic energy + Delta-G solvation = -26725.669244 eV Core-core repulsion = 22801.314789 eV Total energy + Delta-G solvation = -3924.354455 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.38789 -41.97049 -38.47728 -37.13913 -36.73687 -34.77541 -32.34755 -31.70509 -30.35906 -29.90191 -28.69042 -26.23510 -25.05235 -24.44462 -22.45010 -22.26133 -21.66962 -21.00882 -19.82279 -19.19012 -19.05825 -17.99888 -17.62985 -16.93825 -16.69570 -16.56015 -16.08248 -15.13235 -14.88218 -14.51742 -14.01058 -13.97658 -13.56378 -13.42642 -13.05252 -12.52271 -12.40980 -11.95871 -11.91991 -11.66956 -11.52819 -11.38035 -11.18086 -11.15779 -11.10431 -10.78951 -10.74885 -10.53723 -10.32762 -10.23188 -9.95428 -9.65024 -9.59749 -8.49987 -8.44309 -8.00271 -6.71819 -5.80672 -3.23455 0.01346 0.23097 0.29204 0.74934 1.07970 1.43499 1.99927 2.37553 3.05028 3.37815 3.44906 3.45992 3.75943 4.23547 4.48380 4.55889 4.66882 4.92968 5.19954 5.34342 5.38005 5.42584 5.56592 5.67601 5.75980 6.02280 6.15686 6.20384 6.32049 6.44672 6.52201 6.61485 6.71733 6.74199 6.88775 7.11287 7.32373 7.36260 7.58743 7.64130 7.78578 8.42830 9.18833 9.81883 10.38229 11.27946 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.002970 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.333918 B = 9424.563140 C =10410.568940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.151 3.849 11 C -0.141 4.141 12 C 0.164 3.836 13 N -0.701 5.701 14 C 0.436 3.564 15 N -0.465 5.465 16 C 0.212 3.788 17 S 0.246 5.754 18 C -0.228 4.228 19 C 0.053 3.947 20 N -0.384 5.384 21 C -0.096 4.096 22 N 0.055 4.945 23 O -0.125 6.125 24 O -0.126 6.126 25 C -0.148 4.148 26 C 0.175 3.825 27 H 0.254 0.746 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.407 0.593 34 H 0.206 0.794 35 H 0.182 0.818 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.022 0.978 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.521 -19.367 -12.179 24.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.023 3.977 11 C -0.181 4.181 12 C 0.061 3.939 13 N -0.334 5.334 14 C 0.199 3.801 15 N -0.198 5.198 16 C -0.156 4.156 17 S 0.495 5.505 18 C -0.366 4.366 19 C -0.076 4.076 20 N -0.070 5.070 21 C -0.290 4.290 22 N 0.588 4.412 23 O -0.348 6.348 24 O -0.350 6.350 25 C -0.189 4.189 26 C 0.049 3.951 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.243 0.757 34 H 0.223 0.777 35 H 0.199 0.801 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.757 -18.011 -10.531 23.032 hybrid contribution 2.669 -0.324 -1.736 3.201 sum -7.088 -18.334 -12.267 23.170 Atomic orbital electron populations 1.70042 1.05263 1.25556 1.53598 1.25053 0.95283 0.98473 1.00725 0.86274 0.79183 0.83691 0.77622 1.21461 1.21748 1.20363 1.19196 0.92796 0.84858 1.41631 0.91580 1.44108 1.36452 1.01438 1.49483 1.20820 0.98134 0.86596 0.92106 1.22384 0.96650 1.00027 0.99045 1.21161 0.99047 0.88240 0.85450 1.44879 1.03672 1.46750 1.38101 1.16895 0.88542 0.87782 0.86852 1.70783 0.98445 1.24478 1.26061 1.26433 0.98503 0.97244 0.93383 1.85146 0.91601 1.41859 1.31899 1.25144 0.96959 1.08199 1.06300 1.20419 0.92956 0.97377 0.96855 1.42855 1.04233 1.32957 1.26960 1.20043 0.77303 1.19682 1.11962 1.42419 1.00331 0.99255 0.99179 1.94587 1.69169 1.56033 1.15046 1.94569 1.58697 1.14835 1.66878 1.22638 1.00587 0.95062 1.00573 1.20753 0.88774 0.98134 0.87470 0.93587 0.96074 0.92157 0.92436 0.91728 0.89760 0.75690 0.77733 0.80088 0.92604 0.92856 0.96023 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 11.22 55.49 0.62 -25.46 16 2 C 0.00 0.10 4.90 -17.43 -0.09 0.01 16 3 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.26 -6.96 9.58 -15.06 -0.14 -7.11 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.71 2.99 -172.31 -0.52 -15.22 16 10 C 0.15 3.09 6.51 -3.71 -0.02 3.07 16 11 C -0.14 -2.40 5.55 -26.61 -0.15 -2.55 16 12 C 0.16 2.86 2.60 -67.89 -0.18 2.69 16 13 N -0.70 -11.03 5.30 -54.22 -0.29 -11.32 16 14 C 0.44 6.96 7.69 -153.77 -1.18 5.78 16 15 N -0.46 -7.44 10.80 -12.53 -0.14 -7.57 16 16 C 0.21 2.71 8.92 -88.67 -0.79 1.92 16 17 S 0.25 1.86 23.37 -107.50 -2.51 -0.66 16 18 C -0.23 -1.15 11.11 29.03 0.32 -0.83 16 19 C 0.05 0.42 11.26 -16.73 -0.19 0.23 16 20 N -0.38 -4.71 3.20 -59.97 -0.19 -4.91 16 21 C -0.10 -1.41 8.06 -139.84 -1.13 -2.54 16 22 N 0.06 0.81 4.48 33.78 0.15 0.96 16 23 O -0.12 -1.88 19.26 -29.46 -0.57 -2.45 16 24 O -0.13 -1.86 19.26 -29.46 -0.57 -2.43 16 25 C -0.15 -2.95 5.67 -26.61 -0.15 -3.10 16 26 C 0.18 4.20 5.31 -3.71 -0.02 4.18 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 1.20 7.94 -51.93 -0.41 0.79 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.58 7.84 -51.93 -0.41 1.17 16 33 H 0.41 5.90 8.73 -40.82 -0.36 5.54 16 34 H 0.21 0.18 8.06 -52.48 -0.42 -0.24 16 35 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 LS Contribution 349.69 15.07 5.27 5.27 Total: -1.00 -32.11 349.69 -11.90 -44.01 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.42 Total: 1.37 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -3.71 Total: 1.75 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -0.36 Total: -63.52 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -1.13 Total: -4.88 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.51 Total: -0.66 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.11 -11.90 -44.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609333856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.095 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds