Wall clock time and date at job start Tue Mar 31 2020 19:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36936 * 119.99896 * 2 1 4 4 H 1.08000 * 120.00089 * 203.03640 * 3 2 1 5 5 C 1.38811 * 120.00188 * 23.03739 * 3 2 1 6 6 N 1.31618 * 119.99854 * 13.13565 * 5 3 2 7 7 Si 1.86798 * 120.00110 * 193.13952 * 5 3 2 8 8 H 1.48498 * 109.47146 * 59.99627 * 7 5 3 9 9 H 1.48494 * 109.47225 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47099 * 299.99880 * 7 5 3 11 11 C 1.46498 * 120.00175 * 180.02562 * 2 1 3 12 12 N 1.46502 * 109.47512 * 89.99465 * 11 2 1 13 13 C 1.33793 * 124.17872 * 90.02491 * 12 11 2 14 14 O 1.21536 * 123.76957 * 359.96242 * 13 12 11 15 15 N 1.34523 * 112.45609 * 179.97438 * 13 12 11 16 16 C 1.47308 * 106.62252 * 0.02562 * 15 13 12 17 17 C 1.52995 * 110.60048 * 241.31676 * 16 15 13 18 18 C 1.50701 * 110.59939 * 118.52635 * 16 15 13 19 19 C 1.38264 * 119.99627 * 211.17858 * 18 16 15 20 20 C 1.38218 * 120.02935 * 179.76805 * 19 18 16 21 21 C 1.38239 * 120.00817 * 0.50763 * 20 19 18 22 22 C 1.38322 * 119.99240 * 359.74477 * 21 20 19 23 23 Cl 1.73598 * 120.01668 * 180.02562 * 22 21 20 24 24 C 1.38192 * 119.99338 * 31.45150 * 18 16 15 25 25 C 1.34772 * 124.17688 * 269.73125 * 12 11 2 26 26 O 1.21230 * 127.15595 * 0.02562 * 25 12 11 27 27 H 1.09002 * 109.47103 * 275.13071 * 1 2 3 28 28 H 1.09000 * 109.47250 * 35.12542 * 1 2 3 29 29 H 1.09001 * 109.47371 * 155.12816 * 1 2 3 30 30 H 0.97002 * 120.00033 * 179.97438 * 6 5 3 31 31 H 1.09002 * 109.46971 * 329.99929 * 11 2 1 32 32 H 1.08997 * 109.47236 * 209.99718 * 11 2 1 33 33 H 0.96998 * 126.68448 * 179.97438 * 15 13 12 34 34 H 1.09007 * 109.47000 * 59.29870 * 17 16 15 35 35 H 1.08995 * 109.47291 * 179.29965 * 17 16 15 36 36 H 1.09003 * 109.47361 * 299.30013 * 17 16 15 37 37 H 1.08007 * 119.98352 * 359.97438 * 19 18 16 38 38 H 1.07997 * 119.99412 * 180.25432 * 20 19 18 39 39 H 1.08005 * 119.99908 * 179.72214 * 21 20 19 40 40 H 1.08004 * 120.00594 * 359.95886 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2232 -0.3660 5 6 1.5386 2.3401 0.4704 6 7 0.4137 2.2595 1.1490 7 14 2.3127 4.0078 0.1403 8 1 2.4119 4.2261 -1.3252 9 1 1.4716 5.0722 0.7441 10 1 3.6706 4.0507 0.7401 11 6 2.1975 -1.2687 -0.0006 12 7 2.4416 -1.6911 -1.3820 13 6 3.5256 -1.3548 -2.0904 14 8 4.4250 -0.6598 -1.6600 15 7 3.5086 -1.8716 -3.3322 16 6 2.2581 -2.6411 -3.4513 17 6 2.5578 -4.1169 -3.7216 18 6 1.3863 -2.0708 -4.5403 19 6 0.0099 -2.1514 -4.4372 20 6 -0.7904 -1.6243 -5.4332 21 6 -0.2148 -1.0255 -6.5383 22 6 1.1622 -0.9492 -6.6446 23 17 1.8858 -0.1968 -8.0317 24 6 1.9628 -1.4724 -5.6445 25 6 1.6046 -2.4712 -2.0942 26 8 0.5477 -2.9377 -1.7269 27 1 -0.3633 0.0919 1.0236 28 1 -0.3634 0.8405 -0.5913 29 1 -0.3634 -0.9323 -0.4322 30 1 -0.0131 3.0660 1.4781 31 1 1.6084 -2.0286 0.5129 32 1 3.1499 -1.1386 0.5133 33 1 4.1871 -1.7589 -4.0162 34 1 3.1570 -4.5213 -2.9056 35 1 1.6217 -4.6704 -3.7939 36 1 3.1085 -4.2104 -4.6576 37 1 -0.4402 -2.6234 -3.5763 38 1 -1.8655 -1.6839 -5.3501 39 1 -0.8402 -0.6177 -7.3186 40 1 3.0381 -1.4128 -5.7268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725772607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:28 Heat of formation + Delta-G solvation = -8.851551 kcal Electronic energy + Delta-G solvation = -27794.479783 eV Core-core repulsion = 23829.373714 eV Total energy + Delta-G solvation = -3965.106069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.55750 -40.41920 -39.54045 -37.95942 -37.47087 -37.19758 -35.50583 -33.18616 -32.43879 -31.82609 -30.41542 -28.40110 -27.86538 -25.82657 -24.25880 -23.99447 -23.52837 -22.06213 -21.22474 -19.28839 -18.90519 -18.29290 -17.70171 -17.38052 -16.89135 -16.77762 -16.52729 -16.34278 -15.86423 -15.50847 -15.37411 -15.25515 -15.16469 -14.64397 -14.49283 -14.15438 -13.98546 -13.45886 -13.31761 -13.27828 -12.94895 -12.80074 -12.70848 -12.60882 -12.51298 -12.41127 -12.16322 -12.04947 -11.90468 -11.80110 -11.15178 -10.90479 -10.74150 -10.53655 -10.01275 -9.75492 -9.12090 -7.96821 -5.48711 0.02215 0.15622 0.63361 1.07145 1.30401 1.40780 1.45176 1.49757 2.06680 2.15795 2.43971 2.58535 2.87710 3.19958 3.23471 3.55116 3.77256 3.81262 4.03821 4.07275 4.19548 4.35691 4.40673 4.49651 4.58749 4.67289 4.73466 4.78977 4.81130 4.84114 5.09337 5.12617 5.20487 5.27607 5.35631 5.55497 5.62290 5.69978 5.85559 6.14657 6.23600 6.43317 7.00191 7.20857 7.63861 8.06113 9.06196 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.004492 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.352669 B = 6231.476079 C = 7078.709586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.590 5.590 3 C -0.275 4.275 4 H 0.066 0.934 5 C -0.035 4.035 6 N -0.925 5.925 7 Si 0.964 3.036 8 H -0.285 1.285 9 H -0.284 1.284 10 H -0.276 1.276 11 C 0.353 3.647 12 N -0.584 5.584 13 C 0.700 3.300 14 O -0.577 6.577 15 N -0.707 5.707 16 C 0.171 3.829 17 C -0.134 4.134 18 C -0.086 4.086 19 C -0.114 4.114 20 C -0.102 4.102 21 C -0.105 4.105 22 C -0.044 4.044 23 Cl -0.066 7.066 24 C -0.094 4.094 25 C 0.530 3.470 26 O -0.486 6.486 27 H 0.021 0.979 28 H 0.014 0.986 29 H 0.030 0.970 30 H 0.254 0.746 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.446 0.554 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.136 0.864 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -14.006 -17.795 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.312 5.312 3 C -0.405 4.405 4 H 0.084 0.916 5 C -0.232 4.232 6 N -0.570 5.570 7 Si 0.792 3.208 8 H -0.211 1.211 9 H -0.209 1.209 10 H -0.201 1.201 11 C 0.145 3.855 12 N -0.335 5.335 13 C 0.400 3.600 14 O -0.453 6.453 15 N -0.373 5.373 16 C 0.080 3.920 17 C -0.192 4.192 18 C -0.088 4.088 19 C -0.132 4.132 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.071 4.071 23 Cl -0.037 7.037 24 C -0.113 4.113 25 C 0.317 3.683 26 O -0.358 6.358 27 H 0.040 0.960 28 H 0.033 0.967 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.293 0.707 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.154 0.846 38 H 0.176 0.824 39 H 0.173 0.827 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.296 -13.619 -17.208 21.947 hybrid contribution 0.608 1.470 -0.211 1.605 sum 0.904 -12.149 -17.419 21.256 Atomic orbital electron populations 1.20654 0.81906 0.96015 0.98472 1.44620 1.02747 1.01801 1.82023 1.19409 0.98360 0.86518 1.36206 0.91636 1.25713 0.98202 1.01605 0.97674 1.70197 1.20339 1.28176 1.38283 0.85404 0.78028 0.79716 0.77666 1.21113 1.20928 1.20123 1.21117 0.97627 0.87628 0.79095 1.48738 1.20421 1.46411 1.17939 1.16277 0.82275 0.79212 0.82201 1.90954 1.39143 1.41238 1.73927 1.45630 1.23443 1.54401 1.13872 1.20227 0.83980 0.96432 0.91364 1.22030 1.04635 0.87681 1.04874 1.19355 0.93843 1.00995 0.94592 1.21549 0.92909 0.98808 0.99950 1.21397 1.01584 0.96575 0.92432 1.21419 0.92737 0.98786 0.99386 1.20962 0.93826 1.01338 0.90965 1.98375 1.83537 1.80636 1.41124 1.20806 1.00891 0.97548 0.92008 1.21054 0.83614 0.76571 0.87064 1.90683 1.19898 1.49411 1.75760 0.96050 0.96719 0.95140 0.93715 0.88400 0.89900 0.70728 0.90525 0.88993 0.87739 0.84586 0.82410 0.82705 0.83698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.78 8.98 127.77 1.15 9.93 16 2 N -0.59 -30.32 3.16 -738.78 -2.34 -32.65 16 3 C -0.28 -15.72 9.65 84.03 0.81 -14.91 16 4 H 0.07 3.90 7.39 -2.91 -0.02 3.88 16 5 C -0.04 -2.01 5.10 84.86 0.43 -1.58 16 6 N -0.93 -54.55 10.72 21.65 0.23 -54.32 16 7 Si 0.96 46.81 29.57 68.60 2.03 48.84 16 8 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 9 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 C 0.35 14.94 6.20 170.96 1.06 16.00 16 12 N -0.58 -21.71 2.84 -784.20 -2.23 -23.94 16 13 C 0.70 25.50 8.62 179.44 1.55 27.05 16 14 O -0.58 -25.75 17.02 -3.83 -0.07 -25.82 16 15 N -0.71 -17.82 5.29 -443.27 -2.34 -20.16 16 16 C 0.17 4.00 1.16 2.24 0.00 4.00 16 17 C -0.13 -2.05 8.96 71.98 0.64 -1.41 16 18 C -0.09 -2.00 4.87 -19.87 -0.10 -2.10 16 19 C -0.11 -2.69 9.19 22.27 0.20 -2.49 16 20 C -0.10 -2.00 10.05 22.27 0.22 -1.77 16 21 C -0.10 -1.96 9.83 22.29 0.22 -1.74 16 22 C -0.04 -0.91 6.32 22.32 0.14 -0.77 16 23 Cl -0.07 -1.26 28.96 -2.72 -0.08 -1.33 16 24 C -0.09 -1.96 9.13 22.29 0.20 -1.76 16 25 C 0.53 16.90 6.53 87.94 0.57 17.47 16 26 O -0.49 -16.60 15.02 -2.87 -0.04 -16.65 16 27 H 0.02 1.14 7.34 -2.39 -0.02 1.13 16 28 H 0.01 0.78 7.35 -2.39 -0.02 0.76 16 29 H 0.03 1.37 7.33 -2.39 -0.02 1.36 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.10 3.74 7.93 -2.39 -0.02 3.72 16 32 H 0.08 3.60 7.76 -2.39 -0.02 3.59 16 33 H 0.45 8.42 8.10 -92.71 -0.75 7.67 16 34 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.14 3.52 5.82 -2.91 -0.02 3.50 16 38 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 39 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.15 2.51 6.95 -2.91 -0.02 2.49 16 Total: -1.00 -71.21 353.31 2.62 -68.58 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.35 Total: 11.52 kcal Atomic # 6 Polarization: 38.82 SS G_CDS: 7.12 Total: 45.94 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -6.68 Total: -131.07 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -0.11 Total: -42.47 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.33 kcal Total: -71.21 2.62 -68.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725772607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.730 kcal (2) G-P(sol) polarization free energy of solvation -71.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds