Wall clock time and date at job start Tue Mar 31 2020 20:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28719 * 125.86838 * 2 1 4 4 N 1.28627 * 110.17950 * 179.97438 * 3 2 1 5 5 C 1.33773 * 108.88378 * 359.76992 * 4 3 2 6 6 C 1.35309 * 125.86514 * 179.97438 * 2 1 3 7 7 S 1.76193 * 126.91832 * 359.97438 * 6 2 1 8 8 O 1.42101 * 106.40024 * 336.46281 * 7 6 2 9 9 O 1.42093 * 106.40730 * 203.54219 * 7 6 2 10 10 N 1.65600 * 107.21736 * 89.99580 * 7 6 2 11 11 C 1.46502 * 120.00318 * 270.00321 * 10 7 6 12 12 C 1.50705 * 109.46982 * 265.00062 * 11 10 7 13 13 H 1.08002 * 120.00138 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99815 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00060 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00139 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46899 * 90.00466 * 16 14 12 18 18 H 1.48498 * 109.47412 * 210.00214 * 16 14 12 19 19 H 1.48504 * 109.47424 * 330.00789 * 16 14 12 20 20 C 1.46504 * 119.99914 * 90.00864 * 10 7 6 21 21 C 1.50707 * 109.46520 * 265.00080 * 20 10 7 22 22 C 1.38227 * 119.62024 * 94.97709 * 21 20 10 23 23 C 1.38627 * 119.15702 * 179.78495 * 22 21 20 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61172 * 274.99461 * 21 20 10 27 27 H 1.09005 * 109.47078 * 270.02097 * 1 2 3 28 28 H 1.09001 * 109.47438 * 30.02114 * 1 2 3 29 29 H 1.08998 * 109.47340 * 150.02411 * 1 2 3 30 30 H 1.08004 * 126.75293 * 180.23402 * 5 4 3 31 31 H 1.08995 * 109.46977 * 24.99765 * 11 10 7 32 32 H 1.09000 * 109.47003 * 145.00274 * 11 10 7 33 33 H 0.97003 * 120.00232 * 180.02562 * 15 14 12 34 34 H 1.08993 * 109.47601 * 144.99657 * 20 10 7 35 35 H 1.08997 * 109.47191 * 24.99190 * 20 10 7 36 36 H 1.07998 * 120.41916 * 359.97438 * 22 21 20 37 37 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 38 38 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 39 39 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4576 0.6953 0.0005 5 6 3.5321 -0.6404 0.0060 6 6 2.2578 -1.0965 0.0005 7 16 1.7363 -2.7795 0.0019 8 8 0.4239 -2.7925 0.5467 9 8 2.8113 -3.5324 0.5465 10 7 1.5905 -3.2488 -1.5795 11 6 0.3142 -3.0808 -2.2789 12 6 -0.4738 -4.3631 -2.2010 13 1 -0.0650 -5.2176 -1.6821 14 6 -1.7171 -4.4451 -2.7913 15 7 -2.2152 -3.4044 -3.4228 16 14 -2.6936 -6.0347 -2.6955 17 1 -3.5464 -6.0192 -1.4799 18 1 -3.5519 -6.1618 -3.9006 19 1 -1.7588 -7.1867 -2.6297 20 6 2.7379 -3.8321 -2.2792 21 6 3.4629 -2.7530 -3.0416 22 6 4.5503 -2.1229 -2.4661 23 6 5.2128 -1.1347 -3.1776 24 6 4.7486 -0.8087 -4.4430 25 6 3.6553 -1.4823 -4.9534 26 7 3.0522 -2.4206 -4.2496 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 4.4321 -1.2374 0.0113 31 1 -0.2534 -2.2766 -1.8108 32 1 0.5022 -2.8328 -3.3235 33 1 -3.0901 -3.4620 -3.8378 34 1 2.3897 -4.5964 -2.9739 35 1 3.4155 -4.2821 -1.5537 36 1 4.8814 -2.3991 -1.4759 37 1 6.0677 -0.6279 -2.7548 38 1 5.2383 -0.0414 -5.0243 39 1 3.2901 -1.2372 -5.9397 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615297831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:33 Heat of formation + Delta-G solvation = 77.522589 kcal Electronic energy + Delta-G solvation = -28327.242874 eV Core-core repulsion = 24400.218726 eV Total energy + Delta-G solvation = -3927.024148 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.29421 -40.06761 -37.11050 -36.05913 -35.58844 -34.62122 -32.84531 -32.34728 -31.46864 -31.17595 -28.00238 -27.66442 -25.65043 -23.53664 -23.24111 -22.69284 -22.37646 -21.66800 -18.92305 -17.93809 -17.40677 -16.87081 -16.64834 -16.49377 -16.05872 -15.93912 -15.65649 -15.38559 -14.73786 -14.41394 -13.99919 -13.56837 -13.32970 -13.21659 -13.11761 -13.04482 -12.55174 -12.44163 -12.38864 -11.97244 -11.77003 -11.72544 -11.42452 -11.31034 -11.20758 -10.92153 -10.86745 -10.63546 -10.25295 -10.15552 -10.00475 -9.84992 -9.68499 -9.27780 -8.94957 -8.52117 -8.33878 -6.14622 -4.18930 0.50000 1.09479 1.19424 1.39133 2.26912 2.36439 3.27856 3.28899 3.34851 3.38712 3.90796 3.98409 4.18373 4.37698 4.41928 4.58712 4.73668 4.80729 4.91674 5.07137 5.10740 5.12879 5.19520 5.20692 5.39463 5.51879 5.59588 5.62537 5.76488 5.91894 5.96641 6.09168 6.21635 6.29309 6.38920 6.77139 7.03670 7.16465 7.43876 7.81776 8.07414 8.18966 8.25734 8.82750 9.46546 10.94025 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.005825 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.123848 B = 4805.445038 C = 5954.694914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.214 5.214 3 N -0.054 5.054 4 N -0.282 5.282 5 C 0.055 3.945 6 C -0.590 4.590 7 S 2.701 3.299 8 O -0.929 6.929 9 O -0.953 6.953 10 N -0.963 5.963 11 C 0.254 3.746 12 C -0.529 4.529 13 H 0.064 0.936 14 C 0.066 3.934 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.165 3.835 21 C 0.113 3.887 22 C -0.175 4.175 23 C -0.072 4.072 24 C -0.178 4.178 25 C 0.099 3.901 26 N -0.455 5.455 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.198 0.802 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.264 0.736 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.379 5.211 1.474 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.010 5.010 3 N -0.036 5.036 4 N -0.144 5.144 5 C -0.107 4.107 6 C -0.800 4.800 7 S 2.781 3.219 8 O -0.918 6.918 9 O -0.943 6.943 10 N -0.803 5.803 11 C 0.133 3.867 12 C -0.569 4.569 13 H 0.082 0.918 14 C -0.137 4.137 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.197 1.197 20 C 0.038 3.962 21 C -0.027 4.027 22 C -0.196 4.196 23 C -0.098 4.098 24 C -0.198 4.198 25 C -0.058 4.058 26 N -0.164 5.164 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.142 0.858 30 H 0.214 0.786 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.336 5.972 1.754 12.065 hybrid contribution 0.233 -0.589 -0.069 0.637 sum 10.569 5.383 1.686 11.980 Atomic orbital electron populations 1.22939 0.70762 1.07953 1.06720 1.47075 1.09720 1.02654 1.41547 1.78125 0.96860 1.12920 1.15719 1.75071 1.09456 1.11980 1.17886 1.23517 0.96138 0.92028 0.98976 1.35435 1.00332 1.19350 1.24910 1.02293 0.73731 0.72055 0.73802 1.93621 1.36276 1.85521 1.76417 1.93546 1.57058 1.66471 1.77179 1.57501 1.19068 1.73228 1.30459 1.19301 0.76034 0.97473 0.93905 1.21404 1.01870 0.98284 1.35303 0.91807 1.24895 0.97247 0.96785 0.94784 1.69915 1.18229 1.29579 1.35472 0.86509 0.80017 0.83429 0.77580 1.20442 1.21176 1.19675 1.20241 0.86778 0.92802 0.96330 1.21977 0.92598 0.96637 0.91484 1.22125 0.97785 0.98247 1.01397 1.21517 0.98721 0.95440 0.94132 1.22127 0.99038 1.01673 0.97000 1.22837 0.91993 0.91581 0.99396 1.67634 1.28353 1.13776 1.06597 0.87515 0.87212 0.85834 0.78552 0.95108 0.92790 0.92608 0.86780 0.88075 0.84829 0.84960 0.85170 0.82942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 10.52 59.85 0.63 1.40 16 2 N -0.21 -3.45 3.74 -67.15 -0.25 -3.70 16 3 N -0.05 -0.91 13.16 60.35 0.79 -0.12 16 4 N -0.28 -4.66 12.41 30.24 0.38 -4.29 16 5 C 0.06 0.84 10.32 -17.73 -0.18 0.65 16 6 C -0.59 -9.70 7.06 -17.05 -0.12 -9.82 16 7 S 2.70 48.79 5.63 -107.50 -0.60 48.19 16 8 O -0.93 -19.07 14.87 -57.17 -0.85 -19.92 16 9 O -0.95 -17.12 16.43 -57.17 -0.94 -18.05 16 10 N -0.96 -18.21 2.75 -116.94 -0.32 -18.54 16 11 C 0.25 5.82 5.10 -5.19 -0.03 5.79 16 12 C -0.53 -13.63 9.38 -34.44 -0.32 -13.95 16 13 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 14 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -24.50 13.29 55.43 0.74 -23.77 16 16 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 20 C 0.17 2.69 5.99 -5.19 -0.03 2.66 16 21 C 0.11 1.75 6.36 -82.58 -0.53 1.22 16 22 C -0.17 -2.25 8.12 -39.44 -0.32 -2.57 16 23 C -0.07 -0.82 10.18 -39.28 -0.40 -1.22 16 24 C -0.18 -2.05 10.11 -39.44 -0.40 -2.45 16 25 C 0.10 1.35 11.18 -17.55 -0.20 1.15 16 26 N -0.45 -7.54 10.25 -9.47 -0.10 -7.63 16 27 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.12 1.95 4.89 -51.93 -0.25 1.70 16 30 H 0.20 2.32 6.46 -52.48 -0.34 1.98 16 31 H 0.03 0.73 5.74 -51.93 -0.30 0.43 16 32 H 0.05 1.33 8.08 -51.93 -0.42 0.91 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.11 1.93 8.11 -51.93 -0.42 1.51 16 35 H 0.10 1.40 6.81 -51.93 -0.35 1.04 16 36 H 0.13 1.44 6.55 -52.49 -0.34 1.09 16 37 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.15 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -32.50 346.39 -7.04 -39.54 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.09 Total: 2.91 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -1.99 Total: -15.48 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 1.24 Total: -58.04 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.79 Total: -37.97 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 48.79 SS G_CDS: -0.60 Total: 48.19 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.50 -7.04 -39.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615297831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.067 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds