Wall clock time and date at job start Tue Mar 31 2020 20:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28718 * 125.86995 * 2 1 4 4 N 1.28629 * 110.17987 * 180.24306 * 3 2 1 5 5 C 1.33774 * 108.88846 * 359.76143 * 4 3 2 6 6 C 1.35316 * 125.86925 * 179.83404 * 2 1 3 7 7 S 1.76202 * 126.91052 * 0.03390 * 6 2 1 8 8 O 1.42100 * 106.40303 * 156.16886 * 7 6 2 9 9 O 1.42096 * 106.40377 * 23.24468 * 7 6 2 10 10 N 1.65608 * 107.21643 * 269.70665 * 7 6 2 11 11 C 1.46494 * 119.99583 * 90.00209 * 10 7 6 12 12 C 1.50703 * 109.47225 * 95.00259 * 11 10 7 13 13 H 1.07996 * 120.00066 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99842 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00028 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99805 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46894 * 59.99972 * 16 14 12 18 18 H 1.48504 * 109.47200 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47180 * 300.00441 * 16 14 12 20 20 C 1.46493 * 119.99916 * 269.72891 * 10 7 6 21 21 C 1.50701 * 109.47177 * 94.99966 * 20 10 7 22 22 C 1.38679 * 120.41768 * 269.71588 * 21 20 10 23 23 C 1.38620 * 118.41607 * 179.78590 * 22 21 20 24 24 C 1.38227 * 119.16438 * 0.51449 * 23 22 21 25 25 N 1.31851 * 120.76256 * 359.72632 * 24 23 22 26 26 C 1.31882 * 121.72520 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.46880 * 270.16266 * 1 2 3 28 28 H 1.08996 * 109.47523 * 30.16759 * 1 2 3 29 29 H 1.09001 * 109.47309 * 150.17010 * 1 2 3 30 30 H 1.07996 * 126.75568 * 179.97438 * 5 4 3 31 31 H 1.09005 * 109.47101 * 215.00381 * 11 10 7 32 32 H 1.09001 * 109.47746 * 334.99625 * 11 10 7 33 33 H 0.97002 * 119.99268 * 180.02562 * 15 14 12 34 34 H 1.09004 * 109.46868 * 214.99641 * 20 10 7 35 35 H 1.09004 * 109.47439 * 334.99764 * 20 10 7 36 36 H 1.07997 * 120.78370 * 0.02562 * 22 21 20 37 37 H 1.08004 * 120.41488 * 180.21964 * 23 22 21 38 38 H 1.07996 * 119.61719 * 179.75191 * 24 23 22 39 39 H 1.08007 * 119.61316 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4576 0.6952 -0.0051 5 6 3.5322 -0.6404 -0.0034 6 6 2.2579 -1.0965 0.0032 7 16 1.7362 -2.7796 0.0072 8 8 2.8087 -3.5334 -0.5411 9 8 0.4214 -2.7934 -0.5313 10 7 1.5981 -3.2461 1.5902 11 6 0.3252 -3.0769 2.2952 12 6 -0.4632 -4.3593 2.2234 13 1 -0.0569 -5.2146 1.7042 14 6 -1.7033 -4.4404 2.8207 15 7 -2.1979 -3.3990 3.4534 16 14 -2.6808 -6.0298 2.7311 17 1 -1.9043 -7.1248 3.3661 18 1 -3.9706 -5.8586 3.4470 19 1 -2.9441 -6.3695 1.3097 20 6 2.7471 -3.8335 2.2836 21 6 3.4816 -2.7568 3.0400 22 6 4.5120 -2.0524 2.4356 23 6 5.1563 -1.0677 3.1682 24 6 4.7605 -0.8296 4.4710 25 7 3.7796 -1.5226 5.0151 26 6 3.1411 -2.4632 4.3466 27 1 -0.3633 0.0029 1.0277 28 1 -0.3634 0.8884 -0.5164 29 1 -0.3634 -0.8915 -0.5112 30 1 4.4322 -1.2374 -0.0070 31 1 0.5181 -2.8268 3.3385 32 1 -0.2447 -2.2734 1.8285 33 1 -3.0702 -3.4563 3.8739 34 1 2.3996 -4.5953 2.9816 35 1 3.4182 -4.2877 1.5545 36 1 4.8028 -2.2634 1.4171 37 1 5.9607 -0.4969 2.7281 38 1 5.2601 -0.0669 5.0497 39 1 2.3428 -3.0104 4.8260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619473980.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:35 Heat of formation + Delta-G solvation = 52.775044 kcal Electronic energy + Delta-G solvation = -28326.782440 eV Core-core repulsion = 24398.685158 eV Total energy + Delta-G solvation = -3928.097282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.54112 -41.12109 -38.60854 -37.67247 -37.10514 -35.82973 -34.79828 -33.47503 -32.60141 -32.36915 -29.34904 -29.05147 -26.95916 -24.86302 -24.53300 -24.19878 -23.61447 -22.82482 -20.31632 -19.31141 -18.77681 -18.47549 -17.99015 -17.80058 -17.51163 -17.37228 -17.01743 -16.41125 -16.15274 -15.77334 -15.44537 -14.75057 -14.60506 -14.44459 -14.31159 -14.18760 -14.06148 -13.94930 -13.66625 -13.54909 -13.19664 -13.13217 -13.01616 -12.69931 -12.61112 -12.49008 -12.42347 -12.22525 -11.97857 -11.79000 -11.47779 -11.12304 -10.69542 -10.54109 -10.45071 -9.99362 -9.91769 -8.16794 -6.27140 -0.92014 -0.16555 0.16725 0.34035 1.09554 1.13894 1.46701 1.48435 1.54747 1.90568 2.43185 2.51938 2.86724 2.92454 3.16695 3.33456 3.55090 3.61079 3.77436 3.81523 3.90577 4.03872 4.08817 4.09118 4.26203 4.41563 4.54359 4.60092 4.71061 4.76552 4.88858 4.92547 5.08216 5.16224 5.20220 5.28000 5.44178 5.63571 5.80438 5.82510 6.10325 6.80806 7.00813 7.04947 7.42166 8.90473 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.005834 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.597871 B = 4797.970340 C = 5988.144010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.212 5.212 3 N -0.063 5.063 4 N -0.292 5.292 5 C 0.065 3.935 6 C -0.602 4.602 7 S 2.720 3.280 8 O -0.953 6.953 9 O -0.960 6.960 10 N -0.969 5.969 11 C 0.270 3.730 12 C -0.542 4.542 13 H 0.063 0.937 14 C 0.021 3.979 15 N -0.921 5.921 16 Si 0.948 3.052 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.155 3.845 21 C -0.159 4.159 22 C -0.080 4.080 23 C -0.162 4.162 24 C 0.085 3.915 25 N -0.513 5.513 26 C 0.103 3.897 27 H 0.107 0.893 28 H 0.141 0.859 29 H 0.127 0.873 30 H 0.230 0.770 31 H 0.030 0.970 32 H 0.024 0.976 33 H 0.266 0.734 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.154 0.846 37 H 0.167 0.833 38 H 0.177 0.823 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.980 4.026 -3.552 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.009 5.009 3 N -0.045 5.045 4 N -0.154 5.154 5 C -0.097 4.097 6 C -0.815 4.815 7 S 2.803 3.197 8 O -0.942 6.942 9 O -0.950 6.950 10 N -0.808 5.808 11 C 0.147 3.853 12 C -0.582 4.582 13 H 0.081 0.919 14 C -0.180 4.180 15 N -0.561 5.561 16 Si 0.774 3.226 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.029 3.971 21 C -0.162 4.162 22 C -0.107 4.107 23 C -0.181 4.181 24 C -0.072 4.072 25 N -0.222 5.222 26 C -0.053 4.053 27 H 0.126 0.874 28 H 0.160 0.840 29 H 0.145 0.855 30 H 0.246 0.754 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.171 0.829 37 H 0.184 0.816 38 H 0.194 0.806 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.420 5.371 -3.323 13.050 hybrid contribution -0.722 -1.250 -0.265 1.467 sum 10.697 4.122 -3.588 12.012 Atomic orbital electron populations 1.23344 0.69898 1.09735 1.07627 1.47286 1.10373 1.02387 1.40886 1.78113 0.97231 1.13234 1.15925 1.75077 1.09346 1.12577 1.18354 1.24079 0.96675 0.91762 0.97223 1.35094 1.01054 1.18660 1.26662 1.01446 0.72996 0.72164 0.73144 1.93544 1.56816 1.66908 1.76919 1.93528 1.38000 1.86044 1.77416 1.57378 1.18866 1.73963 1.30611 1.18776 0.77709 0.96165 0.92625 1.21733 1.02542 0.99229 1.34682 0.91928 1.25593 0.98294 0.99315 0.94750 1.69989 1.18956 1.31057 1.36093 0.85753 0.78067 0.80481 0.78306 1.19081 1.21053 1.20009 1.20402 0.85890 0.93195 0.97564 1.21365 0.98133 1.00484 0.96265 1.21950 0.93796 0.94072 1.00849 1.22437 1.01812 0.98478 0.95417 1.23269 0.92753 0.97226 0.93927 1.67704 1.08397 1.06843 1.39293 1.22759 0.97008 0.93746 0.91823 0.87432 0.84039 0.85519 0.75409 0.95217 0.95783 0.92533 0.87610 0.86533 0.82864 0.81583 0.80628 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.13 127.77 1.42 2.29 16 2 N -0.21 -6.43 3.74 -366.38 -1.37 -7.80 16 3 N -0.06 -1.98 13.16 37.02 0.49 -1.49 16 4 N -0.29 -8.81 12.41 -58.26 -0.72 -9.54 16 5 C 0.06 1.73 9.99 83.73 0.84 2.57 16 6 C -0.60 -18.24 7.06 83.49 0.59 -17.65 16 7 S 2.72 91.90 5.74 -56.49 -0.32 91.58 16 8 O -0.95 -31.46 16.43 -128.00 -2.10 -33.56 16 9 O -0.96 -38.04 14.31 -128.00 -1.83 -39.87 16 10 N -0.97 -34.01 2.75 -523.92 -1.44 -35.46 16 11 C 0.27 11.82 5.10 85.64 0.44 12.25 16 12 C -0.54 -26.88 9.38 25.60 0.24 -26.64 16 13 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 14 C 0.02 1.06 5.46 84.66 0.46 1.52 16 15 N -0.92 -49.57 13.29 21.45 0.28 -49.29 16 16 Si 0.95 40.99 29.54 68.60 2.03 43.02 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 20 C 0.15 4.46 5.83 85.63 0.50 4.96 16 21 C -0.16 -4.31 5.48 -19.77 -0.11 -4.42 16 22 C -0.08 -1.79 8.20 22.47 0.18 -1.61 16 23 C -0.16 -3.27 10.11 22.36 0.23 -3.05 16 24 C 0.09 2.01 11.18 84.69 0.95 2.96 16 25 N -0.51 -15.53 10.36 -195.85 -2.03 -17.56 16 26 C 0.10 3.17 10.57 84.67 0.90 4.06 16 27 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 28 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.13 3.64 5.55 -2.39 -0.01 3.62 16 30 H 0.23 4.30 6.18 -2.91 -0.02 4.29 16 31 H 0.03 1.37 7.68 -2.38 -0.02 1.35 16 32 H 0.02 1.11 7.61 -2.39 -0.02 1.10 16 33 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 34 H 0.11 3.06 8.06 -2.39 -0.02 3.05 16 35 H 0.12 2.84 6.86 -2.39 -0.02 2.82 16 36 H 0.15 2.66 5.94 -2.91 -0.02 2.65 16 37 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.18 3.07 8.06 -2.91 -0.02 3.04 16 39 H 0.15 4.71 7.92 -2.91 -0.02 4.69 16 Total: -1.00 -66.12 346.86 0.70 -65.41 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 1.10 Total: 17.32 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 6.63 Total: -22.75 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -4.79 Total: -121.14 kcal Atomic # 8 Polarization: -69.50 SS G_CDS: -3.93 Total: -73.43 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 16 Polarization: 91.90 SS G_CDS: -0.32 Total: 91.58 kcal Total: -66.12 0.70 -65.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619473980.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.187 kcal (2) G-P(sol) polarization free energy of solvation -66.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds