Wall clock time and date at job start Tue Mar 31 2020 20:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38030 * 119.98686 * 359.72549 * 3 2 1 5 5 C 1.40035 * 119.82417 * 179.74933 * 4 3 2 6 6 C 1.46855 * 120.09902 * 180.25315 * 5 4 3 7 7 O 1.21296 * 120.00366 * 0.27031 * 6 5 4 8 8 C 1.40017 * 119.80174 * 0.52734 * 5 4 3 9 9 C 1.37677 * 119.97825 * 359.72439 * 8 5 4 10 10 C 1.38923 * 120.17518 * 0.02562 * 9 8 5 11 11 O 1.35746 * 119.89755 * 179.97438 * 10 9 8 12 12 C 1.42888 * 117.00379 * 0.02562 * 11 10 9 13 13 C 1.50703 * 109.47492 * 179.97438 * 12 11 10 14 14 O 1.20834 * 119.99475 * 0.02562 * 13 12 11 15 15 O 1.34224 * 120.00527 * 179.97438 * 13 12 11 16 16 C 1.45198 * 117.00244 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47311 * 180.02562 * 16 15 13 18 18 O 1.21294 * 119.99985 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00343 * 180.02562 * 17 16 15 20 20 C 1.37093 * 120.00313 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99961 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00318 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99827 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00410 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46877 * 59.99592 * 24 22 20 26 26 H 1.48490 * 109.47265 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46879 * 300.00066 * 24 22 20 28 28 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 30 30 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 31 31 H 1.08001 * 120.08537 * 0.02562 * 4 3 2 32 32 H 1.08005 * 120.00133 * 180.27162 * 6 5 4 33 33 H 1.07996 * 120.01259 * 179.70648 * 8 5 4 34 34 H 1.07996 * 119.90902 * 180.02562 * 9 8 5 35 35 H 1.09000 * 109.47621 * 300.00311 * 12 11 10 36 36 H 1.09004 * 109.47105 * 60.00315 * 12 11 10 37 37 H 1.08999 * 109.47335 * 300.00951 * 16 15 13 38 38 H 1.09004 * 109.46355 * 60.00435 * 16 15 13 39 39 H 0.96998 * 120.00136 * 0.02562 * 19 17 16 40 40 H 0.96998 * 120.00359 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2946 2.3692 -0.0057 5 6 1.9339 3.6151 -0.0004 6 6 1.1397 4.8504 -0.0008 7 8 -0.0718 4.7926 -0.0009 8 6 3.3326 3.6795 -0.0005 9 6 4.0747 2.5199 0.0000 10 6 3.4395 1.2844 -0.0001 11 8 4.1767 0.1445 -0.0001 12 6 5.5980 0.2912 0.0004 13 6 6.2436 -1.0706 0.0008 14 8 5.5567 -2.0647 0.0002 15 8 7.5814 -1.1792 0.0008 16 6 8.1338 -2.5220 0.0018 17 6 9.6389 -2.4460 0.0023 18 8 10.1916 -1.3664 0.0023 19 7 10.3708 -3.5777 0.0027 20 6 11.7400 -3.5086 0.0026 21 1 12.2321 -2.5472 0.0026 22 6 12.4946 -4.6754 0.0025 23 7 11.8957 -5.8451 0.0020 24 14 14.3602 -4.5813 0.0031 25 1 14.8189 -3.8575 1.2159 26 1 14.9251 -5.9545 0.0035 27 1 14.8196 -3.8569 -1.2090 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 0.2160 2.3141 -0.0098 32 1 1.6345 5.8105 -0.0011 33 1 3.8292 4.6386 -0.0011 34 1 5.1534 2.5709 0.0003 35 1 5.9071 0.8399 -0.8893 36 1 5.9064 0.8393 0.8907 37 1 7.7968 -3.0528 0.8921 38 1 7.7968 -3.0540 -0.8878 39 1 9.9288 -4.4412 0.0023 40 1 12.4224 -6.6597 0.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731232988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:02 Heat of formation + Delta-G solvation = -213.104551 kcal Electronic energy + Delta-G solvation = -27165.082498 eV Core-core repulsion = 22718.117438 eV Total energy + Delta-G solvation = -4446.965060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.04681 -41.52117 -40.20233 -39.91077 -39.53473 -37.77236 -37.39082 -36.03409 -33.42487 -32.06915 -31.51731 -30.74813 -29.20284 -28.41251 -26.55915 -25.31643 -23.67349 -22.56096 -21.74860 -21.44826 -20.10041 -19.89659 -18.93167 -18.55275 -18.21242 -18.06917 -17.60261 -17.14560 -17.07926 -16.61955 -16.46016 -16.41013 -16.05876 -15.87553 -15.70935 -15.57482 -15.22417 -15.00951 -14.47967 -14.09272 -13.96119 -13.70142 -13.55297 -13.49445 -13.46329 -12.92674 -12.55126 -12.48227 -12.34909 -12.28618 -12.12553 -12.03705 -11.94270 -11.68356 -11.56649 -10.79792 -10.52601 -10.12132 -9.89928 -9.01271 -8.51961 -6.02883 -0.40694 0.27220 0.81791 0.94240 1.38313 1.44207 1.46426 1.55330 1.86677 2.17862 2.25817 2.36189 2.71026 2.98227 3.13603 3.33505 3.46922 3.75336 3.80146 3.97129 3.99880 4.03511 4.07673 4.13660 4.16053 4.20510 4.27483 4.29541 4.47833 4.60776 4.65823 5.01771 5.13094 5.16577 5.21490 5.37204 5.51982 5.84694 5.88805 6.39156 6.44087 6.52415 6.54345 7.02507 7.39399 7.92063 8.64621 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.030213 B = 0.001715 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.537951 B =16321.290197 C =17222.078930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.062 3.938 4 C -0.125 4.125 5 C -0.206 4.206 6 C 0.396 3.604 7 O -0.512 6.512 8 C -0.039 4.039 9 C -0.187 4.187 10 C 0.116 3.884 11 O -0.310 6.310 12 C 0.071 3.929 13 C 0.461 3.539 14 O -0.522 6.522 15 O -0.332 6.332 16 C 0.072 3.928 17 C 0.438 3.562 18 O -0.615 6.615 19 N -0.557 5.557 20 C -0.339 4.339 21 H 0.087 0.913 22 C -0.009 4.009 23 N -0.915 5.915 24 Si 0.999 3.001 25 H -0.269 1.269 26 H -0.271 1.271 27 H -0.269 1.269 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.187 0.813 34 H 0.176 0.824 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.400 0.600 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.039 18.855 -0.011 27.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.017 3.983 4 C -0.144 4.144 5 C -0.207 4.207 6 C 0.258 3.742 7 O -0.388 6.388 8 C -0.057 4.057 9 C -0.205 4.205 10 C 0.070 3.930 11 O -0.224 6.224 12 C -0.004 4.004 13 C 0.304 3.696 14 O -0.411 6.411 15 O -0.248 6.248 16 C -0.005 4.005 17 C 0.224 3.776 18 O -0.502 6.502 19 N -0.195 5.195 20 C -0.468 4.468 21 H 0.105 0.895 22 C -0.210 4.210 23 N -0.555 5.555 24 Si 0.822 3.178 25 H -0.194 1.194 26 H -0.196 1.196 27 H -0.194 1.194 28 H 0.133 0.867 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.178 0.822 33 H 0.204 0.796 34 H 0.193 0.807 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.234 0.766 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.409 18.598 -0.011 27.612 hybrid contribution 0.376 -1.207 0.000 1.264 sum -20.033 17.391 -0.011 26.529 Atomic orbital electron populations 1.23307 0.76671 1.05413 1.02038 1.86200 1.23113 1.26340 1.89356 1.18442 0.89551 0.85806 1.04471 1.21422 1.00665 0.90969 1.01385 1.21028 0.95874 0.95143 1.08651 1.24684 0.87903 0.93943 0.67670 1.90537 1.19673 1.91131 1.37447 1.21597 0.91282 0.99968 0.92887 1.21552 1.02683 0.89746 1.06546 1.18943 0.88138 0.86336 0.99604 1.86083 1.17660 1.29963 1.88684 1.22194 0.78652 0.90583 1.08965 1.23691 0.80675 0.92743 0.72471 1.90715 1.64339 1.40512 1.45484 1.86474 1.22091 1.32637 1.83568 1.22563 0.90896 0.81478 1.05547 1.20008 0.88569 0.84736 0.84272 1.90524 1.73650 1.29234 1.56792 1.41738 1.06631 1.07168 1.63915 1.19710 0.81621 0.94708 1.50754 0.89506 1.26145 1.05398 0.93833 0.95618 1.69668 1.38689 0.98119 1.49036 0.84896 0.76002 0.77737 0.79172 1.19429 1.19579 1.19417 0.86715 0.91822 0.91819 0.83968 0.82160 0.79556 0.80723 0.83792 0.83805 0.87504 0.87499 0.76594 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -8.29 10.28 -79.54 -0.82 -9.11 16 3 C 0.06 1.36 6.69 22.52 0.15 1.51 16 4 C -0.13 -2.20 8.58 22.66 0.19 -2.01 16 5 C -0.21 -2.48 5.87 -20.16 -0.12 -2.60 16 6 C 0.40 3.83 11.44 70.08 0.80 4.63 16 7 O -0.51 -9.86 17.16 -3.08 -0.05 -9.91 16 8 C -0.04 -0.29 9.78 22.57 0.22 -0.07 16 9 C -0.19 -2.10 9.01 22.30 0.20 -1.90 16 10 C 0.12 2.32 6.71 22.73 0.15 2.47 16 11 O -0.31 -7.71 9.43 -64.22 -0.61 -8.31 16 12 C 0.07 1.35 5.32 71.24 0.38 1.72 16 13 C 0.46 13.54 8.03 71.24 0.57 14.12 16 14 O -0.52 -18.89 16.25 28.37 0.46 -18.43 16 15 O -0.33 -11.27 9.75 -45.00 -0.44 -11.71 16 16 C 0.07 2.62 5.94 71.23 0.42 3.05 16 17 C 0.44 20.67 7.86 87.66 0.69 21.36 16 18 O -0.62 -33.57 16.08 15.72 0.25 -33.32 16 19 N -0.56 -27.98 5.29 -306.99 -1.62 -29.60 16 20 C -0.34 -18.64 9.68 84.04 0.81 -17.82 16 21 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 22 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 23 N -0.92 -48.08 13.05 21.66 0.28 -47.80 16 24 Si 1.00 41.26 29.55 68.60 2.03 43.29 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 28 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 0.84 7.65 -2.39 -0.02 0.82 16 30 H 0.06 0.84 7.67 -2.38 -0.02 0.82 16 31 H 0.14 2.44 5.87 -2.91 -0.02 2.42 16 32 H 0.16 -0.16 8.06 -2.91 -0.02 -0.18 16 33 H 0.19 -0.35 8.06 -2.91 -0.02 -0.38 16 34 H 0.18 0.90 6.27 -2.91 -0.02 0.89 16 35 H 0.14 1.76 7.65 -2.39 -0.02 1.74 16 36 H 0.14 1.76 7.65 -2.39 -0.02 1.74 16 37 H 0.11 3.51 8.13 -2.39 -0.02 3.49 16 38 H 0.11 3.52 8.13 -2.39 -0.02 3.50 16 39 H 0.40 19.01 7.90 -92.71 -0.73 18.27 16 40 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -82.75 365.03 5.93 -76.82 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.38 Total: 22.20 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 6.06 Total: 25.89 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -1.34 Total: -77.40 kcal Atomic # 8 Polarization: -89.59 SS G_CDS: -1.20 Total: -90.79 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -82.75 5.93 -76.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731232988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.285 kcal (2) G-P(sol) polarization free energy of solvation -82.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds