Wall clock time and date at job start Tue Mar 31 2020 20:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28719 * 125.86838 * 2 1 4 4 N 1.28627 * 110.17950 * 179.97438 * 3 2 1 5 5 C 1.33773 * 108.88378 * 359.76992 * 4 3 2 6 6 C 1.35309 * 125.86514 * 179.97438 * 2 1 3 7 7 S 1.76193 * 126.91832 * 359.97438 * 6 2 1 8 8 O 1.42101 * 106.40024 * 336.46281 * 7 6 2 9 9 O 1.42093 * 106.40730 * 203.54219 * 7 6 2 10 10 N 1.65600 * 107.21736 * 89.99580 * 7 6 2 11 11 C 1.46502 * 120.00318 * 270.00321 * 10 7 6 12 12 C 1.50705 * 109.46982 * 265.00062 * 11 10 7 13 13 H 1.08002 * 120.00138 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99815 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00060 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00139 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46899 * 90.00466 * 16 14 12 18 18 H 1.48498 * 109.47412 * 210.00214 * 16 14 12 19 19 H 1.48504 * 109.47424 * 330.00789 * 16 14 12 20 20 C 1.46504 * 119.99914 * 90.00864 * 10 7 6 21 21 C 1.50707 * 109.46520 * 265.00080 * 20 10 7 22 22 C 1.38227 * 119.62024 * 94.97709 * 21 20 10 23 23 C 1.38627 * 119.15702 * 179.78495 * 22 21 20 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61172 * 274.99461 * 21 20 10 27 27 H 1.09005 * 109.47078 * 270.02097 * 1 2 3 28 28 H 1.09001 * 109.47438 * 30.02114 * 1 2 3 29 29 H 1.08998 * 109.47340 * 150.02411 * 1 2 3 30 30 H 1.08004 * 126.75293 * 180.23402 * 5 4 3 31 31 H 1.08995 * 109.46977 * 24.99765 * 11 10 7 32 32 H 1.09000 * 109.47003 * 145.00274 * 11 10 7 33 33 H 0.97003 * 120.00232 * 180.02562 * 15 14 12 34 34 H 1.08993 * 109.47601 * 144.99657 * 20 10 7 35 35 H 1.08997 * 109.47191 * 24.99190 * 20 10 7 36 36 H 1.07998 * 120.41916 * 359.97438 * 22 21 20 37 37 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 38 38 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 39 39 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4576 0.6953 0.0005 5 6 3.5321 -0.6404 0.0060 6 6 2.2578 -1.0965 0.0005 7 16 1.7363 -2.7795 0.0019 8 8 0.4239 -2.7925 0.5467 9 8 2.8113 -3.5324 0.5465 10 7 1.5905 -3.2488 -1.5795 11 6 0.3142 -3.0808 -2.2789 12 6 -0.4738 -4.3631 -2.2010 13 1 -0.0650 -5.2176 -1.6821 14 6 -1.7171 -4.4451 -2.7913 15 7 -2.2152 -3.4044 -3.4228 16 14 -2.6936 -6.0347 -2.6955 17 1 -3.5464 -6.0192 -1.4799 18 1 -3.5519 -6.1618 -3.9006 19 1 -1.7588 -7.1867 -2.6297 20 6 2.7379 -3.8321 -2.2792 21 6 3.4629 -2.7530 -3.0416 22 6 4.5503 -2.1229 -2.4661 23 6 5.2128 -1.1347 -3.1776 24 6 4.7486 -0.8087 -4.4430 25 6 3.6553 -1.4823 -4.9534 26 7 3.0522 -2.4206 -4.2496 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 4.4321 -1.2374 0.0113 31 1 -0.2534 -2.2766 -1.8108 32 1 0.5022 -2.8328 -3.3235 33 1 -3.0901 -3.4620 -3.8378 34 1 2.3897 -4.5964 -2.9739 35 1 3.4155 -4.2821 -1.5537 36 1 4.8814 -2.3991 -1.4759 37 1 6.0677 -0.6279 -2.7548 38 1 5.2383 -0.0414 -5.0243 39 1 3.2901 -1.2372 -5.9397 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615297831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:32 Heat of formation + Delta-G solvation = 53.462535 kcal Electronic energy + Delta-G solvation = -28328.286196 eV Core-core repulsion = 24400.218726 eV Total energy + Delta-G solvation = -3928.067470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.54571 -41.09518 -38.58982 -37.54092 -37.08657 -35.84677 -34.69013 -33.36400 -32.73851 -32.41657 -29.41175 -29.05747 -27.12059 -24.69071 -24.52204 -24.26015 -23.61869 -22.83350 -20.29087 -19.33980 -18.78554 -18.51082 -17.79665 -17.72591 -17.55586 -17.20905 -16.96005 -16.47339 -16.33111 -15.81062 -15.35969 -14.80600 -14.53616 -14.40606 -14.26925 -14.22663 -14.02307 -13.83533 -13.81998 -13.43286 -13.22228 -13.07073 -12.95991 -12.73959 -12.69728 -12.47288 -12.41522 -12.22312 -11.96754 -11.78853 -11.48556 -11.07824 -10.73824 -10.55041 -10.43366 -9.97697 -9.85103 -8.16233 -6.26421 -0.92484 -0.16626 0.17025 0.43717 1.07738 1.13256 1.44815 1.46200 1.55269 1.88699 2.43407 2.52594 2.87204 2.94478 3.16343 3.32960 3.40802 3.57614 3.77417 3.84918 3.99976 4.07122 4.08577 4.24005 4.28041 4.40174 4.43506 4.64059 4.69922 4.72600 4.85159 4.95737 5.07189 5.21059 5.28308 5.29226 5.44021 5.63894 5.81172 5.85172 6.11741 6.81063 6.99983 7.17119 7.41900 8.91726 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.005825 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.123848 B = 4805.445038 C = 5954.694914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.214 5.214 3 N -0.061 5.061 4 N -0.292 5.292 5 C 0.068 3.932 6 C -0.603 4.603 7 S 2.718 3.282 8 O -0.959 6.959 9 O -0.951 6.951 10 N -0.968 5.968 11 C 0.273 3.727 12 C -0.542 4.542 13 H 0.061 0.939 14 C 0.017 3.983 15 N -0.923 5.923 16 Si 0.952 3.048 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.265 1.265 20 C 0.160 3.840 21 C 0.091 3.909 22 C -0.175 4.175 23 C -0.071 4.071 24 C -0.169 4.169 25 C 0.079 3.921 26 N -0.498 5.498 27 H 0.128 0.872 28 H 0.134 0.866 29 H 0.100 0.900 30 H 0.230 0.770 31 H 0.021 0.979 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.163 0.837 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.268 5.846 2.041 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.011 5.011 3 N -0.043 5.043 4 N -0.153 5.153 5 C -0.094 4.094 6 C -0.816 4.816 7 S 2.801 3.199 8 O -0.949 6.949 9 O -0.941 6.941 10 N -0.807 5.807 11 C 0.150 3.850 12 C -0.581 4.581 13 H 0.079 0.921 14 C -0.182 4.182 15 N -0.562 5.562 16 Si 0.777 3.223 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.189 1.189 20 C 0.034 3.966 21 C -0.048 4.048 22 C -0.196 4.196 23 C -0.097 4.097 24 C -0.188 4.188 25 C -0.078 4.078 26 N -0.208 5.208 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.118 0.882 30 H 0.246 0.754 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.143 0.857 36 H 0.173 0.827 37 H 0.185 0.815 38 H 0.180 0.820 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.239 6.572 2.320 14.084 hybrid contribution -0.266 -0.710 -0.261 0.801 sum 11.973 5.863 2.059 13.489 Atomic orbital electron populations 1.23144 0.69890 1.08005 1.08172 1.47272 1.10358 1.02437 1.40999 1.78103 0.97214 1.13086 1.15916 1.75068 1.09306 1.12546 1.18420 1.24060 0.96634 0.91719 0.96975 1.35104 1.01165 1.18596 1.26719 1.01512 0.73092 0.72303 0.73010 1.93584 1.38035 1.86285 1.76971 1.93538 1.56652 1.66954 1.76931 1.57340 1.18642 1.74061 1.30626 1.18772 0.77416 0.95924 0.92894 1.21764 1.02320 0.99275 1.34745 0.92102 1.25641 0.98350 0.99572 0.94676 1.70010 1.18608 1.31211 1.36404 0.85648 0.78784 0.80275 0.77585 1.20207 1.20715 1.18930 1.20390 0.86343 0.93152 0.96689 1.21799 0.93952 0.97421 0.91635 1.22345 0.96804 0.98095 1.02317 1.21967 0.99178 0.94685 0.93859 1.22487 0.97789 1.01292 0.97265 1.23181 0.92995 0.91612 1.00005 1.67516 1.30070 1.15516 1.07738 0.85422 0.84742 0.88156 0.75367 0.96097 0.95048 0.92561 0.88540 0.85718 0.82721 0.81544 0.81950 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.28 10.52 127.77 1.34 2.62 16 2 N -0.21 -6.66 3.74 -366.38 -1.37 -8.03 16 3 N -0.06 -1.95 13.16 37.02 0.49 -1.46 16 4 N -0.29 -8.93 12.41 -58.25 -0.72 -9.65 16 5 C 0.07 1.88 10.32 83.73 0.86 2.75 16 6 C -0.60 -19.03 7.06 83.49 0.59 -18.44 16 7 S 2.72 97.00 5.63 -56.49 -0.32 96.68 16 8 O -0.96 -39.79 14.87 -128.00 -1.90 -41.69 16 9 O -0.95 -32.74 16.43 -128.00 -2.10 -34.84 16 10 N -0.97 -37.13 2.75 -523.90 -1.44 -38.57 16 11 C 0.27 12.95 5.10 85.63 0.44 13.39 16 12 C -0.54 -28.62 9.38 25.60 0.24 -28.38 16 13 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 14 C 0.02 0.94 5.46 84.65 0.46 1.40 16 15 N -0.92 -51.84 13.29 21.45 0.28 -51.56 16 16 Si 0.95 42.72 29.54 68.60 2.03 44.74 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 20 C 0.16 5.26 5.99 85.63 0.51 5.77 16 21 C 0.09 2.78 6.36 42.55 0.27 3.05 16 22 C -0.18 -4.08 8.12 22.36 0.18 -3.89 16 23 C -0.07 -1.38 10.18 22.47 0.23 -1.15 16 24 C -0.17 -3.40 10.11 22.36 0.23 -3.18 16 25 C 0.08 2.09 11.18 84.67 0.95 3.04 16 26 N -0.50 -16.73 10.25 -183.88 -1.88 -18.61 16 27 H 0.13 2.86 8.14 -2.38 -0.02 2.84 16 28 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.10 3.27 4.89 -2.39 -0.01 3.26 16 30 H 0.23 4.49 6.46 -2.91 -0.02 4.47 16 31 H 0.02 1.04 5.74 -2.39 -0.01 1.03 16 32 H 0.03 1.62 8.08 -2.39 -0.02 1.61 16 33 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.10 3.43 8.11 -2.39 -0.02 3.41 16 35 H 0.12 3.36 6.81 -2.39 -0.02 3.34 16 36 H 0.16 2.79 6.55 -2.91 -0.02 2.77 16 37 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -70.50 346.39 0.46 -70.04 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.10 Total: 15.98 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 6.30 Total: -23.02 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -4.65 Total: -127.88 kcal Atomic # 8 Polarization: -72.53 SS G_CDS: -4.01 Total: -76.53 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: 97.00 SS G_CDS: -0.32 Total: 96.68 kcal Total: -70.50 0.46 -70.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615297831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.502 kcal (2) G-P(sol) polarization free energy of solvation -70.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds