Wall clock time and date at job start Tue Mar 31 2020 19:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00119 * 2 1 4 4 H 1.48494 * 109.47061 * 274.06669 * 3 2 1 5 5 H 1.48502 * 109.46941 * 34.06854 * 3 2 1 6 6 H 1.48500 * 109.46693 * 154.06655 * 3 2 1 7 7 C 1.38815 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99847 * 197.52271 * 7 2 1 9 9 N 1.36939 * 119.99945 * 17.52505 * 7 2 1 10 10 C 1.46924 * 120.62849 * 207.99677 * 9 7 2 11 11 C 1.53190 * 108.77731 * 233.63112 * 10 9 7 12 12 C 1.53038 * 109.31314 * 305.36890 * 11 10 9 13 13 N 1.46496 * 109.46068 * 181.38732 * 12 11 10 14 14 C 1.40346 * 120.00305 * 154.97388 * 13 12 11 15 15 N 1.34069 * 125.86255 * 359.96809 * 14 13 12 16 16 C 1.32491 * 109.24459 * 179.97438 * 15 14 13 17 17 S 1.76269 * 141.82858 * 180.02562 * 16 15 14 18 18 C 1.75778 * 90.69461 * 179.97438 * 17 16 15 19 19 C 1.30934 * 109.80079 * 359.97438 * 18 17 16 20 20 N 1.35062 * 108.95043 * 359.97438 * 16 15 14 21 21 C 1.34907 * 125.86338 * 179.97438 * 14 13 12 22 22 N 1.48739 * 126.51348 * 0.04204 * 21 14 13 23 23 O 1.21802 * 120.00016 * 270.00484 * 22 21 14 24 24 O 1.21795 * 120.00479 * 89.99366 * 22 21 14 25 25 C 1.53041 * 109.52993 * 61.37006 * 12 11 10 26 26 C 1.46918 * 120.63083 * 28.02239 * 9 7 2 27 27 H 0.97001 * 119.99678 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.58536 * 113.84265 * 10 9 7 29 29 H 1.09001 * 109.70225 * 353.48992 * 10 9 7 30 30 H 1.09004 * 109.49670 * 185.41218 * 11 10 9 31 31 H 1.09000 * 109.49508 * 65.31977 * 11 10 9 32 32 H 1.09001 * 109.45691 * 301.35422 * 12 11 10 33 33 H 0.97002 * 119.99914 * 334.97086 * 13 12 11 34 34 H 1.08004 * 125.10216 * 180.26878 * 18 17 16 35 35 H 1.07998 * 121.84007 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.49824 * 58.57585 * 25 12 11 37 37 H 1.08994 * 109.49797 * 178.67464 * 25 12 11 38 38 H 1.09002 * 109.59002 * 246.15403 * 26 9 7 39 39 H 1.09007 * 109.59071 * 6.44142 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4118 2.0960 -1.3965 5 1 1.4934 2.6263 0.7843 6 1 3.5882 1.4167 0.6123 7 6 2.0102 -1.2022 -0.0005 8 1 3.0527 -1.2240 0.2811 9 7 1.3732 -2.3604 -0.3582 10 6 1.8144 -3.6543 0.1800 11 6 2.0773 -4.6104 -0.9877 12 6 0.8282 -4.6890 -1.8685 13 7 1.0645 -5.6279 -2.9679 14 6 -0.0185 -6.2729 -3.5850 15 7 -1.3110 -6.1185 -3.2642 16 6 -2.0513 -6.8813 -4.0551 17 16 -3.7256 -7.3269 -4.3796 18 6 -3.2113 -8.4037 -5.6702 19 6 -1.9070 -8.3727 -5.7804 20 7 -1.2412 -7.5459 -4.9072 21 6 0.0624 -7.1547 -4.6027 22 7 1.3056 -7.6209 -5.2731 23 8 1.7383 -7.0196 -6.2400 24 8 1.8911 -8.6037 -4.8552 25 6 0.5166 -3.3035 -2.4392 26 6 0.2358 -2.3328 -1.2878 27 1 -0.4850 0.8401 -0.0004 28 1 1.0366 -4.0673 0.8225 29 1 2.7303 -3.5199 0.7555 30 1 2.3124 -5.6018 -0.6004 31 1 2.9161 -4.2416 -1.5780 32 1 -0.0159 -5.0340 -1.2714 33 1 1.9696 -5.8037 -3.2694 34 1 -3.8724 -8.9980 -6.2837 35 1 -1.3832 -8.9648 -6.5162 36 1 1.3702 -2.9471 -3.0157 37 1 -0.3592 -3.3647 -3.0851 38 1 -0.6708 -2.6380 -0.7652 39 1 0.1091 -1.3238 -1.6805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609333856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:30 Heat of formation + Delta-G solvation = 121.777093 kcal Electronic energy + Delta-G solvation = -26726.419917 eV Core-core repulsion = 22801.314789 eV Total energy + Delta-G solvation = -3925.105129 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -44.33662 -43.06925 -39.88243 -38.26332 -37.87918 -36.22952 -34.06084 -32.69616 -31.88907 -31.54050 -29.93970 -27.40248 -26.69170 -25.41733 -23.99506 -23.83045 -22.76620 -22.14009 -21.19029 -20.38691 -20.19539 -19.00444 -18.80685 -18.52135 -17.67941 -17.62951 -17.29617 -16.77396 -16.01840 -15.58803 -15.51076 -15.39387 -14.87323 -14.81717 -14.66531 -14.07932 -13.77239 -13.22736 -13.07237 -13.04929 -12.87184 -12.68733 -12.63857 -12.54114 -12.45200 -12.21716 -12.09345 -12.01288 -11.93132 -11.72256 -11.69218 -11.37220 -11.09161 -10.56636 -9.19016 -9.16650 -8.73880 -7.89531 -5.35248 -1.02768 -0.57188 -0.54668 -0.27944 0.45000 0.74649 1.10227 1.29446 1.46274 1.48128 1.57047 1.96096 2.50060 2.84931 3.26197 3.43815 3.61259 3.76047 3.87004 3.99706 4.04251 4.24839 4.29727 4.40956 4.59355 4.61148 4.70628 4.74833 4.88357 4.98236 5.00552 5.07211 5.23481 5.25842 5.41718 5.61597 5.65800 5.67305 5.88128 6.21783 6.36585 6.45846 7.11762 7.81923 8.34341 9.17498 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.002970 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.333918 B = 9424.563140 C =10410.568940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.967 3.033 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.264 4.264 8 H 0.071 0.929 9 N -0.610 5.610 10 C 0.146 3.854 11 C -0.126 4.126 12 C 0.181 3.819 13 N -0.702 5.702 14 C 0.418 3.582 15 N -0.510 5.510 16 C 0.187 3.813 17 S 0.289 5.711 18 C -0.181 4.181 19 C 0.012 3.988 20 N -0.382 5.382 21 C -0.106 4.106 22 N 0.061 4.939 23 O -0.140 6.140 24 O -0.123 6.123 25 C -0.130 4.130 26 C 0.186 3.814 27 H 0.250 0.750 28 H 0.019 0.981 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.412 0.588 34 H 0.258 0.742 35 H 0.204 0.796 36 H 0.050 0.950 37 H 0.050 0.950 38 H -0.002 1.002 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.125 -21.619 -13.611 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.394 4.394 8 H 0.088 0.912 9 N -0.333 5.333 10 C 0.020 3.980 11 C -0.166 4.166 12 C 0.077 3.923 13 N -0.336 5.336 14 C 0.181 3.819 15 N -0.244 5.244 16 C -0.179 4.179 17 S 0.538 5.462 18 C -0.318 4.318 19 C -0.114 4.114 20 N -0.067 5.067 21 C -0.301 4.301 22 N 0.593 4.407 23 O -0.361 6.361 24 O -0.349 6.349 25 C -0.171 4.171 26 C 0.060 3.940 27 H 0.059 0.941 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.249 0.751 34 H 0.274 0.726 35 H 0.221 0.779 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.016 0.984 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.376 -20.317 -12.024 25.788 hybrid contribution 2.630 0.208 -1.346 2.962 sum -7.746 -20.109 -13.370 25.360 Atomic orbital electron populations 1.70196 1.06721 1.25885 1.55182 1.25824 0.96031 1.01607 1.01131 0.85254 0.78332 0.79576 0.77295 1.21508 1.22117 1.19030 1.19546 0.93152 0.85985 1.40741 0.91182 1.44348 1.36381 1.02484 1.50118 1.20980 0.98100 0.85376 0.93513 1.22188 0.96269 1.00569 0.97560 1.20737 0.98830 0.86951 0.85768 1.44495 1.04134 1.46914 1.38104 1.17025 0.88708 0.88553 0.87608 1.70689 0.98823 1.26711 1.28154 1.27268 1.00680 0.96886 0.93050 1.85160 0.88133 1.41062 1.31823 1.25870 0.96325 1.05569 1.04068 1.21001 0.94000 0.98583 0.97853 1.43120 1.03194 1.33094 1.27319 1.20025 0.78164 1.19982 1.11930 1.42418 1.00317 0.99024 0.98955 1.94584 1.69506 1.56374 1.15608 1.94552 1.58710 1.14853 1.66746 1.22364 1.00145 0.95865 0.98705 1.20452 0.88063 0.97164 0.88362 0.94088 0.96324 0.91475 0.89371 0.91438 0.91022 0.75065 0.72623 0.77943 0.93125 0.93144 0.98359 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 11.22 21.65 0.24 -55.83 16 2 C -0.05 -2.85 4.90 84.86 0.42 -2.43 16 3 Si 0.97 45.35 29.59 68.60 2.03 47.38 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.26 -14.62 9.58 84.03 0.81 -13.82 16 8 H 0.07 3.75 7.89 -2.91 -0.02 3.72 16 9 N -0.61 -31.00 2.99 -699.08 -2.09 -33.09 16 10 C 0.15 5.99 6.51 86.36 0.56 6.56 16 11 C -0.13 -4.19 5.55 30.67 0.17 -4.02 16 12 C 0.18 6.39 2.60 45.02 0.12 6.51 16 13 N -0.70 -22.12 5.30 -325.44 -1.72 -23.84 16 14 C 0.42 13.44 7.69 131.12 1.01 14.44 16 15 N -0.51 -16.51 10.80 -193.56 -2.09 -18.60 16 16 C 0.19 4.61 8.92 179.67 1.60 6.21 16 17 S 0.29 3.53 23.37 -56.49 -1.32 2.21 16 18 C -0.18 -0.99 11.11 67.85 0.75 -0.24 16 19 C 0.01 0.16 11.26 83.84 0.94 1.10 16 20 N -0.38 -8.85 3.20 -343.65 -1.10 -9.95 16 21 C -0.11 -3.08 8.06 126.25 1.02 -2.07 16 22 N 0.06 1.74 4.48 -47.03 -0.21 1.53 16 23 O -0.14 -4.19 19.26 18.88 0.36 -3.82 16 24 O -0.12 -3.50 19.26 18.89 0.36 -3.14 16 25 C -0.13 -5.36 5.67 30.67 0.17 -5.19 16 26 C 0.19 9.36 5.31 86.37 0.46 9.82 16 27 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.07 2.63 7.94 -2.39 -0.02 2.61 16 30 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.07 2.74 7.84 -2.39 -0.02 2.72 16 33 H 0.41 11.81 8.73 -92.71 -0.81 11.01 16 34 H 0.26 -1.32 8.06 -2.91 -0.02 -1.34 16 35 H 0.20 1.58 8.06 -2.91 -0.02 1.55 16 36 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.05 3.12 6.06 -2.38 -0.01 3.10 16 Total: -1.00 -73.47 349.69 2.80 -70.67 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.30 Total: 9.60 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 8.03 Total: 16.88 kcal Atomic # 7 Polarization: -132.80 SS G_CDS: -6.97 Total: -139.78 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.73 Total: -6.96 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.32 Total: 2.21 kcal Total: -73.47 2.80 -70.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609333856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.446 kcal (2) G-P(sol) polarization free energy of solvation -73.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds