Wall clock time and date at job start Tue Mar 31 2020 20:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28718 * 125.86995 * 2 1 4 4 N 1.28629 * 110.17987 * 180.24306 * 3 2 1 5 5 C 1.33774 * 108.88846 * 359.76143 * 4 3 2 6 6 C 1.35316 * 125.86925 * 179.83404 * 2 1 3 7 7 S 1.76202 * 126.91052 * 0.03390 * 6 2 1 8 8 O 1.42100 * 106.40303 * 156.16886 * 7 6 2 9 9 O 1.42096 * 106.40377 * 23.24468 * 7 6 2 10 10 N 1.65608 * 107.21643 * 269.70665 * 7 6 2 11 11 C 1.46494 * 119.99583 * 90.00209 * 10 7 6 12 12 C 1.50703 * 109.47225 * 95.00259 * 11 10 7 13 13 H 1.07996 * 120.00066 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99842 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00028 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99805 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46894 * 59.99972 * 16 14 12 18 18 H 1.48504 * 109.47200 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47180 * 300.00441 * 16 14 12 20 20 C 1.46493 * 119.99916 * 269.72891 * 10 7 6 21 21 C 1.50701 * 109.47177 * 94.99966 * 20 10 7 22 22 C 1.38679 * 120.41768 * 269.71588 * 21 20 10 23 23 C 1.38620 * 118.41607 * 179.78590 * 22 21 20 24 24 C 1.38227 * 119.16438 * 0.51449 * 23 22 21 25 25 N 1.31851 * 120.76256 * 359.72632 * 24 23 22 26 26 C 1.31882 * 121.72520 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.46880 * 270.16266 * 1 2 3 28 28 H 1.08996 * 109.47523 * 30.16759 * 1 2 3 29 29 H 1.09001 * 109.47309 * 150.17010 * 1 2 3 30 30 H 1.07996 * 126.75568 * 179.97438 * 5 4 3 31 31 H 1.09005 * 109.47101 * 215.00381 * 11 10 7 32 32 H 1.09001 * 109.47746 * 334.99625 * 11 10 7 33 33 H 0.97002 * 119.99268 * 180.02562 * 15 14 12 34 34 H 1.09004 * 109.46868 * 214.99641 * 20 10 7 35 35 H 1.09004 * 109.47439 * 334.99764 * 20 10 7 36 36 H 1.07997 * 120.78370 * 0.02562 * 22 21 20 37 37 H 1.08004 * 120.41488 * 180.21964 * 23 22 21 38 38 H 1.07996 * 119.61719 * 179.75191 * 24 23 22 39 39 H 1.08007 * 119.61316 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4576 0.6952 -0.0051 5 6 3.5322 -0.6404 -0.0034 6 6 2.2579 -1.0965 0.0032 7 16 1.7362 -2.7796 0.0072 8 8 2.8087 -3.5334 -0.5411 9 8 0.4214 -2.7934 -0.5313 10 7 1.5981 -3.2461 1.5902 11 6 0.3252 -3.0769 2.2952 12 6 -0.4632 -4.3593 2.2234 13 1 -0.0569 -5.2146 1.7042 14 6 -1.7033 -4.4404 2.8207 15 7 -2.1979 -3.3990 3.4534 16 14 -2.6808 -6.0298 2.7311 17 1 -1.9043 -7.1248 3.3661 18 1 -3.9706 -5.8586 3.4470 19 1 -2.9441 -6.3695 1.3097 20 6 2.7471 -3.8335 2.2836 21 6 3.4816 -2.7568 3.0400 22 6 4.5120 -2.0524 2.4356 23 6 5.1563 -1.0677 3.1682 24 6 4.7605 -0.8296 4.4710 25 7 3.7796 -1.5226 5.0151 26 6 3.1411 -2.4632 4.3466 27 1 -0.3633 0.0029 1.0277 28 1 -0.3634 0.8884 -0.5164 29 1 -0.3634 -0.8915 -0.5112 30 1 4.4322 -1.2374 -0.0070 31 1 0.5181 -2.8268 3.3385 32 1 -0.2447 -2.2734 1.8285 33 1 -3.0702 -3.4563 3.8739 34 1 2.3996 -4.5953 2.9816 35 1 3.4182 -4.2877 1.5545 36 1 4.8028 -2.2634 1.4171 37 1 5.9607 -0.4969 2.7281 38 1 5.2601 -0.0669 5.0497 39 1 2.3428 -3.0104 4.8260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619473980.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:36 Heat of formation + Delta-G solvation = 75.127043 kcal Electronic energy + Delta-G solvation = -28325.813184 eV Core-core repulsion = 24398.685158 eV Total energy + Delta-G solvation = -3927.128026 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.31738 -40.07179 -37.18361 -36.27134 -35.66454 -34.63273 -33.10695 -32.23482 -31.35863 -31.22454 -27.98252 -27.67564 -25.57696 -23.67345 -23.26138 -22.72464 -22.39503 -21.66003 -18.99413 -17.95396 -17.49679 -16.88234 -16.79942 -16.56500 -16.16501 -16.07434 -15.69659 -15.10250 -14.78206 -14.49145 -14.06801 -13.52170 -13.44295 -13.29876 -13.21256 -12.91133 -12.59287 -12.51324 -12.46942 -12.15595 -11.79254 -11.76289 -11.38759 -11.34757 -11.23578 -10.97577 -10.94681 -10.72583 -10.28490 -10.22036 -10.09233 -9.89973 -9.59673 -9.34396 -8.92559 -8.61019 -8.43943 -6.23503 -4.29123 0.45356 1.07445 1.21151 1.35900 2.25375 2.34591 3.23721 3.25650 3.29006 3.33070 3.84707 3.95657 4.15738 4.30726 4.49398 4.56154 4.71542 4.86143 4.92320 5.03906 5.06319 5.09269 5.13026 5.16880 5.36608 5.50824 5.62792 5.63955 5.84702 5.88585 5.94669 6.09706 6.15748 6.27876 6.39163 6.80907 6.91348 7.06130 7.25659 7.72869 7.96564 8.09006 8.23877 8.73268 9.37697 10.84782 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.005834 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.597871 B = 4797.970340 C = 5988.144010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.212 5.212 3 N -0.053 5.053 4 N -0.281 5.281 5 C 0.054 3.946 6 C -0.591 4.591 7 S 2.705 3.295 8 O -0.953 6.953 9 O -0.931 6.931 10 N -0.966 5.966 11 C 0.255 3.745 12 C -0.534 4.534 13 H 0.064 0.936 14 C 0.067 3.933 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.160 3.840 21 C -0.155 4.155 22 C -0.077 4.077 23 C -0.171 4.171 24 C 0.094 3.906 25 N -0.486 5.486 26 C 0.123 3.877 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.137 0.863 30 H 0.198 0.802 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.266 0.734 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.151 0.849 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.229 3.784 -2.763 11.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.009 5.009 3 N -0.036 5.036 4 N -0.143 5.143 5 C -0.108 4.108 6 C -0.801 4.801 7 S 2.785 3.215 8 O -0.942 6.942 9 O -0.920 6.920 10 N -0.806 5.806 11 C 0.134 3.866 12 C -0.573 4.573 13 H 0.082 0.918 14 C -0.136 4.136 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.199 1.199 20 C 0.033 3.967 21 C -0.159 4.159 22 C -0.104 4.104 23 C -0.190 4.190 24 C -0.063 4.063 25 N -0.194 5.194 26 C -0.035 4.035 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.155 0.845 30 H 0.214 0.786 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.168 0.832 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.659 5.164 -2.535 11.242 hybrid contribution -0.272 -1.242 -0.496 1.365 sum 9.387 3.922 -3.031 10.615 Atomic orbital electron populations 1.23160 0.70808 1.08598 1.07329 1.47086 1.09726 1.02600 1.41456 1.78134 0.96859 1.12962 1.15607 1.75083 1.09466 1.11912 1.17818 1.23536 0.96113 0.92101 0.99073 1.35361 1.00308 1.19314 1.25123 1.02140 0.73641 0.71983 0.73732 1.93551 1.57140 1.66467 1.77062 1.93557 1.36323 1.85339 1.76823 1.57525 1.19196 1.73262 1.30594 1.19222 0.76479 0.97851 0.93081 1.21368 1.02244 0.98191 1.35541 0.91764 1.24905 0.97180 0.96832 0.94719 1.69896 1.18648 1.29533 1.35004 0.86562 0.79183 0.83254 0.78539 1.20025 1.21164 1.19907 1.20216 0.86478 0.92885 0.97096 1.21508 0.97391 1.00202 0.96750 1.21650 0.94531 0.94381 0.99842 1.22072 1.01757 0.99134 0.96085 1.22738 0.93449 0.97238 0.92917 1.67738 1.07176 1.06175 1.38321 1.22860 0.96566 0.93015 0.91020 0.87332 0.87273 0.84478 0.78563 0.94067 0.94596 0.92406 0.87313 0.88587 0.85050 0.84900 0.83187 0.82100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 11.13 59.85 0.67 1.21 16 2 N -0.21 -3.35 3.74 -67.16 -0.25 -3.60 16 3 N -0.05 -0.89 13.16 60.35 0.79 -0.09 16 4 N -0.28 -4.59 12.41 30.24 0.38 -4.21 16 5 C 0.05 0.80 9.99 -17.73 -0.18 0.62 16 6 C -0.59 -9.43 7.06 -17.04 -0.12 -9.55 16 7 S 2.70 47.01 5.74 -107.50 -0.62 46.39 16 8 O -0.95 -16.70 16.43 -57.17 -0.94 -17.63 16 9 O -0.93 -18.44 14.31 -57.17 -0.82 -19.26 16 10 N -0.97 -17.10 2.75 -116.95 -0.32 -17.42 16 11 C 0.25 5.47 5.10 -5.20 -0.03 5.44 16 12 C -0.53 -13.09 9.38 -34.44 -0.32 -13.41 16 13 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 14 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -23.60 13.29 55.43 0.74 -22.86 16 16 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 C 0.16 2.36 5.83 -5.20 -0.03 2.33 16 21 C -0.15 -2.18 5.48 -104.48 -0.57 -2.75 16 22 C -0.08 -0.97 8.20 -39.28 -0.32 -1.29 16 23 C -0.17 -2.01 10.11 -39.44 -0.40 -2.40 16 24 C 0.09 1.21 11.18 -17.55 -0.20 1.01 16 25 N -0.49 -7.46 10.36 -13.25 -0.14 -7.60 16 26 C 0.12 1.86 10.57 -17.55 -0.19 1.68 16 27 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.14 1.96 5.55 -51.93 -0.29 1.67 16 30 H 0.20 2.27 6.18 -52.49 -0.32 1.94 16 31 H 0.04 0.91 7.68 -51.93 -0.40 0.51 16 32 H 0.04 0.81 7.61 -51.93 -0.40 0.41 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.11 1.56 8.06 -51.93 -0.42 1.14 16 35 H 0.10 1.26 6.86 -51.93 -0.36 0.90 16 36 H 0.13 1.41 5.94 -52.49 -0.31 1.09 16 37 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 39 H 0.16 2.42 7.92 -52.48 -0.42 2.00 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -31.18 346.86 -6.90 -38.09 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.15 Total: 3.54 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -1.78 Total: -15.51 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 1.20 Total: -55.79 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.76 Total: -36.89 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 47.01 SS G_CDS: -0.62 Total: 46.39 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.18 -6.90 -38.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619473980.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.213 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds