Wall clock time and date at job start Tue Mar 31 2020 19:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36936 * 119.99896 * 2 1 4 4 H 1.08000 * 120.00089 * 203.03640 * 3 2 1 5 5 C 1.38811 * 120.00188 * 23.03739 * 3 2 1 6 6 N 1.31618 * 119.99854 * 13.13565 * 5 3 2 7 7 Si 1.86798 * 120.00110 * 193.13952 * 5 3 2 8 8 H 1.48498 * 109.47146 * 59.99627 * 7 5 3 9 9 H 1.48494 * 109.47225 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47099 * 299.99880 * 7 5 3 11 11 C 1.46498 * 120.00175 * 180.02562 * 2 1 3 12 12 N 1.46502 * 109.47512 * 89.99465 * 11 2 1 13 13 C 1.33793 * 124.17872 * 90.02491 * 12 11 2 14 14 O 1.21536 * 123.76957 * 359.96242 * 13 12 11 15 15 N 1.34523 * 112.45609 * 179.97438 * 13 12 11 16 16 C 1.47308 * 106.62252 * 0.02562 * 15 13 12 17 17 C 1.52995 * 110.60048 * 241.31676 * 16 15 13 18 18 C 1.50701 * 110.59939 * 118.52635 * 16 15 13 19 19 C 1.38264 * 119.99627 * 211.17858 * 18 16 15 20 20 C 1.38218 * 120.02935 * 179.76805 * 19 18 16 21 21 C 1.38239 * 120.00817 * 0.50763 * 20 19 18 22 22 C 1.38322 * 119.99240 * 359.74477 * 21 20 19 23 23 Cl 1.73598 * 120.01668 * 180.02562 * 22 21 20 24 24 C 1.38192 * 119.99338 * 31.45150 * 18 16 15 25 25 C 1.34772 * 124.17688 * 269.73125 * 12 11 2 26 26 O 1.21230 * 127.15595 * 0.02562 * 25 12 11 27 27 H 1.09002 * 109.47103 * 275.13071 * 1 2 3 28 28 H 1.09000 * 109.47250 * 35.12542 * 1 2 3 29 29 H 1.09001 * 109.47371 * 155.12816 * 1 2 3 30 30 H 0.97002 * 120.00033 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.46971 * 329.99929 * 11 2 1 32 32 H 1.08997 * 109.47236 * 209.99718 * 11 2 1 33 33 H 0.96998 * 126.68448 * 179.97438 * 15 13 12 34 34 H 1.09007 * 109.47000 * 59.29870 * 17 16 15 35 35 H 1.08995 * 109.47291 * 179.29965 * 17 16 15 36 36 H 1.09003 * 109.47361 * 299.30013 * 17 16 15 37 37 H 1.08007 * 119.98352 * 359.97438 * 19 18 16 38 38 H 1.07997 * 119.99412 * 180.25432 * 20 19 18 39 39 H 1.08005 * 119.99908 * 179.72214 * 21 20 19 40 40 H 1.08004 * 120.00594 * 359.95886 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2232 -0.3660 5 6 1.5386 2.3401 0.4704 6 7 0.4137 2.2595 1.1490 7 14 2.3127 4.0078 0.1403 8 1 2.4119 4.2261 -1.3252 9 1 1.4716 5.0722 0.7441 10 1 3.6706 4.0507 0.7401 11 6 2.1975 -1.2687 -0.0006 12 7 2.4416 -1.6911 -1.3820 13 6 3.5256 -1.3548 -2.0904 14 8 4.4250 -0.6598 -1.6600 15 7 3.5086 -1.8716 -3.3322 16 6 2.2581 -2.6411 -3.4513 17 6 2.5578 -4.1169 -3.7216 18 6 1.3863 -2.0708 -4.5403 19 6 0.0099 -2.1514 -4.4372 20 6 -0.7904 -1.6243 -5.4332 21 6 -0.2148 -1.0255 -6.5383 22 6 1.1622 -0.9492 -6.6446 23 17 1.8858 -0.1968 -8.0317 24 6 1.9628 -1.4724 -5.6445 25 6 1.6046 -2.4712 -2.0942 26 8 0.5477 -2.9377 -1.7269 27 1 -0.3633 0.0919 1.0236 28 1 -0.3634 0.8405 -0.5913 29 1 -0.3634 -0.9323 -0.4322 30 1 -0.0131 3.0660 1.4781 31 1 1.6084 -2.0286 0.5129 32 1 3.1499 -1.1386 0.5133 33 1 4.1871 -1.7589 -4.0162 34 1 3.1570 -4.5213 -2.9056 35 1 1.6217 -4.6704 -3.7939 36 1 3.1085 -4.2104 -4.6576 37 1 -0.4402 -2.6234 -3.5763 38 1 -1.8655 -1.6839 -5.3501 39 1 -0.8402 -0.6177 -7.3186 40 1 3.0381 -1.4128 -5.7268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725772607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:29 Heat of formation + Delta-G solvation = 11.046585 kcal Electronic energy + Delta-G solvation = -27793.616936 eV Core-core repulsion = 23829.373714 eV Total energy + Delta-G solvation = -3964.243221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.21057 -39.40339 -38.13152 -36.76735 -36.13918 -35.68209 -33.92792 -31.67360 -31.01121 -30.75105 -29.52797 -26.65960 -25.85055 -24.67817 -23.04056 -22.82582 -21.97592 -20.78385 -19.81174 -18.02308 -17.37117 -16.62602 -16.26162 -16.20233 -15.74817 -15.28645 -15.10518 -14.83882 -14.69403 -14.27422 -14.00081 -13.80679 -13.56937 -13.46068 -13.28646 -12.89350 -12.61721 -12.48185 -12.09126 -11.84006 -11.72106 -11.53852 -11.38695 -11.05279 -10.96845 -10.81492 -10.58823 -10.37344 -10.11325 -10.00067 -9.75700 -9.34743 -9.19383 -9.10358 -8.84737 -8.66992 -7.08226 -5.85855 -3.34107 0.94181 1.04726 1.88874 2.04222 2.70491 3.25509 3.39384 3.41695 3.45389 3.55053 3.59404 4.08460 4.24073 4.45208 4.65006 4.72695 4.88673 5.11995 5.20207 5.31351 5.35108 5.37644 5.45239 5.46490 5.61856 5.63452 5.79218 5.95714 6.05168 6.19219 6.19838 6.28050 6.48889 6.58655 6.71345 7.03184 7.26032 7.60966 7.62470 7.80264 7.83668 8.23825 8.63085 9.09557 9.67564 10.12208 11.18575 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.004492 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.352669 B = 6231.476079 C = 7078.709586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.149 3.851 2 N -0.567 5.567 3 C -0.272 4.272 4 H 0.082 0.918 5 C 0.012 3.988 6 N -0.900 5.900 7 Si 0.909 3.091 8 H -0.283 1.283 9 H -0.289 1.289 10 H -0.279 1.279 11 C 0.343 3.657 12 N -0.573 5.573 13 C 0.702 3.298 14 O -0.535 6.535 15 N -0.732 5.732 16 C 0.158 3.842 17 C -0.139 4.139 18 C -0.073 4.073 19 C -0.098 4.098 20 C -0.102 4.102 21 C -0.106 4.106 22 C -0.035 4.035 23 Cl -0.072 7.072 24 C -0.089 4.089 25 C 0.536 3.464 26 O -0.476 6.476 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.011 0.989 30 H 0.256 0.744 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.429 0.571 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.148 0.852 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 -12.979 -15.507 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.286 5.286 3 C -0.401 4.401 4 H 0.099 0.901 5 C -0.187 4.187 6 N -0.543 5.543 7 Si 0.738 3.262 8 H -0.209 1.209 9 H -0.215 1.215 10 H -0.205 1.205 11 C 0.135 3.865 12 N -0.326 5.326 13 C 0.403 3.597 14 O -0.407 6.407 15 N -0.398 5.398 16 C 0.066 3.934 17 C -0.197 4.197 18 C -0.075 4.075 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.062 4.062 23 Cl -0.043 7.043 24 C -0.108 4.108 25 C 0.321 3.679 26 O -0.348 6.348 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.273 0.727 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.166 0.834 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.074 -12.515 -14.840 19.412 hybrid contribution 0.683 1.299 -0.808 1.676 sum 0.757 -11.215 -15.648 19.267 Atomic orbital electron populations 1.21023 0.81838 0.96433 1.00217 1.44574 1.02715 1.01243 1.80065 1.19411 0.98788 0.85103 1.36816 0.90055 1.25064 0.97447 0.98853 0.97370 1.70083 1.19279 1.27825 1.37099 0.86262 0.78672 0.83058 0.78174 1.20910 1.21485 1.20468 1.21214 0.98103 0.88659 0.78501 1.49544 1.19357 1.45530 1.18142 1.16294 0.83044 0.79384 0.80979 1.90978 1.37779 1.39206 1.72742 1.45832 1.22863 1.55631 1.15441 1.20160 0.85135 0.94230 0.93873 1.21955 1.03620 0.90853 1.03258 1.19383 0.93859 0.99927 0.94334 1.21521 0.92589 0.97944 0.99591 1.21131 1.00489 0.97409 0.92991 1.21121 0.92690 0.99581 0.99091 1.20793 0.93329 1.01329 0.90734 1.98371 1.83591 1.80785 1.41567 1.20672 1.00041 0.97864 0.92268 1.20543 0.84052 0.77528 0.85823 1.90685 1.19592 1.49320 1.75156 0.94003 0.93939 0.97020 0.93396 0.90118 0.89084 0.72720 0.90924 0.89894 0.90615 0.83440 0.84580 0.84838 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.69 8.98 59.84 0.54 4.23 16 2 N -0.57 -14.32 3.16 -184.86 -0.58 -14.90 16 3 C -0.27 -7.61 9.65 -15.06 -0.15 -7.76 16 4 H 0.08 2.36 7.39 -52.49 -0.39 1.97 16 5 C 0.01 0.35 5.10 -17.43 -0.09 0.26 16 6 N -0.90 -25.99 10.72 55.49 0.59 -25.39 16 7 Si 0.91 22.49 29.57 -169.99 -5.03 17.46 16 8 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 C 0.34 7.21 6.20 -63.75 -0.40 6.81 16 12 N -0.57 -10.78 2.84 -124.23 -0.35 -11.13 16 13 C 0.70 13.01 8.62 -88.02 -0.76 12.25 16 14 O -0.53 -11.86 17.02 5.33 0.09 -11.77 16 15 N -0.73 -9.93 5.29 -54.03 -0.29 -10.21 16 16 C 0.16 2.02 1.16 -133.25 -0.15 1.87 16 17 C -0.14 -1.28 8.96 37.15 0.33 -0.95 16 18 C -0.07 -0.93 4.87 -104.63 -0.51 -1.44 16 19 C -0.10 -1.25 9.19 -39.58 -0.36 -1.61 16 20 C -0.10 -1.12 10.05 -39.59 -0.40 -1.51 16 21 C -0.11 -1.14 9.83 -39.55 -0.39 -1.52 16 22 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 23 Cl -0.07 -0.77 28.96 -51.86 -1.50 -2.28 16 24 C -0.09 -1.05 9.13 -39.55 -0.36 -1.41 16 25 C 0.54 8.86 6.53 -10.55 -0.07 8.79 16 26 O -0.48 -8.39 15.02 5.60 0.08 -8.31 16 27 H 0.04 1.10 7.34 -51.93 -0.38 0.71 16 28 H 0.04 1.14 7.35 -51.93 -0.38 0.75 16 29 H 0.01 0.26 7.33 -51.93 -0.38 -0.13 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.08 1.55 7.93 -51.93 -0.41 1.14 16 32 H 0.09 1.93 7.76 -51.93 -0.40 1.53 16 33 H 0.43 4.61 8.10 -40.82 -0.33 4.28 16 34 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.15 1.99 5.82 -52.48 -0.31 1.68 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.13 1.33 6.95 -52.48 -0.36 0.96 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -32.47 353.31 -9.27 -41.74 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.60 Total: 2.13 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: -3.01 Total: 17.34 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.63 Total: -61.64 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.17 Total: -20.08 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.47 -9.27 -41.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725772607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.783 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds